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18.12.2015 · 1 min read

This is a crosspost from Jonathan Dursi R&D computing at scale. See the original post here.

Approximate Mapping of Nanopore Squiggle Data with Spatial Indexing

Over at the Simpson Lab blog, I have an post describing a novel method for Directly Mapping Squiggle Data, using k-d trees to map segmented kmers; a simple proof of concept is available on github.