Title	Repository	Tags	Posted By
Python classes defining __slots__ should automatically compile to extension classes	cython/cython	Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	robertwb
Robust default color scheme	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	dimaqq
Add install instructions when dependencies are missing	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0	shazow
[docs] update make.cmd	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0 windows	Carreau
Fallback to pydoc if site._Helper is not defined	ipython/ipython	bug closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	eudoxos
weighted stats class for pandas objects	statsmodels/statsmodels	comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist	jseabold
Add option to project `separation` onto an ellipse	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy coordinates python science	eteq
diagnostic plots for regression - another version	statsmodels/statsmodels	comp-graphics count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis wishlist	josef-pkt
Improve the example scripts	NeuralEnsemble/PyNN	enhancement	apdavison
improve interpolation in IERS data	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy python science time	mhvk
Test coverage for scipy.signals.windows needs improvement	scipy/scipy	algorithms closember python scientific-computing scipy scipy.signal task	ankit-maverick
Is there a function to generate a train set and test set from DataFrame？	statsmodels/statsmodels	count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing pandas-integration prediction python regression-models robust-estimation statistics timeseries-analysis wishlist	cloga
classification performance measures	statsmodels/statsmodels	comp-discrete count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	jseabold
model comparison notebook	statsmodels/statsmodels	FAQ comp-docs count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	jseabold
Add (pred_table) to appropriate GLM results	statsmodels/statsmodels	comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist	jseabold
fused function dispatch is slow for Python calls	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	robertwb
Implement "Beer–Lambert Law" support.	colour-science/colour	API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Implement support for "Mie Scattering".	colour-science/colour	API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Allow tuples/iterables as convenience for setting contraints on model parameters	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy modeling python science	embray
modify the appearance of the ACF PLOT function when using subplots	statsmodels/statsmodels	comp-graphics comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	aviPython
Add FIR filter examples to scipy.signal documentation	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.signal task	rgommers
ENH: More informative error message in fit_regularized Hessian inversion fail	statsmodels/statsmodels	count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	jseabold
pairwise_tukeyhsd - retrieve "reject" values	statsmodels/statsmodels	comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction prio-high python regression-models robust-estimation statistics timeseries-analysis type-enh	arnaldorusso
Reading and writing Excel spreadsheets in the unified table interface	astropy/astropy	Enhancement Package-novice astronomy astrophysics astropy python science table unified-io	hamogu
Add examples to docstrings	pvlib/pvlib-python	documentation easy help-wanted photovoltaic python renewable-energy renewables solar-energy testing	bmu
Add Kobayashi neuron model	NeuralEnsemble/PyNN	enhancement	apdavison
Implement support for "BFD (l:c) colour-difference" computations.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Remove unused variational::base_family class	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan	bob-carpenter
Add API documentation for public class attributes	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	cscorley
Support retrieving the current value of state variables without recording	NeuralEnsemble/PyNN	enhancement	apdavison
Do we remember why utils.io.IOStream exists?	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	takluyver
Implement support for "JCAMP-DX" and "CxF" xml file formats.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	Ron024
ipython Sphinx directive executes code when excluded by only, ifconfig	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	cgranade
Improve test coverage by moving self-tests	biopython/biopython	bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	peterjc
Add missing methods to Series	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy	mrocklin
array.to_hdf5(compute=False) doesn't return delayed value	dask/dask	array dask io numpy pandas pydata python scikit-learn scipy	nirizr
Treat subprocess errors as exceptions	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	minrk
test on pypy once pypy implements supported Python 3	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	minrk
add poisson_log_lcdf and poisson_log_lccdf functions	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan	davharris
feature request: redirect magic's result to pager	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	taoluo
Convergence information being displayed during ARIMA.fit() regardless of disp value	statsmodels/statsmodels	comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	philipobrien
Deprecate record.database_letters, record.query_letters	biopython/biopython	From-Redmine bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	vincentdavis
make 'snake' documentation clearer	bluesky/bluesky	bluesky dataacquisition documentation python	tacaswell
better linking from api docs to examples	bluesky/bluesky	bluesky dataacquisition documentation python	tacaswell
cythonize doesn't work with cython_compile_time_env	cython/cython	Build-System big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	sirfz
BleiCorpus after serialize cannot be loaded	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	vincentmajor
Documentation regarding input/output options	mosdef-hub/foyer	atom-typing disseminating-forcefields documentation force-field foyer molecular-dynamics molecular-simulation python	ctk3b
Error message while accessing a non-existent method of a class without gil can be improved.	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	MechCoder
DOC: Add "Examples" to docstrings	scipy/scipy	Documentation algorithms closember python scientific-computing scipy task	WarrenWeckesser
Dual Shapes for Convex Polyhedra	glotzerlab/coxeter	computational-geometry enhancement geometry physics polygons polyhedra shapes	bdice
MSA functions	simd-everywhere/simde	GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
LinearLSQFitter cannot fit compound models	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy modeling python science	jehturner
'ConcatenatedDoc2Vec' object has no attribute 'corpus_count'	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	jasminezz
Implement Asymmetric Laplace Distribution	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan	heroxbd
cygdb tests are failing	cython/cython	Debugger Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	lindsayad
DOC: pivot function	pandas-dev/pandas	Docs Reshaping alignment data-analysis data-science flexible pandas python	jesrael
inplace kwarg must be of bool type, but other boolean kwargs don't have this restriction	pandas-dev/pandas	API---Consistency Enhancement Error-Reporting alignment data-analysis data-science flexible inplace pandas python	colinmorris
FiniteAutomaton : declare a factory for intersection, etc.	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver	cprudhom
proper check for filename before calling subprocess	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	prakhar2b
bivariate normal cdf	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature new-function stan	bob-carpenter
minimal training time benchmark	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning performance planned python r tutorial	szilard
DOC: section on caveats of storing lists inside DataFrame/Series	pandas-dev/pandas	Docs Nested-Data alignment data-analysis data-science flexible pandas python	chris-b1
multiple functions from scipy.special do not work with quantities	astropy/astropy	Docs Effort-low Feature-Request Hacktoberfest Package-novice astronomy astrophysics astropy python science units	namurphy
Factor out the code that sorts snaked data by position.	bluesky/bluesky	bluesky dataacquisition maintenance python scan-spec	danielballan
DOC: use shared_docs for isna/notna & isnull/notnull	pandas-dev/pandas	Docs Missing-data alignment data-analysis data-science flexible pandas python	jreback
Add random tests for custom equality	Martinsos/edlib	alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment	Martinsos
Add an est_time plan tool	bluesky/bluesky	bluesky dataacquisition enhancement hackathon python user-IO	danielballan
Create periodogram for Epoch folding	StingraySoftware/stingray	GSoC astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest low-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	matteobachetti
Improving computational time in LDASeqModel	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec	Diego999
Implementation of scipy.integrate.simps	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	Joshuaalbert
DOC: add additional gallery examples	geopandas/geopandas	documentation geoparquet geospatial pandas plotting python spatial	jorisvandenbossche
Check what's the reason to use double-precision in topic models	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec	menshikh-iv
[ENH] Color code progress bars for detectors and motors.	bluesky/bluesky	bluesky dataacquisition hackathon python user-IO	ambarb
Add a tests for our tests helpers	dask/dask	dask numpy pandas pydata python scikit-learn scipy	TomAugspurger
Implement support for CIELab2000HL.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Recommend a new default value of gravity.abs_tol	AMReX-Astro/Castro	adaptive-mesh-refinement amr astrophysical-simulation astrophysics castro cfd gravity help-wanted hydrodynamics pde radiation reactions study	maximumcats
Add windows command line support to aligner	Martinsos/edlib	alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment	randrick
Function to check GFF	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Implement support for "CGATS" file format.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
List optional cytoolz dependency	dask/dask	dask numpy pandas pydata python scikit-learn scipy	jakirkham
How to contribute documentation to COBRApy?	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology docs enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python question sbml sbml-model sbml-simulation strain-engineering systems-biology	natJimenez
Cygdb not working with recent virtualenvs	cython/cython	Debugger big-data c cpp cpython cpython-extensions cython help-wanted performance python	BertrandBordage
Improvements of IntVar Views	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver	arnaud-m
deprecate int_step	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics bug documentation stan	bob-carpenter
Composition of Search Strategy with different limit	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp help-wanted java solver	bourreauEric
Confusing "TypeError: '<' not supported between … 'str' and 'int'" when doc-tag not present for `most_similar()`	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	souveekbose
Properly document all kwargs for POCS class	panoptes/POCS	Documentation astronomy citizen-science exoplantes panoptes python telescopes	wtgee
DOC: improve docs for broadcasting behavior	pandas-dev/pandas	Docs Numeric-Operations alignment data-analysis data-science flexible pandas python	jakevdp
Model calculation is not able to read features from stdin	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	vpd
Add an 'event' command	bluesky/bluesky	bluesky dataacquisition python user-IO	danielballan
BUG: Creating Index name using `names` names argument, doesn't set index name	pandas-dev/pandas	Docs MultiIndex alignment data-analysis data-science flexible pandas python	jsnowacki
Raise ValueError for read_json and orient='table' With Numeric Column Names	pandas-dev/pandas	Enhancement Error-Reporting IO-JSON alignment data-analysis data-science flexible pandas python	WillAyd
Hardware modifications log	panoptes/POCS	Enhancement astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Handle instrument calibration uncertainties for astrometry	sblunt/orbitize	enhancement	semaphoreP
Get horizon/obstructions from image	panoptes/POCS	Enhancement astronomy citizen-science exoplantes panoptes python scheduler telescopes	wtgee
Add column to name the file during `stats` sub-command	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
support ggplot style figures for stats command	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
Implement DESeq2 like normalization	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Account for field of view in horizon constraint	panoptes/POCS	astronomy citizen-science exoplantes panoptes python scheduler telescopes	wtgee
Function to parse queries and apply to the GFF file	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Dataset Collection	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition	ynop
generate validation data from ROOT (based on validation/data/*.json)	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
CLI for ANN	mlpack/mlpack	c-binding c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request	arjunmenon
ENH/REF GLM simplify computation if is_canonical	statsmodels/statsmodels	comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh type-refactor	josef-pkt
Pythran fallback not used for numpy call	cython/cython	Pythran big-data c cpp cpython cpython-extensions cython enhancement performance python	serge-sans-paille
Python wrappers are not profiled separately when binding=True	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	mhsmith
Add tutorial on Dirichlet Process Mixture Models	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	fritzo
Coercing a sliced C array to Python should create a list	cython/cython	Cython-Language-Feature Type-Analysis big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
Use scipy.stats functions for defining distributions	lanl/PyBNF	enhancement low-priority	ryants
Implement support for "A Perception-based Color Space for Illumination-invariant Image Processing".	colour-science/colour	API Feature Good-First-Issue Help-Wanted P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	TFiFiE
Add stats output to multiqc	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
issue when shifting with Timedelta in a groupby	pandas-dev/pandas	Docs Groupby Timedelta alignment data-analysis data-science flexible pandas python	randomgambit
Cannot load codemirror mode dynamically	vatlab/sos-notebook	enhancement help-wanted jupyter-kernels	BoPeng
Improve documentation	dicompyler/dicompyler-core	dicom dicom-rt dvh hacktoberfest help-wanted python radiation-oncology radiation-physics	bastula
Speed up f-string float formatting	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
measures param for grid search and cross_validate should support callables	NicolasHug/Surprise	enhancement factorization machine-learning matrix recommendation recommender svd systems	NicolasHug
using gnulib instead of some compatibility hacks	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
EXECUTE: support for the third argument (quiet execution)	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
implement CDF_* routines using NASA CDF lib	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
ADD JSON_PARSE	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot priority! programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Add support for saving and restoring procedures	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python save-files scientific-computing scientific-visualization	slayoo
Testsuite change from procedures to functions	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
test_resolve_routine fails (first of all, it fails with IDL)	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	opoplawski
Slice by 0-dimensional np.array	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	crusaderky
reimplement MEMORY (at least for 64-bit Linux) using wait() calls	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
input conversion reading string (or files?) with windows-style line ends ("\r\n")	gnudatalanguage/gdl	antlr astronomy bug c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
TRIRED	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
Speed up method calls by avoiding bound method instantiation	cython/cython	Optimization big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
plot functionality	lanl/PyBNF	enhancement low-priority	ryants
Automaticly deduce cat_features from DataFrame	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	wingrime
Doc for objects that inherit from BaseCoordinateFrame is messy	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy coordinates python science	dstansby
Test all the Jupyter notebooks in the CI	scikit-hep/pyhf	asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
GAN Inference	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch question variational-inference	sameerkhurana10
Wrong parameter distributions from DREAM	lanl/PyBNF	bug	emitra17
Install hdf5 as external library with fortran and mpi	spack/spack	build-tools documentation hpc hpsf linux macos package-manager python radiuss scientific-computing spack windows	JohnWGrove
ENH: Add rsquared and variants to state space models	statsmodels/statsmodels	comp-tsa comp-tsa-statespace count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	ChadFulton
copy_from_remote_to_remote question	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/documentation topic/transports type/task workflow workflow-engine workflows	KimBenjaminTang
Small improvements to the LightSource class	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Radiative coupling and tunnel junctions	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Rigorous models for tunnel junctions	qpv-research-group/solcore5	Hacktoberfest enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Derived properties	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
linter "did you mean..."	conda-forge/conda-smithy	continuous-integration hacktoberfest linter	CJ-Wright
Add NumPy's kron for Dask Arrays	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	jakirkham
Make nicer display of non edit view of document	ropenscilabs/qcoder	enhancement help-wanted r r-package rstats shiny unconf unconf18	elinw
Dask Collections API compatibility	dask/dask	dask numpy pandas pydata python scikit-learn scipy	TomAugspurger
Find bugs or unclear man pages in docs	miRTop/mirtop	formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
help with the header of sRNAbench	miRTop/mirtop	formatter gff isomirs mirna smallrna-seq	lpantano
ENH/API: allow different values for labels/index in DF.reindex __OR__ raise error	pandas-dev/pandas	Error-Reporting alignment data-analysis data-science flexible pandas python	h-vetinari
Add to summary tab	ropenscilabs/qcoder	enhancement hacktoberfest r r-package rstats shiny unconf unconf18	elinw
integrate mirtop into #galaxy	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
PAML run method docstrings - return value	biopython/biopython	Documentation bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	peterjc
Benchmark ORC reader	dask/dask	dask dataframe io needs-info numpy pandas pydata python scikit-learn scipy	jcrist
Package/Installer for Windows	LiberTEM/LiberTEM	data-processing electron-microscopy help-wanted image-processing python windows	sk1p
Package/Installer for Mac OS X	LiberTEM/LiberTEM	data-processing electron-microscopy help-wanted image-processing python	sk1p
Clean up code: `.str().length()`	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan	syclik
Crash when bounds of prange() are Python objects	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
Updating value of a single row of a column using loc or at fails	pandas-dev/pandas	Needs-Tests alignment data-analysis data-science flexible pandas python	abhinav-upadhyay
Apply the same transformation to image and mask in elastic_transform ?	DLTK/DLTK	cnn data-science deep-learning deep-neural-networks dltk dltk-model-zoo enhancement help-wanted machine-learning medical medical-image-processing medical-imaging ml neural-network neural-networks neuroimaging python tensorflow	Jing-He
Unit test for `get_phase_lag` and `get_mean_phase_difference` functions	StingraySoftware/stingray	astronomy astrophysics blackhole blackholes data-analysis enhancement fourier-analysis fourier-transform hacktoberfest medium-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	swapsha96
Better user-facing messages on invalid IDs	kblin/ncbi-acc-download	enhancement help-wanted	areejalsheikh
DOC: avoid iteration for light travel time of lots of objects	astropy/astropy	Docs Effort-low Package-novice Performance astronomy astrophysics astropy python science time	StuartLittlefair
stdint compat for windows	cython/cython	Code-Generation Library big-data c cpp cpython cpython-extensions cython help-wanted performance python	jbrockmendel
Add unbounded pointer depth in pure Python 3.7+	cython/cython	big-data c cpp cpython cpython-extensions cython help-wanted performance python	kne42
Crash if certain non-ascii characters in model file.	lanl/PyBNF	minor	emitra17
Add documentation on cli commands (including piping)	scikit-hep/pyhf	asymptotic-formulas closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
a manpage for `envml` command	cea-hpc/modules	documentation environment environment-modules hpc module modulefiles shell tcl	cmarqu
Special cases in iterable unpacking	cython/cython	Python-Semantics big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
multiple usage of same keyword (IDL --> duplicate keyword)	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Output file	symmy596/SurfinPy	density-functional-theory thermodynamic-properties	symmy596
Move pointing logic out of state	panoptes/POCS	State-Machine astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Least squares fit to speed up sampler	sblunt/orbitize	enhancement help-wanted	sblunt
when ~ncores=1, Parmap should not fork	rdicosmo/parmap	Good-first-issue enhancement	UnixJunkie
Test all public methods of classes (mainly pdf.Model)	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
DOC: Generating docs doesn't work if path has whitespaces	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
Document the container types	numba/numba	compiler cuda doc easy feature_request llvm numba numpy parallel python	stuartarchibald
Print what files you created when using -v mode	kblin/ncbi-acc-download	enhancement help-wanted	tseemann
Make sure testing is covering entire state machine	panoptes/POCS	State-Machine Testing astronomy bug citizen-science exoplantes panoptes python telescopes	wtgee
Improve code coverage	ropensci/jstor	hacktoberfest help-wanted jstor peer-reviewed r r-package rstats text-analysis text-mining	tklebel
generate quality circuit diagrams	ECSHackWeek/impedance.py	ECS-Hack-Week battery corrosion electrochemistry fuel-cell impedance lithium-ion	mdmurbach
Check data types for SONATA export	NeuralEnsemble/PyNN	sonata	apdavison
Handle spatial information when importing SONATA networks	NeuralEnsemble/PyNN	sonata	apdavison
Wrap coordinates into fractional coordinates	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Explanations within the examples	qpv-research-group/solcore5	hacktoberfest help-wanted photovoltaic python semiconductor solar-cells	dalonsoa
Feature Request: GPUOptions for Go binding	tensorflow/tensorflow	deep-learning deep-neural-networks distributed machine-learning ml neural-network python statcontribution-welcome tensorflow typefeature	mattn
[FR] Error messages should be more specific	pyro-ppl/pyro	bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference warnings-&-errors	fritzo
Call for User-Contributed Examples and Tutorials!	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning documentation help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	martinjankowiak
Exposing mu to the services (stepsize warmup)	stan-dev/stan	algorithm bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan	Tuxonomics
IPython directive should strip ansi escape sequence from output.	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	Carreau
Add tests for code2 and code4 validation (with additional checks on code4's alpha0)	scikit-hep/pyhf	asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Lint error on python version constraint no-noarch	conda-forge/conda-smithy	continuous-integration hacktoberfest linter	CJ-Wright
Support `numpy.tile`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Set `DATAPATH` for tests	healpy/healpy	Good-first-issue	zonca
SOBEL & clang : many complains; tests mising for SOBEL, PREWITT & ROBERTS	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Document NUMBA_CACHE_DIR	numba/numba	Task caching compiler cuda doc llvm numba numpy parallel python	sklam
Target Field names cannot be all numbers	panoptes/POCS	astronomy bug citizen-science exoplantes panoptes python telescopes	wtgee
Allow user to choose parser in get_spec and get_metadata	ropensci/lightr	Type-enhancement file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Add more options to the dictionary	ropenscilabs/gendercoder	enhancement gender-diversity help-wanted ozunconf18 r r-package rstats unconf	ekothe
Implement Support for "Hermite EETF" as per "BT.2390-4".	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	sobotka
Cache constant frozen-sets	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython performance python	scoder
SBML timeout not supported if PyBNF installed through PyPI	lanl/PyBNF	enhancement	emitra17
Add option for auto None & nan imputation for categorical features	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	chanansh
Post an issue	andyphilips/dynamac	ardl r stata time-series time-series-analysis	andyphilips
silence warnings PDBConstructionWarning in test_PDB_StructureAlignment.py	biopython/biopython	Testing bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	peterjc
Batching Gaussian Processes	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	mileslucas
Include tutorial and docs for `datetime` time format	IAMconsortium/pyam	analysis datetime energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	danielhuppmann
Add boundary optimized operators of Mattsson, Almquist, and van der Weide	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
[Docs?] Numba creates multiple Python objects for an object returned more than once	numba/numba	compiler cuda doc easy llvm numba numpy parallel python	asodeur
Benchmark scattering mask data vs transmitting pickled mask factories	LiberTEM/LiberTEM	data-processing electron-microscopy enhancement future image-processing python	uellue
GPU modules are listed as available even if `ITK_USE_GPU` is `OFF`	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	fbudin69500
plot_mesh.py is undocumented in Wiki and might not show plot	PrincetonUniversity/athena	bug documentation visualization	felker
Add warnings about "obviously unintended" code	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython feature help-wanted performance python	scoder
Create an Acknowledgements section for the README	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing statusUse_Milestone_Backlog typeDocumentation	thewtex
Intuitively manage column-wise WCS coordinates	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy coordinates io.fits python science wcs	matteobachetti
Implement copy_to_host() for negative strided array	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	sklam
Document LabelObject perimeter computations	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	blowekamp
Wild Bootstrap	lanl/PyBNF	enhancement	emitra17
convolve_fft defaults and documentation	astropy/astropy	Docs Feature-Request Hacktoberfest astronomy astrophysics astropy convolution python science	astromark
Overload the stream insertion operator for types that are missing it	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure	jhlegarreta
Parse strings as multi-element data structures in tests	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure	jhlegarreta
Add documentation for class attributes to docstrings	duetosymmetry/qnm	black-holes general-relativity numerical-methods physics python scientific-computing	duetosymmetry
Regressing out genes	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	joshuahwu
Raise Warning if the Capacity Array is Not Set But `mapc2p` is	clawpack/pyclaw	feature finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno	mandli
Speed up relative re-imports into absolute imports	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
Add support for `np.matmul`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Bad error messages in ClassifierChain on multioutput multiclass	scikit-learn/scikit-learn	data-analysis data-science machine-learning modulemultioutput python statistics	amueller
Embedded signature doc behavior for classes different from regular Python	cython/cython	Cython-Language-Feature big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	david-cortes
"cannot determine Numba type" when calling AOT-compiled function from AOT-compiled function	numba/numba	AOT bug compiler cuda doc llvm numba numpy parallel python	nmgeek
Cythonize/Cython compilation fails to import/recognize `.pxd` from external modules that only have `__init__.so`	cython/cython	Build-System big-data c cpp cpython cpython-extensions cython enhancement performance python	ghost
jit all the functions which are slow	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation performance perihelion space-physics	shreyasbapat
oldmin/oldmax aren't handled properly	InsightSoftwareConsortium/ITK	Good-first-issue areaIO cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement	tashrifbillah
Add quantitative tests to `itk::FastMarchingImageFilterBase`	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage	jhlegarreta
Add support for NumPy `insert`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
cache files should be aware of EXOSIMS version	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Reword documentation	lucydot/effmass	documentation	lucydot
Fix Link	lucydot/effmass	documentation	lucydot
deduplication of louvain and leiden doc	scverse/scanpy	Area---Documentation-📒 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	fbnrst
Random seed should be encoded as a random generator object in SimulatedUniverse	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Warning spam from pybnf dependencies	lanl/PyBNF		emitra17
error while saving geodataframe as mapinfo .tab file	geopandas/geopandas	geoparquet geospatial pandas python spatial	ghost
numpy isin	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	machineko
Inconsistency in finding blocked reactions	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology flux metabolic-models metabolic-network metabolism modeling needs-information python sbml sbml-model sbml-simulation strain-engineering systems-biology	hvdinh16
potential Doc2Vec feature: reverse inference, to synthesize doc/summary words	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling wishlist word-embeddings word-similarity word2vec	gojomo
dagp_plot is not scaleable	flyaflya/causact	bayesian-inference dags enhancement help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package	flyaflya
Make meaningfulLabels = FALSE argument work in dag_greta()	flyaflya/causact	bayesian-inference dags help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package	flyaflya
Recipe documentation	mosdef-hub/mbuild	Recipes documentation enhancement maintenance mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Standardize documentation in `Utilities` scripts	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Add version changed for API changes	astropy/astropy	Docs Hacktoberfest Package-novice astronomy astrophysics astropy python science	taldcroft
Breaking change: allow input decks to work for both 2D and 3D	ECP-WarpX/WarpX	gpu hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Use Resample over WarpImageFilter in Examples	InsightSoftwareConsortium/ITK	Good-first-issue areaRegistration cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing	blowekamp
Consider pipx as recommended installation method	scikit-hep/pyhf	asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Linter should hint about wrapping text	conda-forge/conda-smithy	Hacktoberfest continuous-integration enhancement hacktoberfest help-wanted linter	isuruf
Systematic breakdown table	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Importing Keras when loading dataset	mirapy-org/mirapy	astronomy autoencoder bug classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	swapsha96
Document how to get complete document distribution from LDA	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	Antupis
meta-issue: All NumPy functions with no implementation	numba/numba	compiler cuda easy feature_request good-second-issue llvm numba numpy parallel python	stuartarchibald
look at merge cycler and make sure it works with any combination of pseudo-axis	bluesky/bluesky	bluesky dataacquisition hackathon python	awalter-bnl
Add references to docstrings	hoechenberger/questplus	doc enhancement psychology psychophysics	hoechenberger
Normalization edge case	lanl/PyBNF		emitra17
Finish GUI integration	lanl/PyBNF	enhancement	emitra17
Moving from autograd to jax	mirapy-org/mirapy	astronomy autoencoder classification curve-fitting deep-learning enhancement htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	ericmjl
Test coverage of special parameterizations	netsiphd/netrd	enhancement	sdmccabe
Installation instructions should ensure that the terminal preferred encoding is UTF8	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows	giovannipizzi
Test delve on Keras linear regression problem	delve-team/delve	convolutional-neural-networks deep-learning layer-saturation model-training neural-dynamics pruning pytorch training-monitor visualization	JustinShenk
Testing trained models life VGG, Inception etc with HTRU1 dataset	mirapy-org/mirapy	astronomy autoencoder classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	swapsha96
Flattening Dask Arrays without spreading out chunks	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	jakirkham
Address Todo items in AzimuthElevationToCartesianTransform	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDesign	hjmjohnson
Consider adding __repr__ methods to all classes	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Add predict_proba for CatBoostClassifier in Java API	catboost/catboost	JVM-Applier big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	ancasarb
Upgrade poor handling of missionSchedule in init_OB	dsavransky/EXOSIMS	enhancement help-wanted	deanthedream
Remove similar code for command-line argument handling	idaholab/moose	Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
ONNX export doesn't support categorical features	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	wboleksii
bug in gensim.summarization.mz_entropy.mz_keywords	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	bbaranow
Improve PythonUnitTest test separation option	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Improve ApplyScriptToRemotes.sh script's robustness	InsightSoftwareConsortium/ITK	Good-first-issue areaRemotes cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	jhlegarreta
Provide a way to enable both quantity_support and time_support in one go	astropy/astropy	Enhancement astronomy astrophysics astropy python science visualization	astrofrog
WordEmbeddingsKeyedVectors.add() doesn't clear `vectors_norm`, causing `IndexError` on later `most_similar()`	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-MEDIUM information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	gojomo
lsmagic returns JSON which makes for awkward UX in JupyterLab	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	fperez
Read more Line Databases (ExoMol, Chianti, NIST, GEISA, etc.)	radis/radis	astrophysics closember combustion databases enhancement exoplanets help-wanted hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 💡gsoc 🤔🤔.	erwanp
Implement mean for Series[datetime64[ns]] and DatetimeIndex	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy	TomAugspurger
Type highlighting in `inspect_types`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Support numpy.isnan and numpy.isnat in cuda.jit kernels	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	kkraus14
Indexing on series where index is output from pd.cut	pandas-dev/pandas	Indexing Needs-Tests alignment data-analysis data-science flexible pandas python	kuchenrolle
WikiCorpus.filter_wiki/remove_markup don't remove heading-markup	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim help-wanted impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	0x0badc0de
Documentation example doesn't work	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython performance python	realead
extend append() for updating existing data	IAMconsortium/pyam	analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
hasMaterialProperty depends on order in the input file	idaholab/moose	C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	tophmatthews
ImageDiff and Structrual Similarity	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
use array_like instead of numeric/array-like	pvlib/pvlib-python	documentation help-wanted photovoltaic python renewable-energy renewables solar-energy	wholmgren
AAVSO Light Curves	snad-space/ztf-viewer	enhancement	hombit
Create a list of reader/writer names	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager enhancement music noise speech speech-recognition	ynop
Fix PR02 issues in docstrings	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
DOC: Fix formatting errors in docstrings	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
add test for case-insensitive logic in DUStructDesc::AddTag	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
ElementGenerator test improvement	idaholab/moose	C-Framework C-Meshing Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Use SI units everywhere in the WarpX documentation	ECP-WarpX/WarpX	component-documentation gpu hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Various methods don't call call __finalize__	pandas-dev/pandas	Bug alignment data-analysis data-science flexible metadata pandas python	TomAugspurger
ENH: Improvements to new ARIMA-type estimators	statsmodels/statsmodels	comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	ChadFulton
Consider astroalign for tracking corrections	panoptes/POCS	Enhancement astronomy citizen-science exoplantes mount panoptes python telescopes	wtgee
How to toggle the toolbar?	jupyterlab/jupyterlab	enhancement help-wanted jupyter jupyterlab	Yura52
Bounds checking for shapes in GUI	LiberTEM/LiberTEM	GUI data-processing electron-microscopy image-processing python	uellue
Document reproducibility guarantees	lmcinnes/umap	0.4 dimensionality-reduction documentation machine-learning topological-data-analysis umap visualization	tomwhite
Storage class in MOOSEDocs should have a late initialization routine.	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Add aliases for common accessors	scikit-hep/pyhf	API asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch refactor scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Add coverage to pdf.Model.expected_auxdata and pdf.Model.mainlogpdf	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
ENH: Update `qcircuit` version for LaTeX circuit visualization and consider `Quantikz`	qutip/qutip	ENH Q&A code python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
Type Annotations	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Check urls of datasets in code and documentation	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition	ynop
Broken link to "Edit on Github" in ipython documentation	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0	btel
Add unit test for pattern.apply()	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	uppittu11
Park unless pointing withing threshold	panoptes/POCS	State-Machine astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Add realistic spacecraft attitude motion	SISPO-developers/sispo	enhancement	YgabrielsY
Associate file type to an existing text editor syntax highlight or a custom one.	jupyterlab/jupyterlab	documentation jupyter jupyterlab	willibix
Implement python logging for output/debugging instead of print().	grd349/PBjam	enhancement	alexlyttle
word2vec doc-comment example of KeyedVectors usage broken	RaRe-Technologies/gensim	data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	gojomo
solution.Solution -- cannot pass `frame=` as kwarg	clawpack/pyclaw	Bug finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno	rjleveque
Implement .copy() for DeviceNDArray	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
Implement `.ravel()` on non-contiguous data	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
startingMonth ignored on non-unitary Quarter periods	pandas-dev/pandas	Frequency Needs-Tests Resample alignment data-analysis data-science flexible pandas python	aulemahal
Sum and difference bodies	glotzerlab/coxeter	computational-geometry enhancement geometry physics polygons polyhedra shapes	b-butler
Mass conversion (200c vs 200m)	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit	syasini
Add checks whether orekit is running properly	SISPO-developers/sispo	enhancement	YgabrielsY
add test for READ_CSV	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
Clean up warnings in doc build	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	TomAugspurger
Add AUX file parsing	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	abirchfield
Consistent names for reference kwargs	pvlib/pvlib-python	api documentation photovoltaic python renewable-energy renewables solar-energy	cwhanse
Size of output cell in scroll mode	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgcells	TimoTrefzer
markdown fontsize config not having any affect in notebook	jupyterlab/jupyterlab	help-wanted jupyter jupyterlab tagCSS tagDesign-and-UX tagSettings	jpmorr
Implement ColumnDescriptionClass	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	Noxoomo
fix: avoid scrambling of group members	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology	BenjaSanchez
reorder prior update and posterior updates for kalman	tbrown122387/pf	particle-filter statistical-methods statistical-models statistics	tbrown122387
Revise decorators to allow for docstring rendering	scikit-hep/pyhf	asymptotic-formulas bug closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
add call outs to all references in docstrings	pvlib/pvlib-python	documentation help-wanted photovoltaic python renewable-energy renewables solar-energy	wholmgren
xml2json recursively search for the root data file	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Suggestion for Catboost Tutorial	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	dennislamcv1
Move fast logger to wc_utils	KarrLab/de_sim	computational-modelling data-driven-model discrete-event-simulation enhancement object-oriented-programming python simulation	artgoldberg
multi-key shortcuts with different modifiers in each don't work	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgshortcuts tagKeyboard	amosbird
Check the language, clarity and consistency of documentation	adbar/htmldate	date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph up-for-grabs web-scraping webscraping	adbar
Test htmldate on further web pages and report bugs	adbar/htmldate	date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph up-for-grabs web-scraping webscraping	adbar
LONG TERM TODO LIST	radis/radis	astrophysics ci-dev closember combustion databases enhancement exoplanets help-wanted hitemp hitran infrared interface physics plasma plasma-physics radiation refactor spectra spectroscopy 😎. 🤔🤔.	erwanp
Add a simulator that estimates a plan's storage requirements.	bluesky/bluesky	bluesky dataacquisition hackathon python	danielballan
Support erfcx	google/jax	enhancement jax	cossio
Allow arbitrary units in Spectrum methods	radis/radis	astrophysics closember combustion exoplanets hitemp hitran infrared interface plasma plasma-physics post-process radiation spectra spectroscopy 😎.	erwanp
TestHarness should be able to start directory walking in another directory	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
refactor lumen.js	lumen-org/lumen	web-application	nandaloo
Improve test coverage	radis/radis	astrophysics ci-dev closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy	erwanp
collect_results! : path	JuliaDynamics/DrWatson.jl	hacktoberfest improvement project-assistant project-management science science-research setup-tool simulations	JonasIsensee
Inconsistent documentation of boxes	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis documentation molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis	vyasr
CUDA: pinned_array_like, pinned_zeroes, pinned_ones, etc. would be handy	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	gmarkall
Add more extract providers	ropensci/osmextract	geo geofabrik-zone help-wanted open-data osm osm-pbf r rstats	Robinlovelace
How can I disable filename abbreviations in the results of tab-autocompletion?	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	cxrodgers
Unify files used in force field validation	mosdef-hub/foyer	atom-typing disseminating-forcefields force-field foyer molecular-dynamics molecular-simulation python testing	mattwthompson
Assigning to DeviceNDArray with Ellipsis fails	numba/numba	CUDA bug compiler cuda llvm numba numpy parallel python	jakirkham
Add more explicit warning when input file is a csv file without `sep = ","`	ropensci/lightr	Scope-UX/docs file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Potential lingering issues with XYZ files	mosdef-hub/mbuild	low-priority mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Suggestion : Run checkm on more than 1 MAG at a time	CAMI-challenge/CAMITAX	enhancement	michoug
Function of len() is invalid to dynamic share array	numba/numba	CUDA Task compiler cuda llvm numba numpy parallel python	mantouRobot
execute doctests in our continuous integration setup	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
hdf_open - error reporting	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf4 hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
interacting with the file system using pathlib instead of os.path	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	JessicaS11
Add second order element capability to MeshGenerators	idaholab/moose	C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	dschwen
update and expand our automated testing functions	icesat2py/icepyx	closember community-driven hacktoberfest help-wanted icesat-2 python3	JessicaS11
Document How Links are Handled in Notebook	jupyterlab/jupyterlab	documentation help-wanted jupyter jupyterlab	saulshanabrook
Improve interface for AUX data	LiberTEM/LiberTEM	UX/DX data-processing design docs electron-microscopy image-processing python	uellue
DOCUMENTATION TODO LIST	radis/radis	astrophysics ci-dev closember combustion documentation exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 😎.	erwanp
Add documentation for get_diagnostics()	LiberTEM/LiberTEM	UX/DX data-processing electron-microscopy image-processing python	uellue
WASM SIMD implementations of SSE	simd-everywhere/simde	GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Not working on Lineage OS 15.1 / 16	TrackerControl/tracker-control-android	android privacy tracking-protection	kasnder
Accession range support?	kblin/ncbi-acc-download	enhancement help-wanted	peterjc
WEB: Multiple "Getting Started" on pandas.io leads to different links	pandas-dev/pandas	Web alignment data-analysis data-science flexible pandas python	mroeschke
Better empty state experience	LiberTEM/LiberTEM	GUI data-processing electron-microscopy image-processing python	sk1p
Instrument should be selectable rgb/monochrome	SISPO-developers/sispo		YgabrielsY
show total number of parameters (not only parsets) in pyhf inspect	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
Improve `dfply` test suite	zdelrosario/py_grama	enhancement uq	zdelrosario
Read configuration from log files	SISPO-developers/sispo		YgabrielsY
Find intermediate results	SISPO-developers/sispo		YgabrielsY
Tutorials/examples/documentation	mosdef-hub/mbuild	discussion documentation enhancement formatting mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	chrisiacovella
Sidebar toggle to show labels for all tips in tree	nextstrain/auspice	please-take-this-issue source-discussion-forum source-office-hours	jameshadfield
Update Level Set module to use vector variables	idaholab/moose	C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
AVX-512BW functions	simd-everywhere/simde	GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
downloaded file unzipping and sorting	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	JessicaS11
Improve autolink to files in MooseDocs	idaholab/moose	C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Support for Taqman / hydrolysis / multi-colour probes	ropensci/tidyqpcr	enhancement help-wanted miqe qpcr qpcr-analysis r r-package rstats tidyverse	ewallace
Improve name of InputParameters::registerBase	idaholab/moose	C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Create reduction mode straight from files instead of requiring user config sheet	arjunsavel/SImMER	astronomical-images astronomy astrophysics enhancement python stars	arjunsavel
"Remembering" the previous selection of a wide binary	arjunsavel/SImMER	astronomical-images astronomy astrophysics enhancement python stars	arjunsavel
Periodic wavelet collocation operators	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Improved Export/Download support	LiberTEM/LiberTEM	GUI data-processing electron-microscopy enhancement image-processing python	sk1p
Parallelism of calculations in pyhf ala joblib (or similar)	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Support running of unit tests from main run_tests	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Centralize all MooseDocs media into large_media	idaholab/moose	C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Upwind SBP operators of Mattsson (2017)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Change logo :)	MolMeDB/MolMeDB	cheminformatics chemistry database lipids membranes permeability small-molecule	KarelBerka
Issues with ingest	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	andreatangherloni
PAGA connectivity score	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	rsggsr
Add Werror flag to Setup	cython/cython	Testing big-data c cpp cpython cpython-extensions cython help-wanted performance python	WillAyd
[Feature Req.] power spectrum function in py21cmfast	21cmfast/21cmFAST	context-python-wrapper	NGillet
Trimming links with length less than scene pixel resolution	jonschwenk/RivGraph	enhancement manuscript python	Lvulis
Document how to embed Cython modules in C/C++ applications	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
Automatic island filtering by island vs channel size.	jonschwenk/RivGraph	documentation enhancement manuscript python	Lvulis
implement a cosine-based repulsive force	open2c/polychrom	chromatin chromosomes enhancement hi-c loop-extrusion polymer simulation	golobor
Christoffel Symbols are no tensor!	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic	andi8086
pl.violin will not take "hue" kwarg for seaborn?	scverse/scanpy	Area---Plotting-🌺 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	auesro
GUI: Selector handle behavior	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Better warnings for command line arguments that exist for compatibility	smithlabcode/falco		moldach
NaN returned during exchange maintenance	freqtrade/freqtrade	Enhancement Good-first-issue RPC algorithmic-trading bitcoin cryptocurrencies cryptocurrency freqtrade python telegram-bot trade trading-bot	sanket-k
Add Data Attribute for Cell Tags	jupyterlab/jupyterlab	enhancement help-wanted jupyter jupyterlab pkgcells	blink1073
DOC: Single Document For Code Guidelines	pandas-dev/pandas	Code-Style Docs alignment data-analysis data-science flexible pandas python	Stockfoot
Split filter() into two functions	tbrown122387/pf	enhancement particle-filter statistical-methods statistical-models statistics	tbrown122387
Add more compile time checks	tbrown122387/pf	enhancement help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
Implement support for various photoreceptor models.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Warn about unraisable exceptions where they occur	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython enhancement performance python	scoder
sc.pl.paga: TypeError: paga() got an unexpected keyword argument 'ncols'	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	YubinXie
Implement support for "oRGB: A Practical Opponent Color Space for Computer Graphics".	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Support target tags	panoptes/POCS	Enhancement Help-Wanted astronomy citizen-science config exoplantes panoptes python scheduler telescopes	wtgee
Need test coverage of all functions	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
deprecated parameter in tests file appears to be ignored	idaholab/moose	C-TestHarness Good-first-issue P-normal T-defect T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	bwspenc
Make testing more robust especially for random objects	qutip/qutip	ENH Q&A help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
PDD solver: error in the documentation on how to access the output	qpv-research-group/solcore5	Documentation hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Check "truth" of CIF exporter	Materials-Consortia/optimade-python-tools	adapters openapi optimade optimade-api optimade-python optimade-specification priority/medium python tests	CasperWA
Usage with Shelter Sandbox	TrackerControl/tracker-control-android	android privacy tracking-protection	m37r
Plotting for QUfitting and RMclean1d	CIRADA-Tools/RM-Tools	enhancement	Cameron-Van-Eck
Add thumbnails for tutorials/gallery where missing	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	story645
Complete Implementation IfcFacetedBrep converter	tumcms/Open-Infra-Platform	IFC boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	hechth
Chain TrackerControl with other VPN services, such as ProtonVPN	TrackerControl/tracker-control-android	android privacy tracking-protection	famewolf
Feature suggestion: visually distinguish (color) cells with a tag	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgcelltags tagDesign-System-CSS	SultanOrazbayev
Missing Node.js error message unclear	jupyterlab/jupyterlab	documentation help-wanted jupyter jupyterlab	big-o
Calling host functions/operators from function with device annotation	parthenon-hpc-lab/parthenon	Kokkos amr bug help-wanted high-performance-computing kokkos parthenon	pgrete
var_context builder	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan	bob-carpenter
Tackle some low-hanging fruit in "test_grammar.py"	cython/cython	Parsing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
Zooming out from a labelled subtree does not correctly update the URL query	nextstrain/auspice	bug	jameshadfield
Consider adding plotly functionalities	qutip/qutip	ENH Q&A code help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
Adding get_memory_manager	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
Implement "rich" output in console and logging	DeltaRCM/pyDeltaRCM	enhancement	amoodie
ValueError: cannot convert float NaN to integer	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	sygongcode
Delete or optimize reconstruction?	parthenon-hpc-lab/parthenon	amr discussion enhancement help-wanted high-performance-computing kokkos parthenon question	pgrete
Use of `IndexRange`s in `par_for` wrappers	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
automate PyPI/conda release using GitHub Actions.	econ-ark/HARK	Expertise-CI Expertise-Open-Source Priority-Low Tag-Installation economics help-wanted	MridulS
Dangerous default arguments in numba	numba/numba	bug compiler cuda llvm numba numpy parallel python	HPLegion
Refactor test suite	arjunsavel/SImMER	astronomical-images astronomy astrophysics python stars testing	arjunsavel
Save for review issues Yes/No answers and slider	pmkruyen/dearscholar	enhancement	Glenn437
BUG: groupby.sum() is inconsistent with df.sum() for large integers	pandas-dev/pandas	Bug Dtype-Conversions Groupby Needs-Tests Reduction-Operations alignment data-analysis data-science flexible pandas python	tom-weiss
Examples for CuPy and Numba.cuda	LiberTEM/LiberTEM	data-processing docs electron-microscopy image-processing python	uellue
Complete readme file	SCIInstitute/UncertainSCI	documentation	dcwhite
readthedocs: "Tutorials"	NathanSandford/Chem-I-Calc	documentation help-wanted	NathanSandford
Custom c++ metric Run Problem	catboost/catboost	big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial	gavrenkov
simplify and document code --- code review	gnudatalanguage/gdl	antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Warnings	snowformatics/macrobot	computer-vision enhancement image-analysis plant-pathogen-interactions python	snowformatics
NERSC Software Package	spack/spack	build-tools ecp feature hpc hpsf linux macos nersc package-manager python radiuss scientific-computing spack windows	shahzebsiddiqui
Adding markdown links to OpenAPI schema	Materials-Consortia/optimade-python-tools	OpenAPI docs openapi optimade optimade-api optimade-python optimade-specification priority/low python schema	CasperWA
Eliminate `get_providers` and put similar functions into `optimade.server.data`	Materials-Consortia/optimade-python-tools	enhancement openapi optimade optimade-api optimade-python optimade-specification priority/low python suggestions	CasperWA
Launch Binder button does not work.	vaexio/vaex	bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	adrienpacifico
clone more legend settings when regenerating in Qt figure options dialog	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
Implement zoom and horizontal scrolling for sequence views	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add "scroll to top" button	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Better input TSV validation	open2c/cooler	3d-genome bioinformatics chromatin contact-matrix cooler enhancement file-format genomics hdf5 hi-c ngs python sparse	nvictus
Include csv result table in report	snowformatics/macrobot	computer-vision enhancement image-analysis plant-pathogen-interactions python	snowformatics
Implement persistent informational widgets	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Implement expandable rows ("row accordion")	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Implement sticky tooltips	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Link mutations to nextstrain.org	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add ability to cancel current task	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Using Python type hints	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch testing usability variational-inference warnings-&-errors	jpchen
custom logging level for numba internals.	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Investigate use of testbook for testing Jupyter notebooks	scikit-hep/pyhf	SciPy-Conference asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
Utility request: preprocessing step of Lancaster et al.	JuliaDynamics/TimeseriesSurrogates.jl	enhancement hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries	Datseris
Add marker showing current mouse position in sequences and gene map	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Attach gene map to the bottom-most sequence	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
[DOC] Add docstring for split_out and split_every in dask groupby-aggregate API	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	VibhuJawa
Equality tests on floats: add support for math.isclose() and numpy.isclose()	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	alexandrehuat
Add status panel showing current filtering and sorting criteria and number of sequences displayed out of total	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add filtering and sorting reset button(s)	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Einasto Profile	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
Factorize NFW profiles	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
Add tSZ to Battaglia16	syasini/AstroPaint	astrophysical-signals cosmology enhancement halo-catalog python simulation-toolkit	syasini
Add more tests	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit test	syasini
Variable column width	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add new coordinate and metric classes	einsteinpy/einsteinpy	coordinates enhancement general-relativity geodesics gravitational-physics hacktoberfest metric new-feature orbital-simulation perihelion research space-physics	JeS24
GUI: ROI selector bug	LiberTEM/LiberTEM	GUI bug data-processing electron-microscopy image-processing python	anandbaburajan
Wouldn't it be nice if we can visualize the results of `models` instead of just looking at the table?	shankarpandala/lazypredict	automl classification enhancement machine-learning regression	vidyap-xgboost
[FEATURE-REQUEST] Support netCDF-4 files	vaexio/vaex	bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	snitramodranoel
Check for extraneous tensor casts with "data" handling	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Paint qSZ using Line Integral Convolution	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
WXCairo backend not rendering nicely on retina	matplotlib/matplotlib	Difficulty-Medium GUI-wx Good-first-issue OS-Apple data-science data-visualization gtk matplotlib plotting python qt tk wx	eliclement
Adjoints of FEOperators	gridap/Gridap.jl	enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes	santiagobadia
Loading json schema via pkgutil	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	alexander-held
Support zero-length arrays in numba.cuda	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	eric-wieser
change to standard NLL fit objective	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
Replace Eigen pointers with iterators	GeomScale/volesti	Hacktoberfest cran finance geometry hit-and-run monte-carlo optimization polyhedral-computations polytope random-walk sampling scientific-computing statistics volume	TolisChal
BUG: read_sql no longer works simply with SqlAlchemy selectables and a quick fix	pandas-dev/pandas	IO-SQL Needs-Tests alignment data-analysis data-science flexible pandas python	machow
DOC: `.str.cat` output in case of `Index` object	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	galipremsagar
Evaluate PDE solution	gridap/Gridap.jl	enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes	jw3126
Update `examples` folder to include localization.	jupyterlab/jupyterlab	jupyter jupyterlab maintenance tagExamples	goanpeca
Audio Data Loading [FEATURE-REQUEST]	vaexio/vaex	bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	eladmw
Case sensitive input parsing	parthenon-hpc-lab/parthenon	amr documentation help-wanted high-performance-computing invalid kokkos parthenon question refactor	jdolence
cut mask (experiment footprint) based on input keyword	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit	syasini
column types not consistent in etox_targets()	ropensci/webchem	bug cas-number chemical-information chemspider consistent-api identifier r r-package ropensci rstats webscraping	Aariq
Catboost R package does not support calc_feature_statistics	catboost/catboost	R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	benshahararnon
Support simple axes shares in subplot_mosaic	matplotlib/matplotlib	Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk wx	anntzer
Column count of a CSV may be wrong if more columns exist than the first line indicates	jupyterlab/jupyterlab	jupyter jupyterlab pkgcsvviewer	l2radamanthys
Backend option in Compound.save()	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python wontfix	rsdefever
Improve error message for NumPy alias type used as dtype in ArrayNdCtors	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
[REQUEST] Zoom to model	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement ifc infrastructure okstra point-cloud	pjanck
Add examples for run_model methods, add docstrings for ModelChain constants	pvlib/pvlib-python	documentation easy photovoltaic python renewable-energy renewables solar-energy	cwhanse
fix LCA_Database __repr__ so that `None` is not displayed	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
Best-Effort Callback assumes fields is non-empty	bluesky/bluesky	bluesky bug callbacks dataacquisition hackathon python	danielballan
Use barycentric formula for Lagrange interpolation	SciML/DataInterpolations.jl		stevengj
cmfgen2tardis not working	tardis-sn/tardis	astrophysics bug-lady_beetle priority---medium python radiative-transfer science supernova	Knights-Templars
[Feature Req.] Ability to access all perturbed velocity components (also alternate line-of-sight direction)	21cmfast/21cmFAST	context-python-wrapper	BradGreig
`cmake` linting is not the same as the linting in the CI	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon	Yurlungur
Merge returns duplicate indices	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	tadej-redstone
Move BrownCorpus from word2vec to gensim.corpora	RaRe-Technologies/gensim	data-mining data-science document-similarity fasttext gensim housekeeping information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	piskvorky
Expose weights as parameter wherever relevant in the various Delta E computation definitions.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Expand Generators Module	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Support superquadrics in sdf actor	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Latex support	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Render video frames on a cube	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
GIF support	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Check how shaders affect antialiasing	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Add glow effects	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Add support for fast rotations	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Suggestions for documentation improvements	jump-dev/JuMP.jl	Status-Help-Wanted Type-Documentation conic-programs julia linear-programming mathematical-modelling mathematical-programming mixed-integer-programming modeling-language nonlinear-programming optimization semidefinite-programming	odow
Bash's B is misaligned with the other symbols in he launcher pad (and consider switching to the official Bash icon)	jupyterlab/jupyterlab	Design-System-CSS jupyter jupyterlab	joelostblom
COLORMAP_APPLICABLE	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	PaddyLeahy
Use `PetscRealPart` and `PetscImaginaryPart` in supermeshing.py	firedrakeproject/firedrake	complex	ReubenHill
Render code examples automatically with sphinx_gallery	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference website	eb8680
RF AnnexRepo: extend/unify init_remote and enable_remote	datalad/datalad	RIA/ORA closember data-storage dataset enhancement git-annex python usable	yarikoptic
Performance of _get_relevance()	DeepRank/deeprank	3d-cnn docking enhancement protein-protein-interaction pytorch	NicoRenaud
Cannot use automate_training on Compute Canada cluster	ivadomed/ivadomed		jcohenadad
Check how order parameters treat particles with zero neighbors	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis environment molecular-dynamics monte-carlo-simulation order particle-system python science scientific-computing spatial-analysis	bdice
CUDA: Add accessors for function attributes beyond just register use per thread	numba/numba	CUDA compiler cuda llvm numba numpy parallel python	gmarkall
Document (and smooth over any pain points in) interactive plots during acquisition in Jupyter	bluesky/bluesky	bluesky dataacquisition documentation hackathon python	danielballan
Better error message for `to_csv` with distributed worker and non-local filesystem	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	jsignell
XYZ writer improvements	mosdef-hub/mbuild	enhancement mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	rsdefever
f"Values {list(not_found)}, from {list(indexer)}, " "are not valid obs/ var names or indices."	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	brianpenghe
3D collections do not proper handle `edgecolor='face'`	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-mplot3d wx	tacaswell
Note --max-ppsize for large datasets in preprocess vignette	SchlossLab/mikropml	documentation machine-learning r-package rstats	kelly-sovacool
chopping chains in results class	sblunt/orbitize	enhancement	semaphoreP
Savename expand for nested structs is not working	JuliaDynamics/DrWatson.jl	bug hacktoberfest project-assistant project-management savename science science-research setup-tool simulations	sebastianpech
Better explain the groups param & batch effects in the intro vignette	SchlossLab/mikropml	documentation machine-learning r-package rstats	kelly-sovacool
Why does setting imshow(animated=True) still show an image?	matplotlib/matplotlib	Good-first-issue data-science data-visualization gtk matplotlib plotting python qt status-has-patch tk topic-animation topic-images wx	thomasaarholt
TEOS-10 Accessor Improvement Suggestions	euroargodev/argopy	argo argo-core argo-data argo-floats enhancement help-wanted oceanography python stale	DocOtak
clust_wts does not exist in GDL	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Same script to compute and replot spectra	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared interface plasma plasma-physics radiation spectra spectroscopy	erwanp
Explore Alaska census data	ElectionDataAnalysis/electiondata	common-data-format election election-data	ericmtsai
make model runs end at the time specified.	DeltaRCM/pyDeltaRCM	enhancement	amoodie
Refactor SVI tutorial code from MD code blocks into code cells	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	ab-10
requesting ncols parameter in sc.pl.violin()	scverse/scanpy	Area---Plotting-🌺 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	rpeys
Add an explicit Runge-Kutta method to applications	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
rendering a single/monolithic offlineable html file	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	dpark01
Visualization of closure plots	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
Visualization of the ubox of unum Type I	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
Test US Senate contest totals wherever they exist	ElectionDataAnalysis/electiondata	common-data-format election election-data enhancement	sfsinger19103
Prevent tooltip content from going outside the screen	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priohigh research rna sars-cov-2 science sequences sequencing strain tbug tfeat virus	ivan-aksamentov
Add overflow values to the tests	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
Warn when no observables are present	lanl/PyBNF	enhancement	emitra17
add more hash manipulation utilities to sourmash CLI	sourmash-bio/sourmash	bioinformatics fracminhash good-next-issue hacktoberfest kmer minhash plugin_todo python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
Why do factorial approximations generate different values	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic numerical-investigation octa-precision posit-arithmetic quad-precision quarter-precision question rational-arithmetic	Ravenwater
Feature Request: Support ddof argument in np.nan[std | var]	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	mroeschke
[FEATURE] specify number of trees for shap	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning model-analysis performance python r tutorial	pseudotensor
Stork In Git Repo	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	friedmud
Offset support in Wigner and other visualizations	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Krastanov
Dashline / dotted line actor	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation state-needs-PR typeNew-Feature	skoudoro
Taking too much time to run .	shankarpandala/lazypredict	automl classification help-wanted machine-learning regression	Vinitkumar89
Developer documentation lacks complete installation instructions	nextstrain/augur	bug documentation please-take-this-issue	huddlej
Clean up custom abundance input and documentation	tardis-sn/tardis	astrophysics documentation io model priority---medium python radiative-transfer science supernova	andrewfullard
Re-implement `%preview -r` with the new `sos server` mechanism.	vatlab/sos-notebook	enhancement jupyter-kernels	BoPeng
save chi2 values to results	sblunt/orbitize	enhancement long-term	semaphoreP
custom_metric parameter returns error when set for LazyClassifier	shankarpandala/lazypredict	automl bug classification machine-learning regression	praveenkumar-ravising
Automatically run tests from submodules	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	tophmatthews
allow multi coefficient polynomials	MrMinimal64/multivar_horner	enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	jannikmi
`verdi calcjob cleanworkdir`: Add option for work chain	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/verdi type/feature-request workflow workflow-engine workflows	mbercx
Documentation - return values	uclchem/SpectralRadex	astronomy astrophysics documentation python radex radiative-transfer	jonholdship
Get all modules to pass parallel/distributed/threaded/recover tests	idaholab/moose	C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	loganharbour
Lazypredict package should check for dependencies at installation	shankarpandala/lazypredict	automl classification enhancement machine-learning regression	LaurentBerder
Update release-checklist and move into docs	gvilitechltd/LibSWIFFT	c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft	gvilitech
Migrate from markdown files to docs	gvilitechltd/LibSWIFFT	c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft	gvilitech
Add Calibration from Carroll 1997 QJE	econ-ark/HARK	Feature-Request Function-Calibration economics	Mv77
Handle missing prefixes more elegantly	CLARIAH/grlc	api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui	albertmeronyo
Handle metadata more elegantly	CLARIAH/grlc	api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui	albertmeronyo
STELLAR module: issues with output density	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	jbirky
[REF] All graphical unit tests needs updating	tumcms/Open-Infra-Platform	boost building-information-modelling example-files ifc infrastructure okstra point-cloud refactoring	pjanck
Bounds check for rectangular ROI	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Path input for file browser should be able to open a file directly	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy enhancement image-processing python	uellue
DOC: Reindexing behaviour of dataframe column-assignment missing	pandas-dev/pandas	Docs Indexing alignment data-analysis data-science flexible pandas python	fish-face
DOC: add button to edit on GitHub	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	afeld
Progress bars with simulated hardware	bluesky/bluesky	bluesky dataacquisition hackathon python user-IO	danielballan
Inline example plots in docs	scverse/scanpy	Area---Documentation-📒 Area---Plotting-🌺 Meta anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	ivirshup
Add Windows filesystem support	ml-evs/matador	bug computational-chemistry materials-science python	ml-evs
[feature] implement locally spheroidal surface binding potential	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
reizql: META(filename=...) matcher	reizio/reiz.io	ast-matcher python-ast search-engine source source-code	isidentical
Make image licensing requirements clear	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	emmahodcroft
Add type hints (PEP-484)	SISPO-developers/sispo		YgabrielsY
Add bibtex style citation into readme	SISPO-developers/sispo		YgabrielsY
Add simplified install instructions to readme	SISPO-developers/sispo		YgabrielsY
Keep only typical config files + Standardise them	ivadomed/ivadomed	cardDESIGN_DISCUSSION documentation help-wanted	charleygros
[BUG] Spaces get removed from literal text when reading IFC	tumcms/Open-Infra-Platform	IFC boost bug building-information-modelling early-binding-generator ifc infrastructure okstra point-cloud	pjanck
Minor Documentation Issues	cupy/cupy	catdocument contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priomedium python rocm scipy tensor	kmaehashi
have code error out if metallicities exceed tabulated fsps metallcities	dnarayanan/powderday	enhancement	dnarayanan
dust masses for gizmo with OTF dust	dnarayanan/powderday	bug variable-extinction	dnarayanan
Linear Scheduler Coefficients should be Named quantities in the JSON input	dsavransky/EXOSIMS	enhancement	dsavransky
DOC: Additional items for the cheat sheet	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	Dr-Irv
get rid of unused argument warning	tbrown122387/pf	enhancement help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
Possible conversion issues with large unit cells	Materials-Consortia/optimade-python-tools	adapters bug help-wanted openapi optimade optimade-api optimade-python optimade-specification priority/medium python	CasperWA
Stock price forecasting demo	traja-team/traja	animal-behavior enhancement python spatial-data-analysis time-series-analysis trajectory-analysis	JustinShenk
DOC: follow Google's developer documentation style guide	geopandas/geopandas	documentation geoparquet geospatial pandas python spatial	martinfleis
Add type hints to entity grid	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Implement `_repr_html_` on relevant classes	LiberTEM/LiberTEM	UX/DX data-processing electron-microscopy image-processing python	sk1p
Stencil neighborhood option doesn't support numpy.int64.	numba/numba	ParallelAccelerator compiler cuda llvm lowpriority numba numpy parallel python	DrTodd13
Advertisting: answer to open question about opening binary files	ropensci/lightr	file-import help-wanted r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Implement Guiraud’s Index	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Implement a Hapax Legomena Index	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
write command-line test for `lca summarize --query-from-file`	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling testing	ctb
Document units in writer/reader functions	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Add type hints to givenness	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to lexico semantic norms	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to semantic_measures.py	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to surface_proxies	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to utils	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
NeighborList should be constructible from system-like object and 2D array of bond indices	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis locality molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis	bdice
missing function comfit	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping mpfit netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Improve description of modifier inputs in docs	scikit-hep/pyhf	asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Update all examples with new plotting methods from #1011	LiberTEM/LiberTEM	UX/DX data-processing docs electron-microscopy enhancement image-processing python	uellue
use Kubota & done as an option for AGN spectra	dnarayanan/powderday	enhancement	dnarayanan
Function documentation	ropenscilabs/qcoder	help-wanted r r-package rstats unconf unconf18	elinw
POISE should halt if rotational frequency is close to pericenter angular frequency	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Add output column headers to .forward files	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Read in input files only once	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Printing of output parameters should be limited to those that are requested	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Implement universal POS tags ratio	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio usability	dpalmasan
Allow user to supress reports of missing CandidateContests	ElectionDataAnalysis/electiondata	common-data-format election election-data enhancement user-convenience	sfsinger19103
Allow users to access the PNGs from the web GUI	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy enhancement image-processing python	uellue
`tag!()` always includes name of the last git tag with a message	JuliaDynamics/DrWatson.jl	hacktoberfest low-priority project-assistant project-management saving-files science science-research setup-tool simulations	imLew
Improve handling of PBC info from openbabel	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Improve box handling in pybel tests	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Fix boundingbox check for non-orthogonal boxes	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Improvements to coordinate_transform.py	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Pkg.activate is not enough for forcing correct environment	JuliaDynamics/DrWatson.jl	hacktoberfest project-assistant project-management science science-research setup-tool simulations	fredrikekre
BUG: Spinner updates every 2 steps but advertises as 1 step	astropy/astropy	Bug Effort-low Package-novice astronomy astrophysics astropy python science utils	pllim
Create a way to read project data from a spread sheet	ropenscilabs/qcoder	r r-package rstats unconf unconf18	elinw
Interesting package: scclust	llrs/experDesign	batch cran experiment-design r r-package rstats	llrs
Automatic linestrength cutoff	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared physics plasma plasma-physics radiation spectra spectroscopy 💡gsoc	erwanp
Minimum cell cutoff in sc.pl.dotplot	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	gokceneraslan
Remove the restriction that metric tensor can only be 'uu' or 'll'	einsteinpy/einsteinpy	enhancement general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic tensor	WenyinWei
Smarter error messages from the filtertransformer	Materials-Consortia/optimade-python-tools	enhancement ergonomics openapi optimade optimade-api optimade-python optimade-specification priority/low python server transformers	ml-evs
Initial ice sheets heights shouldn't be negative!	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Make use of rhandsontable's read only features	ropensci/dataspice	data dataset enhancement help-wanted metadata r r-package rstats schema-org unconf unconf18	amoeba
use `world` instead of `usa` for default basemap	ropensci/rinat	inaturalist r r-package rstats spocc	stragu
Untested code in Nodes.py	cython/cython	Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
matplotlib eventplot not shows all the binary data for big number of events	matplotlib/matplotlib	Difficulty-Hard Good-first-issue backend-agg data-science data-visualization gtk matplotlib plotting python qt tk wx	lorenzgutierrez
correlation between celltypes and age	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	FADHLyemen
Add optimized implementations to WASM SIMD128	simd-everywhere/simde	GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Improve response_fields and sort query parameter regexes	Materials-Consortia/optimade-python-tools	ergonomics models openapi optimade optimade-api optimade-python optimade-specification priority/low python schema suggestions	ml-evs
Add random walks to rustworkx	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	nahumsa
Pass detrended_flux and detrended_flux_err directly to constructor	ekaterinailin/AltaiPony	enhancement	ekaterinailin
[ENH] Pythonise the documentation!	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
Support secure DNS	TrackerControl/tracker-control-android	android help-wanted privacy tracking-protection	laurentlbm
Add Colab notebook with examples running on GPU	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo probabilistic-programming sampling-methods	rlouf
Huge data use: Traffic wrongly attributed to TC	TrackerControl/tracker-control-android	android privacy tracking-protection wontfix	ThatIsAPseudo
Calculating Time Resolution	pysat/pysat	cubesat electric-fields enhancement ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science thermosphere	rstoneback
Allow data w missing modalities upon request	ivadomed/ivadomed	feature help-wanted	charleygros
When too many tabs are open in a supanel they overflow	jupyterlab/jupyterlab	jupyter jupyterlab pkgui-components tagDesign-System-CSS	krassowski
Add Automatic tests (CI) on Windows	radis/radis	astrophysics ci-dev closember combustion exoplanets help-wanted hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo	erwanp
Improve list of papers using TARDIS	tardis-sn/tardis	astrophysics documentation python radiative-transfer science supernova	isaacgsmith
ChainRules usage isn't tested	SciML/DataInterpolations.jl		oxinabox
Implement Salience model for Entity Grid	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
PowerNorm should have a scale...	matplotlib/matplotlib	Good-first-issue Maintenance data-science data-visualization gtk matplotlib plotting python qt tk topic-collections-and-mappables topic-color/colorbar wx	jklymak
Document required vs. optional dependencies	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Dekel-Zhao Profile	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
Self interacting dark matter profile deflections	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
Hernquist Light Profile	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
[BUG] 0.29.22: sphinx warnings	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython performance python	kloczek
'report.csv' file as input to VDJtools error	liulab-dfci/TRUST4		wangjiangyuan
doc_path must be unique	ropenscilabs/qcoder	r r-package rstats unconf unconf18	elinw
Warn users about about incompatibility with adblockers and Brave browser	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextclade_web research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Open tree in new tab without requiring new analysis	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	corneliusroemer
Warn users about memory consumption when they try to run on huge datasets	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Document DYLD_FALLBACK_LIBRARY_PATH behavior from Big Sur on	spack/spack	bug build-tools documentation hpc hpsf impact-low linux macOS macos modules package-manager python radiuss scientific-computing spack windows	sethrj
Improve IAU/COSMO documentation in enmap.read_map	simonsobs/pixell	astrophysics cosmology documentation image-processing	zatkins2
Changing x/y/z axis position in a `Axis3`	JuliaPlots/Makie.jl	Axis3 Makie enhancement gpu graphics julia julia-language plotting visualization	Datseris
Add units to BlackBodySimpleSource	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	isaacgsmith
Population.freq and Population.size are returning the weighted hh count not person count	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
Documentation tests	LondonBiofoundry/basicsynbio	help-wanted	hainesm6
Gensim's FastText model reads in unsupported modes from Facebook's FastText	RaRe-Technologies/gensim	bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	mpenkov
_sparse_nanmean is inefficient	scverse/scanpy	Area-–-Performance-🐌 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	ivirshup
[REQUEST] Additional example	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud	pjanck
Explain the calculation of coherence limit in RB	Qiskit/qiskit-experiments	documentation qiskit	ShellyGarion
nice plotting functions?	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement kernel multiset-cca multiview pls pytorch tensor-cca	jameschapman19
FFTW Cleanup	ECP-WarpX/WarpX	backend-openmp component-spectral gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Setup Caching on Travis-CI	radis/radis	astrophysics ci-dev closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo	erwanp
Support jit decorator flags in cc.export (e.g. fastmath)	numba/numba	AOT compiler cuda feature_request llvm numba numpy parallel python	gmarkall
consistency between arguments in docstrings	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	jasmainak
Standardize actors colors (follow-up of #430)	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement	skoudoro
Merge implementations from "missing SSE implementations" to NEON	simd-everywhere/simde	accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Relaxed SIMD support	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
boxplot attributes aren't fully documented	JuliaPlots/Makie.jl	Attributes boxplot documentation gpu graphics julia julia-language plotting visualization	SimonDanisch
Clean tests	fAndreuzzi/BisPy	algorithms bisimulation graph-algorithms graph-theory hacktoberfest help-wanted python	fandreuz
add label alignment to tick_params	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-text topic-ticks-axis-labels wx	story645
Implement vectorized adaptive HMC	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	eb8680
Migrate some examples to a public dataset	LiberTEM/LiberTEM	data-processing docs electron-microscopy image-processing python	uellue
Fix deprecation warning	jonschwenk/RivGraph	manuscript python	jonschwenk
Replace os.path imports with custom helper	datalad/datalad	DX closember data-storage dataset easy git-annex python usable	adswa
Simplify the API	JuliaSmoothOptimizers/PDENLPModels.jl	enhancement	tmigot
overwrite_data=True kwarg ignored when type="constant" in scipy.signal.detrend	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.signal	kkappler
Convergence plots do not show up	tardis-sn/tardis	astrophysics documentation python radiative-transfer science supernova visualization	atharva-2001
[ENH]: move .matplotlib folder from %USERPROFILE% on Windows	matplotlib/matplotlib	Good-first-issue OS-Microsoft data-science data-visualization gtk matplotlib plotting python qt tk wx	Erithax
Docs: 404	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows	m-a-saleh
rewrite git history to remove jupyter notebook outputs	undark-lab/swyft	enhancement help-wanted likelihood-free-inference machine-learning marginal-neural-ratio-estimation neural-ratio-estimation parameter-estimation python pytorch simulation-based-inference truncated-neural-ratio-estimation	bkmi
Switching MetaMorpheus and mzLib from AppVeyor/Jenkins to GitHub Actions?	smith-chem-wisc/MetaMorpheus	Maintenance calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	acesnik
Implement sorting on the backend	Merck/BioPhi	antibody enhancement help-wanted humanization humanness oasis sapiens	prihoda
Functions in Grama throughout are still missing documentation	zdelrosario/py_grama	enhancement uq	OscarDeGar
storing dict in .h5ad should raise warning when keys include '/'	scverse/anndata	Bug-🐛 anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics	MxMstrmn
Preprocessing for EZStat format	ECSHackWeek/impedance.py	battery corrosion electrochemistry enhancement fuel-cell impedance lithium-ion	xraymancs
Should sleep/retry a few times upon 'Network is unreachable'	datalad/datalad	DX closember data-storage dataset git-annex python tests usable	yarikoptic
[REQUEST] New example files OFF / XYZ / BIN	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud	pjanck
Provide instructions on mounting OASis database through Docker	Merck/BioPhi	antibody documentation help-wanted humanization humanness oasis sapiens	prihoda
Add support for uncertainty with microscopy data	ivadomed/ivadomed		mariehbourget
Add user guide/examples/tutorials	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Allow indels in primer detection	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	mcroxen
[Docs] Add landscape images for 2d functions in documentation	sjvrijn/mf2	benchmark-functions benchmark-suite benchmarking-suite documentation multi-fidelity python	sjvrijn
Add CITATION.cff	LiberTEM/LiberTEM	UX/DX data-processing docs electron-microscopy enhancement image-processing infra python	uellue
replace `pytorch_testing_utils` with native PyTorch solution	pmeier/pystiche	Good-first-issue enhancement framework neural-style-transfer python pytorch	pmeier
Possible confusion between current GUI parameters and notebook download	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing notebooks python	uellue
[ENH] download and use horizon data to affect sky diffuse and far shading	pvlib/pvlib-python	enhancement help-wanted io photovoltaic python renewable-energy renewables solar-energy	mikofski
Implement CW_FIELD compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Implement CW_FORM compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Implement CW_PDMENU compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
[REQUEST] Add citation feature	tumcms/Open-Infra-Platform	boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life	pjanck
Make selecting color from a color map easier	JuliaPlots/Makie.jl	Makie User-Interface colors documentation enhancement gpu graphics julia julia-language plotting visualization	cmichelenstrofer
Use point set to shape mapping to improve polygon annotation widget	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
[REQUEST] Rework Contributors	tumcms/Open-Infra-Platform	boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life refactoring	pjanck
ENH: Rename noise keyword argument in redshifts_from_comoving_density function	skypyproject/skypy	astronomy astrophysics cosmology enhancement forward-modeling low-priority module-galaxies skypy	rrjbca
Navigation arrows between individual results	Merck/BioPhi	antibody enhancement humanization humanness oasis sapiens	prihoda
Add unit tests to explicitly test different combinations of data types	sblunt/orbitize	enhancement long-term	sblunt
extracellular times-recording unnecessary	jonescompneurolab/hnn-core	computational-modeling eeg meg neuron-simulator	cjayb
Add new layout methods	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Expand graph operations	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	georgios-ts
Add more centrality measures	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	georgios-ts
Speed up code	ElectionDataAnalysis/electiondata	common-data-format election election-data technical-debt	sfsinger19103
Add support for biologic mpt files	jepegit/cellpy	battery chemistry data-analysis electrochemistry enhancement opensource physics	jepegit
Spack recipe out there?	parthenon-hpc-lab/parthenon	amr enhancement help-wanted high-performance-computing kokkos parthenon	kurtsansom
Deactivate filer icon (eye) missing for date range filters	nextstrain/auspice	enhancement	eharkins
Add option to disable GPUDirect RDMA	parthenon-hpc-lab/parthenon	amr enhancement help-wanted high-performance-computing kokkos parthenon	jlippuner
Add support for class labeling of bbox	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
Use more helpful package tools	Materials-Consortia/optimade-python-tools	CI enhancement ergonomics help-wanted needs-discussion openapi optimade optimade-api optimade-python optimade-specification priority/low python question security suggestions	CasperWA
Setting adata.filename = None doesn't load .X to memory	scverse/anndata	Bug-🐛 anndata bioinformatics data-science machine-learning pinned scanpy scverse topic-backed transcriptomics	Koncopd
can we add namespace when save_model in format cpp?	catboost/catboost	C/C++-applier big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	nickhuangxinyu
add completion on fish shell for `ml` command	cea-hpc/modules	environment environment-modules hpc module modulefiles shell tcl	xdelaruelle
add completion on zsh shell for `ml` command	cea-hpc/modules	environment environment-modules hpc module modulefiles shell tcl	xdelaruelle
better code to pass all arguments of cmake function to `execute_process`	cea-hpc/modules	environment environment-modules hpc module modulefiles shell tcl	xdelaruelle
Triply jagged branches	JuliaHEP/UnROOT.jl	cern-root future hacktober hep high-energy-physics julia particle-physics	aminnj
Improve image labeling for large number of classes	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
%" pipe and "<-" assignment when using IRkernel in JupyterLab" >Add "%>%" pipe and "<-" assignment when using IRkernel in JupyterLab	jupyterlab/jupyterlab	enhancement jupyter jupyterlab	k-motwani
Inefficient handling of burn in phase in sampling functions	GeomScale/volesti	cran finance geometry hit-and-run monte-carlo optimization polyhedral-computations polytope random-walk sampling scientific-computing statistics volume	TolisChal
`num` test failures beyond bit-for-bit differences with intrinsic math	MESAHub/mesa	astronomy astrophysics binary-evolution fortran rainy-day stellar-astrophysics stellar-evolution	warrickball
Account for correlations in Gaia measurements	sblunt/orbitize	enhancement	sblunt
No error is showns when using meshblock/nx2=1 for 2D sims (and similar for 3D)	parthenon-hpc-lab/parthenon	amr bug high-performance-computing kokkos parthenon	pgrete
add deprecation warnings to results plotting methods	sblunt/orbitize	easy	sblunt
Some headers don't compile independently	GeomScale/volesti	Hacktoberfest cran finance geometry hit-and-run monte-carlo polyhedral-computations polytope random-walk sampling scientific-computing statistics volume	abmukh
Add numerical tests for PeakStats	bluesky/bluesky	bluesky dataacquisition hackathon python	prjemian
Use ReadImage and WriteImage functions where appropriate	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle	dzenanz
Confusing, overlapping TestHarness Arguments should be cleaned up	idaholab/moose	C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Add Option To Always Print A TIMED_SECTION	idaholab/moose	C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	friedmud
Full support Of ROI (Regions of Interest)	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	SkippySky
Add parsers for all groups and classes	radis/radis	astrophysics closember combustion dbhitran exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo 😎.	dcmvdbekerom
Ensure doctests are not providing sole coverage for any code	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
plot instantaneous firing rate instead of histogram counts?	jonescompneurolab/hnn-core	computational-modeling eeg meg neuron-simulator	jasmainak
Change formatting style for printed output	atomec-project/atoMEC	atomic-physics density-functional-theory electronic-structure plasma-physics warm-dense-matter	timcallow
Switch to using Typer over Click	scikit-hep/pyhf	CLI asymptotic-formulas build closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
create helper utilities for generating mean flow and demand files from previous runs	IMMM-SFA/mosartwmpy	enhancement	thurber
Updating "file formats" docs for additional clarity?	nanoporetech/megalodon	basecalling documentation epigenetics guppy variant-calling	lyijin
Migrate to importlib.resources files() (version 1.4 / Python 3.9) API	snek5000/snek5000	cfd closember fluiddyn fluidsim jinja2 long-term nek5000 python simulation snakemake snek5000 workflow	ashwinvis
Add METEOR metric	PyTorchLightning/metrics	New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch topic-Text	stancld
[BUG-REPORT] Issue converting object to string	vaexio/vaex	bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file priority-low pyarrow python tabular-data visualization	grafail
consolidate the describe / config caches in RunBundler	bluesky/bluesky	bluesky dataacquisition hackathon maintenance python	tacaswell
add page size checks for sync/async request mode	icesat2py/icepyx	IS2HW_2022 closember community-driven hacktoberfest icesat-2 python3	JessicaS11
[Tracker] Implement all `numpy.*` APIs in CuPy	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
`spack location --build-dir` inconsistency	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager python radiuss scientific-computing spack windows	albestro
chunk_layer is memory-inefficient	aqlaboratory/openfold	alphafold2 enhancement help-wanted protein-structure pytorch	gahdritz
Instructions on how to use core Stan directly in C++	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics documentation stan	rok-cesnovar
More CI compiler versions	bcgsc/btllib	algorithms bioinformatics bloom-filter cpp data-structures enhancement genome library python	vlad0x00
Add an mBuild docs example of changing an existing box's dimensions and angles for the new mbuild.Box's structure.	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	bc118
Compute Table Reset Improvements	munich-quantum-toolkit/core	DD enhancement mqt quantum-computing quantum-intermediate-representation tum	burgholzer
GPU accelerated training not available during multitasking and model retraining	catboost/catboost	GPU big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	JHlozek
Allow setting the `title` property of the label surrounding the `RadioItem` and `Checklist` choices.	plotly/dash	P3 bioinformatics charting dash data-science data-visualization documentation feature finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	mjstahlberg
Extend Callback Interface	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	ayulockin
dashtable with pagination: tooltips appear in wrong place	plotly/dash	P3 bioinformatics bug charting dash dash-data-table data-science data-visualization finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	HeinerTholen
Update shell script outputs to match the CWL output format	sanctuuary/APE	automated-pipeline java program-synthesis workflow-synthesis	vedran-kasalica
[BUG-REPORT] str.replace(..., regex=True) : can't use capture group in repl str	vaexio/vaex	bigdata bug data-science dataframe enhancement hdf5 machine-learning machinelearning memory-mapped-file priority-medium pyarrow python tabular-data visualization	Binger-cn
Is "do_spin_temp" a valid parameter for run_coeval?	21cmfast/21cmFAST	context-python-wrapper priority-medium	oscarhdz7
Add docs that show new features of the Results class	sblunt/orbitize	easy enhancement	semaphoreP
Test default default cases for strongly typed enum serialization	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage typeTesting	jhlegarreta
cleanup switch in hdf5_fun.cpp	gnudatalanguage/gdl	Low-priority antlr astronomy cleanup data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Issues with compiling SU2 on Windows 10	su2code/SU2	c-plus-plus cfd documentation enhancement flow fluid fluid-dynamics hpc opensource optimization physics python simulation	GabrieleMorvillo
Support more interpolation methods in `cupy.percentile` and `cupy.quantile`	cupy/cupy	contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	takagi
Reprs on formatters and locaters	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-ticks-axis-labels wx	story645
Fix examples and CI integration	GeomScale/volesti	cran example finance geometry help-wanted hit-and-run monte-carlo polyhedral-computations polytope random-walk sampling scientific-computing statistics volume	vissarion
Document somewhere how to make a new release	atomec-project/atoMEC	atomic-physics density-functional-theory electronic-structure enhancement not-critical plasma-physics warm-dense-matter	DanielKotik
Representations for objects	mad-lab-fau/tpcp	algorithms biosignals data-management data-science help-wanted machine-learning python	AKuederle
Port NumPyro introductory examples to Pyro	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	eb8680
✨ Support for the powering modifier of OpenQASM 3.0	munich-quantum-toolkit/core	Core enhancement mqt quantum-computing quantum-intermediate-representation tum	burgholzer
Low-memory attention a little slow	aqlaboratory/openfold	alphafold2 enhancement help-wanted protein-structure pytorch	gahdritz
Add examples or better documents to use extendr in submodules	extendr/extendr	api-wrapper documentation extension ffi-bindings r rust	yutannihilation
Parser should provide useful warnings	lanl/singularity-eos	enhancement help-wanted	Yurlungur
Support build avatars sourced from non-GitHub URLs	nextstrain/auspice	enhancement	huddlej
MCMC burn in/number of steps tutorial	sblunt/orbitize	easy enhancement	sblunt
[REF] Paths Variable in ProfileConverter	tumcms/Open-Infra-Platform	boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	jschlenger
[REF] noexcept(false) in IfcGeometryConverter	tumcms/Open-Infra-Platform	boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	jschlenger
Consider merging "Usage" and "Scripts" into a single documentation entry	ivadomed/ivadomed	documentation	jcohenadad
Replace uses of tempname in CI by mktemp	JuliaLang/julia	ci hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	Keno
Contribute !	blackjax-devs/blackjax	bayesian-inference community hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Naming Convention for CI Tests	ECP-WarpX/WarpX	cleaning component-tests gpu hpsf laser particle-in-cell physics pic plasma research simulation	EZoni
glottomap: add option to show/hide NA	SietzeN/glottospace		SietzeN
missing keyword ELAPSED in SYSTIME()	gnudatalanguage/gdl	WIP antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
[Bug]: TwoSlopeNorm behaves like CenteredNorm	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-color/colorbar wx	MartenSkogh
NameError/AttributeError suggestions in Python 3.10 error messages	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	tirkarthi
Feature request: Accept a URL to an input file	kanaverse/kana	bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly	slowkow
Address fixtures that are not being used	tardis-sn/tardis	astrophysics python radiative-transfer science supernova testing-vertical_traffic_light	atharva-2001
Better introduction to parametric types in the manual	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific types-and-dispatch	adigitoleo
Add equivalent of cycle_basis that returns an edge list	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
[Tracker] Implement all `scipy.*` APIs in CuPy	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Add missing parameters to the `nan` functions	cupy/cupy	catnumpy-compat contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	takagi
Implement reordering function to assess feature significance?	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca	JohannesWiesner
Comment option for CSVTable	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgcsvviewer	barronh
Cylinder actor needs to use repeat_primitives by default	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement	skoudoro
transpose a databox	lanl/spiner	enhancement help-wanted	Yurlungur
Separate random proposals and the RMH acceptance step	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
New method to fetch data along a given trajectory	euroargodev/argopy	argo argo-data argo-floats argo-traj enhancement oceanography python stale	gmaze
recreate DEM comparison notebook	icesat2py/icepyx	closember community-driven hacktoberfest icesat-2 python3	JessicaS11
Implement IO support for OpenEXR Layout by Fichet et al. (2021).	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
`" >Allow packing by `{"advected"}` rather than using an explicit `std::vector`	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Cleanup HDF5 ifdef logic for restart interfaces	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Bug: changing axis spine colors	JuliaPlots/Makie.jl	Attributes Axis MakieLayout bug gpu graphics julia julia-language plotting visualization	bensetterholm
Hide Contextual Help	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkginspector	CptTrips
Getting starting cells for parcels implicitly assumes that inlet is located along x=0 coordinate	DeltaRCM/pyDeltaRCM	help-wanted	amoodie
Lift from single Observable	JuliaPlots/Makie.jl	Makie Observables enhancement gpu graphics julia julia-language plotting visualization	fbanning
Define additional notations in Docs	JulianKarlBauer/mechkit	continuum-mechanics documentation help-wanted mechanics mechanics-of-materials python	JulianKarlBauer
Missing SVs	tjiangHIT/cuteSV	oxford-nanopore pacbio-data structural-variation	bnoyvert
Plotting function should document parameters better	scverse/muon	anndata cite-seq enhancement mudata multi-omics multimodal-data multimodal-omics-analysis muon scanpy scatac-seq scrna-seq scverse	gtca
`mesh` fails on quadrilateral mesh	JuliaPlots/Makie.jl	Makie conversions enhancement gpu graphics julia julia-language mesh plotting visualization	BambOoxX
Particle Histogram 2D	ECP-WarpX/WarpX	component-diagnostics gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Add an extractor function for the dispersion parameter of estimated models	gavinsimpson/gratia	distributional-regression enhancement gam gamm generalized-additive-mixed-models generalized-additive-models ggplot2 glm lm mgcv penalized-spline r r-package random-effects smoothing splines	gavinsimpson
write deterministic resamplers and samplers	tbrown122387/pf	help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
Add a README in each examples folder	DLR-AMR/t8code	adaptive-mesh-refinement documentation enhancement examples high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation workloadhigh	holke
CSVY Parsers Should Be Incorporated to Model Readers	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	marxwillia
Compute UMAP from pre-existing distance matrix	scverse/scanpy	Area---Topology-🍩 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	ivirshup
[ENH]: FancyArrow in 3D	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-arrow topic-mplot3d wx	patquem
Add "completely symmetric" fourth-order tensors to notation.ExplicitConverter	JulianKarlBauer/mechkit	continuum-mechanics enhancement mechanics mechanics-of-materials python	JulianKarlBauer
better calling convention for large numbers of arguments	JuliaLang/julia	compilercodegen hacktoberfest hpc julia julia-language julialang latency machine-learning numerical programming-language science scientific	JeffBezanson
Export `DocumentSet` to bibtex	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
Export `DocumentSet` to RIS	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
Support WoS (Web of Science)	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
SBP coefficients of Albin & Klarmann (2016)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Type-checking of arguments in aggregation methods	IAMconsortium/pyam	analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	danielhuppmann
Output font size not changing for code cells	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils	wiraki
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found. (Ubuntu related?)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling unclear	3fon3fonov
[BUG-REPORT] Vaex `to_dask_array` fails `AttributeError: 'ValueError' object has no attribute 'numpy'`	vaexio/vaex	bigdata data-science dataframe hdf5 help-wanted machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	Ben-Epstein
add missing_only=True to all imputers to use in combination with variables=None	feature-engine/feature_engine	data-science easy enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn	solegalli
Move CSVY writer from custom abundance widget to io	tardis-sn/tardis	astrophysics io python radiative-transfer science supernova	Rodot-
make paths in "File browser" editable?	jupyterlab/jupyterlab	enhancement help-wanted jupyter jupyterlab pkgfilebrowser	mathause
Repl session uuid	JuliaLang/julia	REPL feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
(link to) Radis-App Issues & Features	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 💡gsoc 😎.	erwanp
(link to) Radis-Lab Issues & Features	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared performance plasma plasma-physics radiation spectra spectroscopy 💡gsoc 😎.	anandxkumar
Within cluster DE test	scverse/scvi-tools	P2 cite-seq deep-generative-model deep-learning differential-expression enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	zoesteier
More concise error message with feature name, not only feature_idx	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	fingoldo
AstropyDepreciationWarning	riogroup/SORA	documentation effort_low	GianmarcoBroilo
Warn user if Nboot > Npermutations	privong/pymccorrelation	bootstrapping-statistics correlation-coefficient enhancement monte-carlo	privong
Extracting asc/descending tracks in high latitudes (regions 4 and 11)	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	s2002365
conda-forge download statistics	icesat2py/icepyx	closember community-driven documentation hacktoberfest icesat-2 python3	JessicaS11
Enable Sky Projection for `plot_fit`	PetroFit/petrofit	Enhancement Good-First-Issue Visualization fitting galfit petrofit petrosian python sersic	robelgeda
Consistent treatment of `nan` in summary functions	zdelrosario/py_grama	enhancement uq	zdelrosario
Pascal, Hilbert and/or other special matrices in `jax.scipy.linalg`	google/jax	P3-(no-schedule) enhancement jax	pnkraemer
[Bug]: Large file size when using fill_between()	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tgrohens
docs: Improve examples install instructions	projectmesa/mesa	agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis help-wanted mesa modeling-agents simulation simulation-environment simulation-framework spatial-models	rht
MICADO Docs, show how to change Seeing with AnisoCADO PSF	AstarVienna/irdb	documentation help-wanted instrument-specific	AstarVienna
[Doc]: Arguments of FFMpegFileWriter not clear.	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-animation wx	baloe
Expand rustworkx-core testing	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	mtreinish
expand non_fitted_error_checks for methods get_feature_names_out and inverse transform	feature-engine/feature_engine	data-science enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn	solegalli
Doxygen documentation of default scheme is missing in parts.	DLR-AMR/t8code	adaptive-mesh-refinement documentation high-performance-computing hpc mesh modeling mpi next-release parallel parallel-computing simulation	holke
Reduce template parameters in `Swarm::AllocateBoundariesImpl_`	parthenon-hpc-lab/parthenon	C++17 amr high-performance-computing kokkos parthenon refactor	brryan
Add documentation on optimizing transfer performance	idaholab/moose	C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Add documentation for XDA/XDR format and/or link to existing documentation	idaholab/moose	C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Map remaining pymatgen/atomate sets and workflows	jacksund/simmate	enhancement	jacksund
Widgets code shows up during the commandline	tardis-sn/tardis	astrophysics bug-lady_beetle python radiative-transfer science supernova	wkerzendorf
option+letter on OSX with tkagg give non-alpha numeric rather than alt-	matplotlib/matplotlib	Difficulty-Medium GUI-MacOSX GUI-tk Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
`std::set` instead of `std::vector`?	parthenon-hpc-lab/parthenon	amr discussion high-performance-computing kokkos parthenon	Yurlungur
[FR] allow tuple of (lower, upper) for band	JuliaPlots/Makie.jl	Makie conversions gpu graphics julia julia-language plot plotting visualization	KronosTheLate
Add Yamazaki et al (2020) terrain-following interpolation algorithm	euroargodev/argopy	argo argo-data argo-floats argo-traj enhancement oceanography python stale	gmaze
[Tracker] Fix signature mismatch with NumPy/SciPy	cupy/cupy	catnumpy-compat contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Explicitly document the `missing` behavior for all functions that handle `missing` values	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	CameronBieganek
Limit max number of Simbad rows	snad-space/ztf-viewer	bug	hombit
Move more connected components functions to retworkx-core	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	enavarro51
Move tests to tests/ directory.	extendr/extendr	api-wrapper extension ffi-bindings r rust	andy-thomason
Favour explicit `extendr_api` calls to prelude.	extendr/extendr	api-wrapper extension ffi-bindings r rust	andy-thomason
Restructure Unit Tests	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Reduce Duplicate Code in Unit Tests	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Missing functions from DTLZ libraries	parmoo/parmoo	blackbox-optimization bug mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Consolidate `NullIndexer` classes	lanl/singularity-eos	enhancement	jhp-lanl
A GUI for creating MOOPs	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
[Feature Request] Force users to select a default output directory rather than creating a 'VesselVio' directory on the desktop	JacobBumgarner/VesselVio	analysis enhancement open-source visualization	ElisabethKugler
Handle 7- and 9-parameter Hipparcos fits	sblunt/orbitize	enhancement help-wanted long-term	sblunt
improve error message in `set_meta_from_data()`	IAMconsortium/pyam	analysis energy-systems enhancement help-wanted iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
Writing tutorials	pymedphys/pymedphys	dicom help-wanted medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy	SimonBiggs
Write a downloader function for data	tardis-sn/carsus	astronomy atomic-database feature python	epassaro
Set notated input parameters not being recognized	DeltaRCM/pyDeltaRCM	documentation help-wanted	Lvulis
Add alpha-DPI as a backend in orbitize	sblunt/orbitize	enhancement	sblunt
2022.04.0: sphinx warnings `reference target not found`	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	kloczek
NOCT_SAM may not handle effective irradiance correctly	pvlib/pvlib-python	bug help-wanted photovoltaic python renewable-energy renewables solar-energy	adriesse
Add named Cells	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Create general tests for all EOS	lanl/singularity-eos	Testing	jhp-lanl
Update relevant tests to use `sort_results` argument	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy tests	pavithraes
Sanitize EOS parameters	lanl/singularity-eos	enhancement	jhp-lanl
+ v basic robis example vignette	marinebon/obisindicators	biodiversity enhancement help-wanted marine marine-biology r	7yl4r
Granular device management for Jax	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning enhancement human-cell-atlas jax scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	justjhong
Implement multipathfinder	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo probabilistic-programming sampler sampling-methods	junpenglao
Create Objects from Scratch (without existing problem)	idaholab/MontePy	api feature-request mccafe-☕ mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Easily delete Objects	idaholab/MontePy	api feature-request mccafe-☕ mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
STY: usage of itertools	pysat/pysat	cubesat electric-fields ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science style thermosphere	jklenzing
For all Windows users, who use the "Windows Subsystem for Linux" (WSL), please read!!!	3fon3fonov/exostriker	exoplanet exoplanets multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	3fon3fonov
poisson_conf_interval 'kraft-burrows-nousek' fails unexpectedly	astropy/astropy	Bug Effort-low Package-novice astronomy astrophysics astropy python science stats	hamogu
Discuss `xlims!`, `ylims!`, and `limits!` in the Basic Tutorial?	JuliaPlots/Makie.jl	Axis Axis3 documentation gpu graphics julia julia-language plotting visualization	CameronBieganek
Standardize reporting known inconsistencies in `dask.dataframe` API	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	avriiil
♻️ Refactor functions to avoid the generateDensityMatrix flag	munich-quantum-toolkit/core	DD enhancement mqt quantum-computing quantum-intermediate-representation tum	33Gjl1Xe
Expand test coverage	openmopac/mopac	electronic-structure help-wanted molecular-orbital-theory quantum-chemistry semiempirical-methods	godotalgorithm
Use Artifact system to ship test .root files	JuliaHEP/UnROOT.jl	cern-root hacktober help-wanted hep high-energy-physics julia particle-physics	Moelf
Inconsistent rounding for parameters in savename	JuliaDynamics/DrWatson.jl	bug hacktoberfest project-assistant project-management science science-research setup-tool simulations	cumberworth
Add a pretty printer that returns information that is useful for the user	blackjax-devs/blackjax	bayesian-inference documentation enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Improve the documentation	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Refactor marginal_latent_gaussian.py so it is PyTree compatible	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo important probabilistic-programming refactoring sampling-methods	rlouf
Implement the use of function annotations	idaholab/MontePy	api code-improvement mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
User-defined random number generator	jmejia8/Metaheuristics.jl	constrained-optimization decision-making differential-evolution enhancement hypervolume multi-objective-optimization nsga2 optimization pso simulated-annealing	mohamed82008
inconsistency in FBA flavour invocations	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology	lptolik
ENH: sparse matrix assigning should be optimized rather than using densified matrixes	scipy/scipy	algorithms closember enhancement python scientific-computing scipy scipy.sparse	likaiwen123
Add support for Atom Indices Import	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Suspend OGLE-III	snad-space/ztf-viewer	enhancement	pruzhinskaya
Fix PDBList access to servers other than RCSB	biopython/biopython	Bug bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Extend PDBList obsolete handling to mmCIF and mmtf formats as well as assemblies	biopython/biopython	Bug Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Update argument handling in PDBList.py, possibly by creating a new module.	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Access to Alphafold database of 3D modules in a PDBList-like interface	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Add example with non-ascii characters to demonstracte Unicode support	quantling/pyndl	documentation enhancement	derNarr
Implement remaining numpy functions	zdelrosario/py_grama	uq	zdelrosario
Utility to change model title	zdelrosario/py_grama	enhancement uq	zdelrosario
Polymer Builder issue	mosdef-hub/mbuild	low-priority mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	CalCraven
Energy Minimize	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	CalCraven
How to pass compression level to_parquet, to_zarr [docs]	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	ncclementi
ValueErrors that should be TypeErrors	zdelrosario/py_grama	invalid uq	mstites
Add more viz plot types	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization viz	HyrumDickinson
Filter for un-mutated bases	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	emmahodcroft
Add final extraction directory size and total file count to reports	SMI/SmiServices	priority/high	rkm
Handle MTPASA DUID Availability	UNSW-CEEM/NEMSEER	aemo australia energy enhancement forecast national-electricity-market nem nemweb pasa pre-dispatch python	prakaa
Dialog hangs if IBodyWidget.getValue() throws an error	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils tagExtensions	herjiict
Root finding bounds in Davis EOS	lanl/singularity-eos	enhancement	Yurlungur
Slow calculation time for IfcSine and IfcCosine	tumcms/Open-Infra-Platform	IFC boost building-information-modelling evaluation example-files ifc infrastructure okstra point-cloud quality_of_life	Elvira2227
Missing documentation / docstrings	zdelrosario/py_grama	enhancement uq	mstites
Code duplication within eval functionality & unittests	zdelrosario/py_grama	uq	mstites
Global Enhancements List	Jashcraf/poke	enhancement	Jashcraf
Create Useful filters of objects by properties	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
README budges.	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	mosheraboh
how to specify db-load-mode in precomputed_alignments_mmseqs.py	aqlaboratory/openfold	alphafold2 protein-structure pytorch	lzhangUT
Create fully pinned requirements file for bug-fix branches	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
Outlier filter for live plots	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Performance best practices docs page	parthenon-hpc-lab/parthenon	amr documentation help-wanted high-performance-computing kokkos parthenon	Yurlungur
Add support for transformed surface nums	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Avoid logger info in CCDData.read when unit specifies matches that in FITS file	astropy/astropy	Feature-Request astronomy astrophysics astropy nddata python science	astrofrog
Replace custom deepdiff wrapper scripts with deepdiff CLI	nextstrain/augur	easy-problem enhancement	huddlej
Open/limit FileDialog.getExistingDirectory from a subdir of root	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgfilebrowser	suganya-sk
Bio.PDB.PSEA should use a temporary directory to run the third-party tool	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
report sketch progress from `sketch fromfile`	sourmash-bio/sourmash	bioinformatics enhancement fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	bluegenes
pgstar Controls	MESAHub/mesa	astronomy astrophysics binary-evolution enhancement fortran stellar-astrophysics stellar-evolution	ericasaw
Drop the name of returning, only keep type for single returning method	siavash-saki/tesspy	documentation	Zeroto521
reduce the size of photosphere in the RPacketPlotter Plot	tardis-sn/tardis	astrophysics python radiative-transfer science supernova visualization	jayantbhakar
Editable pip install is not working correctly	multiscale/muscle3	documentation	maarten-ic
Is there a good way to issue a warning from a task?	dask/dask	dask enhancement numpy pandas pydata python scikit-learn scipy	ian-r-rose
Testing for Windows	UNSW-CEEM/NEMSEER	aemo australia energy forecast national-electricity-market nem nemweb pasa pre-dispatch python test	prakaa
Mismatch between documentation and REST API	containers/podman	Good-First-Issue HTTP-API containers docker documentation kind/bug kubernetes linux oci	benoitf
show users how to delete drives	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	jasmainak
Print Source Label in Segmentation Plot	PetroFit/petrofit	Enhancement Good-First-Issue fitting galfit petrofit petrosian python sersic	robelgeda
Cell type proportion per spot overrepresenting transcriptionally active cell types?	BayraktarLab/cell2location	question	mgrantpeters
Add new metric - example + doc	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	mosheraboh
Add an interactive event viewer	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	RasmusOrsoe
Auto-Update setup.py's release version upon github release	ianfhunter/GNOLL	Feature-Request Python board-game c code-quality cpp dice dice-notation dice-roller dice-rolls go golang haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Allow tables to correct hull energies	jacksund/simmate	enhancement	mctaggartdh
Thread for possible enhancements in future	TORCH-Consortium/MAGMA	enhancement genomics help-wanted mycobacterium-tuberculosis nextflow nextflow-pipeline pipeline tuberculosis wish-list	abhi18av
Add option to profile code modules and examples	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	MortenHolmRep
Add a test for parametric msh file import	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation workloadmedium	sandro-elsweijer
Test: d4!!	ianfhunter/GNOLL	Python Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Test: Symbolic Arithmetic	ianfhunter/GNOLL	Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
ARIA labels on main area widget are incorrect (always referring to a notebook)	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils tagAccessibility	krassowski
[ENH]: support PySide6's `snake_case`	matplotlib/matplotlib	Difficulty-Medium GUI-Qt Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	bersbersbers
Improve the ecological analysis method	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	mzy2240
Add CLI entrypoint that mimics the C++ app	parafields/parafields	enhancement hacktoberfest iwr-hacktoberfest	dokempf
Geometry.from_dxf can only ever import one shape	robbievanleeuwen/section-properties	computational-mechanics cross-section enhancement finite-element-analysis finite-element-method help-wanted python stress-analysis structural-engineering	mfeif
Add "How to distribute gradient computation?" document	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Add "How to run adaptation for several chains?" document	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Publish the doc for each PR individually	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
RFE: Add tracking/monitoring/events of what will/is currently performed by `kube play` command	containers/podman	Good-First-Issue containers docker kind/feature kube kubernetes linux oci podman-desktop	benoitf
`cupyx.scipy.sparse.block_diag` working with cupy sparse matrix on GPU	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	tagerjump
MCNP supports negative particles (because of course)	idaholab/MontePy	api bugs feature-request low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Sparse Eigensolver issue.	qutip/qutip	BUG medium python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Ericgig
Add weights for the pearson, spearman, and r2_score	PyTorchLightning/metrics	analyses data-science deep-learning enhancement machine-learning metrics python pytorch wontfix	DomInvivo
Power/Exponent	ianfhunter/GNOLL	Feature-Request board-game c core cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Labels for PatchCollection do not show	matplotlib/matplotlib	Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-collections-and-mappables topic-legend wx	Robotatron
Duplicate and non-existing Doxygen groups	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Make the `itkMultiLabelSTAPLEImageFilterTest` quantitative	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting	jhlegarreta
Save scientific work citations to a BibTeX file for ease of use in Doxygen	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Add validation of profile UUID to the `Profile` class and `verdi setup`	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/config topic/verdi type/enhancement workflow workflow-engine workflows	sphuber
Auto-Detect when changing params in `dataset_balanced_division_to_folds(reset_split=False)`	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	SagiPolaczek
[FR] allow orthogonal parameters in pyro.param	pyro-ppl/pyro	bayesian bayesian-inference deep-learning discussion enhancement low-priority machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	martinjankowiak
list available EdgeStats in docs	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
[ENH]: Add default kwargs values if figure.suptitle(t, **kwargs) to rcParams and inherit from there.	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-rcparams topic-ticks-axis-labels wx	frank-klein-schaarsberg-wb
create documentation project on Read the Docs	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning documentation enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	SagiPolaczek
Remove support for "installing" Parthenon as a library	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon refactor	pgrete
Add a "How to use forward-mode differentiation instead of backward-mode differentiation" tutorial	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Replace profile.create_profile with verde.profile_coordinates	mdtanker/polartoolkit	antarctica arctic bedmachine bedmap cryosphere enhancement gmt greenland jupyter-notebook plotting polar profiles pygmt python	mdtanker
DOCS: make example project CamelCase instead of it having space in its name	JuliaDynamics/DrWatson.jl	documentation hacktoberfest project-assistant project-management science science-research setup-tool simulations	math4mad
expand KF filtering test to compare to explicit MVN	probml/dynamax	hidden-markov-models jax kalman-filter python state-space-models	murphyk
HyMD profiling	Cascella-Group-UiO/HyMD	chemistry coarse-grained hybrid-particle-field molecular-dynamics optimization physics	hmcezar
Transitive closure	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	LaurentBergeron
Adding UNO cards	ianfhunter/GNOLL	Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	CodeWAdi
Implement multinomial HMC	blackjax-devs/blackjax	bayesian-inference hamiltonian-monte-carlo help-wanted important mcmc probabilistic-programming sampler sampling-methods	rlouf
Add (Kernelized) Stein discrepancy diagnostic	blackjax-devs/blackjax	bayesian-inference diagnostics enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Add Macros from various games	ianfhunter/GNOLL	Low/No-Code Macro-Request Multiple-Assignees board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Simplify `minimize_lbfgs` and `pathfinder_adaptation`	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	junpenglao
Uninformative error message if connection to manager fails	multiscale/muscle3		LourensVeen
Information for new contributors	pandas-dev/pandas	alignment data-analysis data-science flexible pandas python	noatamir
Enable evaluation of multiple inputs at once on a single polynomial	MrMinimal64/multivar_horner	enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	KPJoshi
in pro RESOLVE_ROUTINE, new keyword SKIP_EXISTING is missing	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
More gates	CQCL/qujax	enhancement jax python quantum	SamDuffield
Documentation at docs.einsteinpy.org needs updates	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
prolongation does not preserve min/max values	parthenon-hpc-lab/parthenon	amr bug help-wanted high-performance-computing kokkos parthenon	BenWibking
Allow `dict_list` to return other types than dictionaries	JuliaDynamics/DrWatson.jl	enhancement hacktoberfest project-assistant project-management running-listing science science-research setup-tool simulations	Datseris
improve pjit pytree error involving Nones (and PytreeLeafs)	google/jax	better_errors jax	mattjj
Add Macro: Fate of the Norns - Runes	ianfhunter/GNOLL	Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Geodesic Plotting improvements	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion plotting space-physics	JeS24
Python version not working on Windows	multiscale/muscle3		LourensVeen
Provide option to move the legend and logo	jgieseler/solarmach	enhancement esa heliophysics space-physics spacephysics spaceweather	jgieseler
[Bug]: Cannot use empty markers in scatter	matplotlib/matplotlib	API-consistency Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	Atcold
Components, kernels and compute elements	multiscale/muscle3		LourensVeen
BUG: freqz does not work on multi-dimensional array, despite what documentation claims	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.signal	sliedes
Adding some basic VI approximation and fitting routine	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted important probabilistic-programming sampling-methods vi	junpenglao
Add new example Jupyter notebooks / edit old ones	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
help,/files does not show open files	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Move interface code out of `eos` folder	lanl/singularity-eos	clean-up	jhp-lanl
Degree to radian	pyomeca/biorbd		Ipuch
Negative weights for KDE	lzkelley/kalepy	enhancement kde kernel-density-estimation pdfs python python3 resample resampling statistical-analysis statistics	Pablobala
`podman manifest create` should support `--format`	containers/podman	Good-First-Issue containers docker kind/feature kubernetes linux oci	jlebon
Add confirmation email and other fields to form	hpc-social/map	community high-performance-computing hpc map	alansill
Clarify docstring for `image`	JuliaPlots/Makie.jl	Makie documentation gpu graphics heatmap-&-image julia julia-language plotting visualization	fatteneder
z as die symbol does not work with percentile dice	ianfhunter/GNOLL	board-game bug c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Setup SonarCloud for C	ianfhunter/GNOLL	C C++ Feature-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Readme Badges should link to documentation for that language	ianfhunter/GNOLL	Low/No-Code board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Dates round/floor/ceil arguments switched	JuliaLang/julia	dates hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
[ENH]: "Road sign" boxstyle/annotation	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-annotation wx	oscargus
Helper functions for arithmetic on MSDS	colour-science/colour	Discussion Feature Good-First-Issue color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	tjdcs
BUG: Wrong (?) documentation in geopandas.sindex.SpatialIndex.query	geopandas/geopandas	bug documentation geoparquet geospatial pandas python spatial	tqa236
`eachindex` should throw `DimensionMismatch` for differently sized tuples	JuliaLang/julia	bug correctness-bug-⚠ hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	cafaxo
Remove or Implement VTK Outputs	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon	forrestglines
Supporting custom naming in `compute.quantiles()`	IAMconsortium/pyam	analysis energy-systems enhancement iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
support more flexible `weights` arguments in `compute.quantiles()`	IAMconsortium/pyam	analysis energy-systems enhancement iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
target completeness should be cached	dsavransky/EXOSIMS		dsavransky
Check that `ParameterInput` is the same on every rank	parthenon-hpc-lab/parthenon	amr bug help-wanted high-performance-computing kokkos parthenon	Yurlungur
Integrate non-holonomic DMPs	dfki-ric/movement_primitives	enhancement help-wanted python robotics	AlexanderFabisch
CLN: Use dedup_names in all instances where duplicate column names are renamed	pandas-dev/pandas	Clean IO-HTML alignment data-analysis data-science flexible pandas python	datapythonista
Add a screenshot for visually showing where the areas of the shell are located	jupyterlab/jupyterlab	documentation jupyter jupyterlab	jtpio
Add prose linter to CI	projectmesa/mesa	agent-based-modeling agent-based-simulation complex-systems complexity-analysis easy-task!!! gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models	rht
[Benchmark] Speed comparison with Matlab & R	lrnv/Copulas.jl	copula documentation julia	yanyu2015
Implement new models	renecotyfanboy/jaxspec	help-wanted jax model	renecotyfanboy
Check initialization values in tests	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting	jhlegarreta
Extreme value statistics	nansencenter/DAPPER	bayesian-filter bayesian-methods chaos data-assimilation enhancement enkf kalman kalman-filtering particle-filter state-estimation	patnr
Testing Master Plan	trixi-framework/TrixiParticles.jl	julia multiphysics simulation smoothed-particle-hydrodynamics testing	efaulhaber
Integrate ProDMPs	dfki-ric/movement_primitives	enhancement help-wanted python robotics	AlexanderFabisch
Multidimensional version of `RandomShuffle` and `BlockShuffle`.	JuliaDynamics/TimeseriesSurrogates.jl	enhancement hacktoberfest hypothesis-testing julia method-request nonlinear-time-series surrogate surrogates timeseries	kahaaga
Allow more than one structure viewer in structure-only mode	cosmo-epfl/chemiscope	component-jupyter component-structure hacktoberfest materials-science molecule visualization web	Luthaf
[MNT]: Specify ordering in file in gallery folder	matplotlib/matplotlib	Difficulty-Medium Documentation-build Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	story645
Rename coupled() routine to avoid confusion	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
descrip() has extra spaces	statdivlab/rigr	low-priority	adw96
GLMakie: Specifying monitor not functional	JuliaPlots/Makie.jl	GLMakie bug gpu graphics julia julia-language plotting visualization	Arch-Storm
Documentation overhaul	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
Add a `current` symlink to the current run directory when launching a simulation	multiscale/muscle3	enhancement	maarten-ic
no order argument in neighbors()	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	maximelucas
Add cosmology tests	Ciela-Institute/caustics	docs gravitational-lensing pytorch	adam-coogan
Add typing hints to all methods	Autostronomy/AstroPhot	astronomy docs python pytorch science-research scientific-computing	ConnorStoneAstro
Add typing hints to all methods	ConnorStoneAstro/AutoProf	astronomy docs python pytorch science-research scientific-computing	ConnorStoneAstro
A BFS layers algorithm	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	LaurentBergeron
Report orphaned objects	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Convert docstrings to google format	Autostronomy/AstroPhot	astronomy docs python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Convert docstrings to google format	ConnorStoneAstro/AutoProf	astronomy docs python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Clean up module imports	Autostronomy/AstroPhot	astronomy python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Clean up module imports	ConnorStoneAstro/AutoProf	astronomy python pytorch refactor science-research scientific-computing	ConnorStoneAstro
lax.conv_transpose has different convention than TF, document it and make switching easy?	google/jax	documentation enhancement jax	mattjj
Make ymmsl documentation easier to find	multiscale/muscle3		maarten-ic
Make output mesh CLI argument in `precice-aste-run` optional	precice/aste		davidscn
Enable diff mode between data sets	precice/aste		davidscn
PERL5LIB missing when activating environment with Perl packages	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager perl python radiuss scientific-computing spack windows	marcodelapierre
Node positions for drawing could have an improved data structure	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
CI: add test for GCC 13.x and GCC trunk	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
Follow-up from "Resolve "AxisPlane.validate() rejects valid value of zero"": Enforce Surface numbers on validate.	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Common-sense validation for all surface coefficients for all surface types. Good intern task.	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
DOC: Simplify pandas theme footer	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
[Bucket] Support more loaders	automl/amltk	feature	eddiebergman
Migrate tbump.toml to pyproject.toml	scikit-hep/pyhf	asymptotic-formulas chore closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy packaging python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Unit tests for Utils	Autostronomy/AstroPhot	astronomy python pytorch science-research scientific-computing test	ConnorStoneAstro
Unit tests for Utils	ConnorStoneAstro/AutoProf	astronomy python pytorch science-research scientific-computing test	ConnorStoneAstro
Allow micro simulations to pass data to be used only in the adaptivity calculation	precice/micro-manager	coupling help-wanted macro-micro multiphysics multiscale research-and-development	IshaanDesai
Produce more detailed MeshGenerator errors	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	loganharbour
Broken documentation links on Gensim's PyPI page	RaRe-Technologies/gensim	bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	piskvorky
Allow selection and picking of surfaces with triangle strips	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation	Garyfallidis
ENH: expose `greedy` colouring from mapclassify	geopandas/geopandas	enhancement geoparquet geospatial pandas plotting python spatial	martinfleis
Restart from latest checkpoint	ECP-WarpX/WarpX	component-checkpoint/restart enhancement gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	sheroytata
Streamline CI workflow	Qiskit/qiskit-experiments	qiskit	coruscating
Distribution API seems missing	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci	lnnwvr
New optimized variable-coefficient second-derivative operators of Stierström, Almquist, Mattsson	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Feature Types From Loaded Model	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees documentation feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	DanRamage
Create a non-root default user with id 1000	scikit-hep/pyhf	Docker asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax needs-triage numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
BUG: Incorrect error message in LinearOperator.rmatmul	scipy/scipy	algorithms closember defect python scientific-computing scipy scipy.sparse.linalg	akhmerov
Support different audio / directory structures	CouncilDataProject/speakerbox	audio-classification enhancement speaker-id speaker-identification transformers	evamaxfield
attributes path causing confusion in write_matsim function	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
" in returned Id attribute ( /v1.24/images/${img}/history )" >REST API: "\u003cmissing\u003e" instead of "" in returned Id attribute ( /v1.24/images/${img}/history )	containers/podman	Good-First-Issue bugweek containers docker kind/bug kubernetes linux oci	eriksjolund
Test __str__ and __repr__ printing of user-facing objects	idaholab/MontePy	CI/CD api bugs mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Consistent naming of generators	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
[Tests] Test all qubit templates	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Replace print statements by warnings or stderr in NCBIXML	biopython/biopython	bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Potential bug could occur in deletion of files in test harness	idaholab/moose	C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Add Apriori algorithm also for better comparison	firefly-cpp/NiaARM	association-rule-mining association-rules data-mining data-science enhancement evolutionary-algorithms help-wanted swarm-intelligence	minakshikaushik
update ICESat-2 resource guide	icesat2py/icepyx	closember community-driven documentation hacktoberfest icesat-2 python3	JessicaS11
MooseDocs media extension doesn't throw an error if there is a syntax issue in an option	idaholab/moose	C-Documentation Good-first-issue P-normal T-defect amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	cticenhour
Non-interactive toggle of Toggle?	JuliaPlots/Makie.jl	Makie Widgets enhancement gpu graphics julia julia-language plotting visualization	moyner
compare_by plotter: filenames too long for large symbols	JPenuchot/ctbench	benchmark clang compilation data-analysis data-visualization gcc metaprogramming	JPenuchot
Add reverse direction serialization	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
remaining autodiff functors	roualdes/bridgestan	c cpp enhancement julia python r stan	bob-carpenter
Convert all indexing variables to `size_t`/`ptrdiff_t`	cholla-hydro/cholla	code-cleanup enhancement refactor	bcaddy
Add a CI test to ensure that docs are building	maps-as-data/MapReader	article computer-vision deep-learning digital-humanities enhancement hut23 hut23-96 machine-learning maps new-feature pytorch spatial-data	andrewphilipsmith
Suggestions for documentation and features	biaslab/RxInfer.jl	bayesian-inference documentation enhancement inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference	John-Boik
Consider removing <4 gene limit	NathanSkene/EWCE	benchmarking deconvolution enhancement single-cell single-cell-rna-seq transcriptomics	bschilder
New optimized second-derivative operators of Eriksson and Mattsson (2022)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
[Analysis] Analyze differences in outputs generated with LSA method and solved with linalg.solve	DataverseLabs/pyinterpolate	Good-First-Issue concept help-needed kriging machine-learning math-and-logic poisson-kriging python semivariogram spatial-analysis spatial-interpolation	SimonMolinsky
Support local volumes with a lifetime longer than that of the podman host	containers/podman	Good-First-Issue containers docker kubernetes linux oci	samuel-f
DOC: Fix docs for various offset constructors	pandas-dev/pandas	Docs Frequency alignment data-analysis data-science flexible pandas python	Dr-Irv
Matplotlib updatable plot slowing down data acquisition	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response	samirmartins
Add full support for CDF	gnudatalanguage/gdl	antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
[Request] Dates.unix2datetime with local time option	JuliaLang/julia	dates hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	kescobo
`update_ghost` performance	hpc-maths/samurai	adaptive-mesh-refinement amr cartesian scientific-computing	gouarin
outlet grid cells don't report channel outflow	IMMM-SFA/mosartwmpy	enhancement	thurber
Address deprecated features in Pandas 2.0	uclchem/SpectralRadex	astronomy astrophysics python radex radiative-transfer	GijsVermarien
DOC: docstrings in robust.norms, improve, reorganize	statsmodels/statsmodels	comp-docs comp-robust count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	josef-pkt
High level schematic overview of Makie's elements/structure	JuliaPlots/Makie.jl	documentation gpu graphics julia julia-language plotting visualization	fbanning
Inconsistent naming conventions of class member variables / C++ standards violations	lanl/singularity-eos	clean-up help-wanted	chadmeyer
Showing strings compactifies too aggressively	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific strings	KristofferC
heatmap visibility in volumeslices can't be toggled independently	JuliaPlots/Makie.jl	Attributes Makie gpu graphics julia julia-language plot plotting visualization	tomchor
Add type stability tests	JuliaHEP/UnROOT.jl	cern-root hacktober help-wanted hep high-energy-physics julia particle-physics	tamasgal
Update publishing notebook example dataset	MLMI2-CSSI/foundry	chemistry data-science datasets documentation-and-examples machine-learning materials-science	ascourtas
Unspecified feature name when getting most of errors caused by data	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	AndreyGurevich
Add description field to events page	hpc-social/events		vsoch
Add to calendar button / download link to ical	hpc-social/events		vsoch
How to get or create plot tree structure in R?	catboost/catboost	R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	viniCerutti
gallery disappears when switching between results and parameter sections	kanaverse/kana	bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly	jkanche
Missing optimized vector container for `Raw` type	extendr/extendr	api-wrapper enhancement extension ffi-bindings r rust	Ilia-Kosenkov
The input (stdin) styling does not match that of JupyterLab	jupyterlab/jupyterlab	bug jupyter jupyterlab tagCSS	SylvainCorlay
Improve version tracking and deprecate SVN support	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Classical in-situ radiation computation	ECP-WarpX/WarpX	component-diagnostics gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	berceanu
Remove astro-colibri from Summary	snad-space/ztf-viewer		pruzhinskaya
optimized convenance methods for conversion between SIMDe public types of the same size	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
Ensure compliance with more Ruff rules	astropy/astropy	Feature-Request Package-novice Refactoring astronomy astrophysics astropy dev-automation python science	eerovaher
`Booster.save_model(format="pmml")` is highly inefficient in size.	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	UriyaHarpeness
catboost is unable to calculate shap values when set_scale_and_bias is used	catboost/catboost	big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning model-analysis python r tutorial	antipisa
Register LaTeX reader for Cosmology	astropy/astropy	Feature-Request astronomy astrophysics astropy cosmology python science	nstarman
Granular `@fastmath` flags	JuliaLang/julia	feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	mikmoore
Current algorithms planned for implementation	Pometry/Raphtory	Algorithms Enhancement Good-first-issue Meta analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Network generation models planned for implementation	Pometry/Raphtory	Good-first-issue Network-Generation Rust-Core analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Document the graph generation module	Pometry/Raphtory	Documentation Good-first-issue Network-Generation analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Add feature to automatically set reference energy for Davis Products EOS	lanl/singularity-eos	enhancement	jhp-lanl
[ENH]: subfigure_mosaic	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk wx	anntzer
Make recursive parameter const in t8_forest_set_adapt()	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow shouldn't-take-long simulation workloadlow	Davknapp
Maybe measure convergence in the power-serie in `katz_centrality`	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	acombretrenouard
[feature] complete materials.py	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
`@. vec = vec +1` gives unhelpful error	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	LilithHafner
compiler find: `clang` compilers don't look for `flang-new` on Fedora	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager python radiuss scientific-computing spack windows	iamashwin99
Alternative method of particle initialisation from a file	ECP-WarpX/WarpX	component-core component-openPMD gpu hpsf laser particle-in-cell physics pic plasma research simulation	PhysicsDan
Improve label placement in output plots	lucydot/effmass		lucydot
Support loading aux string directly	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis help-wanted hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	mzy2240
2intersect: implement AVX512F optimizations proposed by Guille Díez-Cañas arXiv:2112.06342 [cs.DS]	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
promote logger and writer mock objects from pathfinder utils	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup feature stan testing	bob-carpenter
[Bug]: alpha array-type not working with RGB image in imshow()	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt status-confirmed-bug tk topic-color/alpha topic-images wx	patquem
INSTALL: `mpirun` not symlinked by `firedrake-install`	firedrakeproject/firedrake	installation	JDBetteridge
New method to interpolate dataset on theta surface	euroargodev/argopy	argo argo-data argo-floats enhancement help-wanted oceanography python stale	gmaze
[Doc]: dynamically resize the mathtext symbol tables	matplotlib/matplotlib	Documentation Good-first-issue Maintenance data-science data-visualization gtk matplotlib plotting python qt tk topic-text/mathtext wx	story645
ExtrudedMesh does not inherit `_base_mesh` if made from modified coordinates	firedrakeproject/firedrake	bug	ksagiyam
JSON export incompletely specifies categorical splits of non-symmetric trees	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	BenModulusLabs
Split descriptions are of insufficient precision	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	BenModulusLabs
In PTM search assigned unimod id dosen't match real unimod id	smith-chem-wisc/MetaMorpheus	Bug calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	Nate4499
Reject starting with multiple threads if `--handle-signals=no`	JuliaLang/julia	docs error-messages hacktoberfest hpc julia julia-language julialang machine-learning multithreading numerical programming-language science scientific	vchuravy
Add position vs time plot to Hamiltonian pendulum	deepskies/DeepBench	benchmark enhancement low-priority simulation	omaripaul57
Remove/reduce large example data: examples/data/example_data/lsoas	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
Menu dropdown is not always on top in click event order	JuliaPlots/Makie.jl	Widgets bug gpu graphics interaction julia julia-language planning plotting visualization	rafaqz
Plot multiple models onto fit lightcurve	nuclear-multimessenger-astronomy/nmma	enhancement	tylerbarna
`allunique(::String)` performance anomaly	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific strings	chrstphrbrns
`dask.array.linalg.qr` does not conform to the Array API spec	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	ogrisel
`dask.array.linalg.svd` does not conform to the Array API spec	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	ogrisel
Remove duplicated points from vtkfile when using vtkAPI	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation workloadhigh	Davknapp
Add hover text to tables	fitbenchmarking/fitbenchmarking	Enhancement Good-first-issue	tyronerees
VSCode debugging recipe (python)	multiscale/muscle3	documentation	AreWeDreaming
Parametrize t8_gtest_mat.cxx	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation tests workloadmedium	Davknapp
Add reference magnitudes to downloadable CSV files	snad-space/ztf-viewer		hombit
[Bug]: macOS backend run by non-logged-in user crashes in Ventura	matplotlib/matplotlib	Difficulty-Medium GUI-MacOSX Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tjni
DOC: Improve clarity of documentation for scipy.sparse.dia_array/dia_matrix	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.sparse	lciti
Document that describe is using approximate algorithms	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	fjetter
Fix bulk modulus formula in API documentation	lanl/singularity-eos	documentation	jhp-lanl
Bug report: Slit size depends on the wave range that it is applied on	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy	saradelahaie
New first- and second-derivative coefficients of Sharan, Brady, Livescu (2022)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Minimal working code example in experiment API docs	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Doc: Generate a comparison table for matrix class methods	cupy/cupy	catdocument contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Document best use cases versus alternatives	kblin/ncbi-acc-download	help-wanted	peterjc
Python Grid class should have __str__()	multiscale/muscle3		LourensVeen
Better typing and checks for index header	mad-lab-fau/tpcp	algorithms biosignals data-management data-science machine-learning python	AKuederle
Remove References to Garnett in Package-wide Documentation	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis documentation essential molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task	tommy-waltmann
Update host_callback used in blackjax	blackjax-devs/blackjax	bayesian-inference hamiltonian-monte-carlo probabilistic-programming sampling-methods	junpenglao
Allow to set spine stroke style	JuliaPlots/Makie.jl	Axis Makie enhancement gpu graphics julia julia-language plotting visualization	lassepe
No documentation for Julia 1.10-beta	JuliaLang/julia	docs docsystem hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	eschnett
Add job splitting information to the experiment class	Qiskit/qiskit-experiments	enhancement qiskit	coruscating
Add CI to check test coverage	precice/micro-manager	coupling help-wanted macro-micro multiphysics multiscale research-and-development	IshaanDesai
Add some tests with rationals	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
generalize our `BigFloat(::Float64)` method to more integer and floatingpoint types.	JuliaLang/julia	bignums hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific	oscardssmith
Move Carsus Notation to "Getting Started"	tardis-sn/carsus	astronomy atomic-database bug documentation python	atharva-2001
Feature Request: Reset Settings Button	SatelliteShorelines/CoastSeg	Optional V2 colab earth-engine enhancement jupyter landsat python	2320sharon
Implement CCA-classes that can account for sample groups	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca	JohannesWiesner
Review maximum cardinality search algorithm in `complete_to_chordal_graph`	networkx/networkx	Good-First-Issue Question complex-networks graph-algorithms graph-analysis graph-generation graph-theory graph-visualization python	richardrl
Implementing tension statistics	williamjameshandley/anesthetic	bayesian-inference enhancement fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy	DilyOng
Check package deployed on PyPI via CI	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
Use DocumenterCitations.jl	JuliaDynamics/TimeseriesSurrogates.jl	documentation hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries	kahaaga
JupyterViz: Add tests	projectmesa/mesa	Sprints! agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models	rht
Expand discriminator documentation	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Implement string representation (`__repr__`) in sparse matrix classes	cupy/cupy	catenhancement contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
In to_vertex_df the vertex id should be the index	Pometry/Raphtory	Enhancement Good-first-issue Python analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Include aligned sequences and translations in ndjson	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	chaoran-chen
Write a proper geometry tutorial	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation workloadhigh	sandro-elsweijer
Using PYDAQ requires the NIDAQmx driver.	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response	samirmartins
`ParameterInput` is kind of delicate	parthenon-hpc-lab/parthenon	amr help-wanted high-performance-computing kokkos parthenon	bprather
Mermaid Usage Instructions Missing	jupyterlab/jupyterlab	bug documentation jupyter jupyterlab	startakovsky
Replace print with proper logging	ECSHackWeek/impedance.py	battery corrosion electrochemistry fuel-cell impedance lithium-ion	ma-sadeghi
`arrows(points, directions; kwargs...)` doesn't work (CairoMakie backend)	JuliaPlots/Makie.jl	Makie arrows bug conversions gpu graphics julia julia-language plotting visualization	aafsar
Save-As should use a head request (it does not need the body) and get should catch non-existing.	jupyterlab/jupyterlab	enhancement jupyter jupyterlab statusBlocked tagPerformance	Carreau
add percentages to MongoExtractJobStore log output	SMI/SmiServices	priority/low	rkm
Use latest release of GMSO; add GAFF to tests	cmelab/flowerMD	hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
Example testing suite	DLR-AMR/t8code	CI adaptive-mesh-refinement examples high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation tests workloadhigh	sandro-elsweijer
Output block / boundary restriction groups	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Parallel computation on a cluster	WilliamLwj/PyXAB	algorithm automl bandit-algorithms blackbox-optimization continuous-armed-bandit data-science hyperparameter-optimization hyperparameter-tuning lipschitz-bandit machine-learning machine-learning-algorithms online-learning optimization optimization-algorithms reinforcement-learning x-armed-bandit	talmiller2
Refactor `parse`	extendr/extendr	api-wrapper extension ffi-bindings r rust	CGMossa
Streamline the `coordinates` module	einsteinpy/einsteinpy	coordinates general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
Provide a micro simulation abstract class which users can inherit/create a subclass	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
⚡ Better performance in Qiskit import	munich-quantum-toolkit/core	Core enhancement mqt python quantum-computing quantum-intermediate-representation refactor tum	burgholzer
add `Threads.@once`	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning multithreading numerical programming-language science scientific	chrstphrbrns
BENCH: fix disabled (broken) benchmarks	scipy/scipy	Benchmarks algorithms closember maintenance python scientific-computing scipy task	j-bowhay
Move to Julia 1.9, use extensions remove Requires for `collect_results` and Dataframes	JuliaDynamics/DrWatson.jl	hacktoberfest project-assistant project-management science science-research setup-tool simulations update	Datseris
Feature: Scaling tendency / Saturation Index	KingsburyLab/pyEQL	Good-First-Issue feature	rkingsbury
Research Needed: Investigate mixing rules for mixed salt properties	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Research Needed: Validity of speciation + Pitzer activity in native engine	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Goal: Increase test coverage to 90%	KingsburyLab/pyEQL	Good-First-Issue enhancement pkg	rkingsbury
Account for producer shutins	frank1010111/pywaterflood	enhancement help-wanted petroleum-engineering python reservoir rust	frank1010111
Add forecasting tutorial	frank1010111/pywaterflood	documentation help-wanted petroleum-engineering python reservoir rust	frank1010111
Benchmarks & benchmarking notebook	CQCL/qujax	enhancement jax python quantum	gamatos
Include example notebooks in documentation	CQCL/qujax	documentation jax python quantum	gamatos
DataInspector shall show Gray(val) for gray images	JuliaPlots/Makie.jl	DataInspector Makie enhancement gpu graphics julia julia-language plotting visualization	MariusDrulea
Consider replacing ternary expressions with multiplicative conditionals	lanl/singularity-eos	Performance	jhp-lanl
mypy doesn't see InstanceFlags	multiscale/muscle3		LourensVeen
Separate out unit and integration tests	scverse/scvi-tools	CI/CD P2 cite-seq deep-generative-model deep-learning human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq tests variational-autoencoder variational-bayes	martinkim0
Conversion from logits to probabilities happens on a batch by batch basis	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch v1.0.x	GabrielBianconi
options key is "ProcessDirectoryOptions" but app has since been renamed to "DicomDirectoryProcessor"	SMI/SmiServices	help-wanted priority/low	rkm
clarify time units in global options	SMI/SmiServices	help-wanted priority/low	rkm
Include function usage examples in docstrings/API documentation	CQCL/qujax	documentation jax python quantum	gamatos
Integrate Linux package manager commands into documentation	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	thewtex
Add check if dependencies are installed correctly when Micro Manager is installed via pip	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
[New copulas] Extreme values copulas	lrnv/Copulas.jl	copula julia	lrnv
Add a default plotting utility before running fits	sblunt/orbitize	easy enhancement help-wanted	sblunt
t8_cmesh_trees_get_tree returns NULL if not existing	DLR-AMR/t8code	adaptive-mesh-refinement cleanup high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow simulation workloadhigh	chiaraMaHe
`minimal_cycle_basis`	Qiskit/rustworkx	dag graph graph-theory python rust	quantumjim
Add method to save a simulation's reference values and units to file	cmelab/flowerMD	enhancement hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
Fit multiple peaks in chi2 map of interferometric observations	sblunt/orbitize	enhancement help-wanted	sblunt
Add accepted format type to load_seq function	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science documentation evolution genomics markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	cthwe
Documentation for podman build inconsistent with actual behaviour	containers/podman	Good-First-Issue containers docker documentation kind/bug kubernetes linux oci	deltoura
DOCS: Documentation is broken	firedrakeproject/firedrake	bug documentation straightforward wishlist	JDBetteridge
Providers can break completions when `isApplicable()` raises	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgcompleter	krassowski
Clean-Up t8_geometry.cxx	DLR-AMR/t8code	adaptive-mesh-refinement cleanup high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow shouldn't-take-long simulation workloadlow	Davknapp
Use pathlib instead of os	tardis-sn/carsus	astronomy atomic-database python	jvshields
Known problems installing Exo-Striker on MacOS ( with Anaconda with Version 0.85+)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem help-wanted multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	3fon3fonov
Implement conditional batch/layer normalization	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	martinkim0
Models for the folded background	renecotyfanboy/jaxspec	jax	renecotyfanboy
Move `get_c_interface` into toml files.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Is there any alternatives like `docker buildx imagetools` ?	containers/podman	Good-First-Issue containers docker kubernetes linux oci	rhatdan
Helper class for IPC memory handling?	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priomedium python rocm scipy tensor	kmaehashi
Document the support for 64-bit integer sparse matrix indices.	qutip/qutip	python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	hodgestar
speed up buildScoreCache	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Check and handle collinearity for all distributions.	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
export abn to .net file	furrer-lab/abn	bayesian-network binomial categorical-data enhancement gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
capture output of tests on windows to "dev/null"	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Numerical variations in IRLS for Poissons	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Session crashes / low-level error from irls_poisson_fast.cpp if no solution found by solve()	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
become PEP8 compliant	icesat2py/icepyx	closember community-driven hacktoberfest help-wanted icesat-2 python3	JessicaS11
Base.isidentifier(::Symbol) should check normalization	JuliaLang/julia	bug display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical parser programming-language science scientific	stevengj
Gradient dialect removes `qnode` attribute from quantum functions when creating helper functions.	PennyLaneAI/catalyst	autodiff automatic-differentiation bug compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Missing docstrings for public/exported symbols	JuliaLang/julia	docs hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	stevengj
Feature request: peptide position information in results	lazear/sage	bioinformatics enhancement mass-spectrometry proteomics	kabalak
Filter compile flags based on compile options.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Examples: Plasma-Based Acceleration	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Laser-Plasma Interaction	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Particle Accelerator & Beam Physics	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Nuclear Fusion	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Fundamental Plasma Physics	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
`@noinline` confuses `@code_typed` reporting wrong return type when return value is unused.	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical observability programming-language science scientific	NHDaly
Reimplement immutabledefaultdict	snad-space/ztf-viewer	enhancement	hombit
Make async qnodes specific to qnodes, not the whole JIT context.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
[Student copula] fitting	lrnv/Copulas.jl	copula julia	lrnv
change size of node labels?	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
Pushing custom information to the InferenceResult	biaslab/RxInfer.jl	bayesian-inference documentation enhancement inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference	ThijsvdLaar
Choose target ISA in `@code_llvm` and `@code_native`	JuliaLang/julia	feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	giordano
Provide std::vector interfaces for our user data functions	DLR-AMR/t8code	adaptive-mesh-refinement enhancement high-performance-computing hpc mesh modeling mpi parallel parallel-computing prioritylow shouldn't-take-long simulation workloadhigh	holke
template Riemann solvers on idir	AMReX-Astro/Castro	adaptive-mesh-refinement amr astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions	zingale
Inconsistent default values for `average` argument in classification metrics	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch question v1.3.x	StefanoWoerner
Some recipes fail when plotting empty vectors	JuliaPlots/Makie.jl	Collection Makie bug conversions gpu graphics julia julia-language plotting visualization	BambOoxX
Add classes for some of the OPV molecules we had in Planckton	cmelab/flowerMD	hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
FDTD Solver: `AMREX_RESTRICT` Pointers & References	ECP-WarpX/WarpX	Performance-optimization component-core gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Add `inspect` command	finsberg/gotranx	code-generation gotran help-wanted ode parser parsing	finsberg
Speedup of `_correlation_3op_dm`	qutip/qutip	python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	theodotk
Add generator to find cells filled with a universe	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Titles are not optional arguments for multi-group legends	JuliaPlots/Makie.jl	Legend-&-Colorbar Makie bug gpu graphics julia julia-language plotting visualization	Ezequiel92
Clearly mark analysis result names in documentation	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Median Quartiles and Box Plots	Qiskit/qiskit-experiments	enhancement qiskit	AbdullahKazi500
ISTARF reservoir parameters required even when not used	IMMM-SFA/mosartwmpy	enhancement	thurber
When using a quadlet, the generated RequiresMountsFor doesn't properly handle space characters	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci quadlet	lespea
np.median raises AssertionError for empty arrays while numpy returns nan	numba/numba	compiler cuda llvm numba numpy parallel python	leoschwarz
`nextafter` (via both `math` and `numpy`) missing for CUDA	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	s-m-e
Background MCC model: allow ionization by incident particles that are not electrons	ECP-WarpX/WarpX	component-collisions component-ionization gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Check that all notebooks run with the latest version of the code	StingraySoftware/stingray	astronomy astrophysics blackhole blackholes data-analysis docs fourier-analysis fourier-transform hacktoberfest help-wanted neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	matteobachetti
Create a function to store the local exceedence intensity maps as netcdf file	CLIMADA-project/climada_python	enhancement help-wanted	simonameiler
mark binomial_exact() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
mark tprob() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
Add more checks for the individual control parameters of `fit.control()` and `build.control()`	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache: doesn't work with `defn.res` and `which.nodes` provided together	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache: `max.parents` as list and `defn.res` doesn't work	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Which are valid combination of `cor.var`, `which.nodes` and `group.var`?	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildscorecache_mle(): catcov.mblogit = "single" is not implemented	furrer-lab/abn	bayesian-network binomial categorical-data enhancement gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
fitabn_mle(): `catcov.mblogit = "single"` is not implemented	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache doesn't work with `defn.res` and `which.nodes` provided together	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
fitabn_mle(): Return very low score when multinomial fit is NULL	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
More options for MDAnalysis trajectory playback	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Is it possible to allow `pathlib.Path` to be passed as argument to `Mesh()`?	firedrakeproject/firedrake	enhancement straightforward	p479h
Implement CFL condition for TLSPH	trixi-framework/TrixiParticles.jl	enhancement julia multiphysics simulation smoothed-particle-hydrodynamics	efaulhaber
Allow returning eigenstates as an operator.	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Ericgig
Enable checkpointing with autotune	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	martinkim0
Rendering latex in documentation	TeaspoonTDA/teaspoon	persistent-homology persistent-homology-graphs python signal-processing tda tda-python topological-data-analysis topological-signal-processing	lizliz
Degree centrality support	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	Paulo-21
Add `BeginStep` and `EndStep` as part of the context manager	jorgensd/adios4dolfinx	adios2 checkpointing fenicsx mpi-applications	finsberg
Add gradient mesh flag to `band_structure` program	HofstadterTools/HofstadterTools	band-theory condensed-matter-physics electromagnetism enhancement fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order	bartandrews
Add density of states flag to `band_structure` program	HofstadterTools/HofstadterTools	band-theory condensed-matter-physics electromagnetism enhancement fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order	bartandrews
Math expressions in caustics docs	Ciela-Institute/caustics	docs gravitational-lensing pytorch	ConnorStoneAstro
Incorrect result in computing `MulticlassRecall` macro average when `ignore_index` is specified	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning machine-learning metrics python pytorch v0.10.x v0.11.x v0.9.x v1.0.x v1.1.x v1.2.x v1.3.x v1.4.x	JeroenMandersloot
Add documentation for using Fraggle	MintonGroup/swiftest	documentation	profminton
Switch to pytest test fixtures	idaholab/MontePy	CI/CD api code-improvement mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Enable "Search Cell Outputs" in Find/Replace, disable "Replace" button when an output is highlighted	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgdocumentsearch tagSearch-and-Replace	JasonWeill
Spin Tracking	ECP-WarpX/WarpX	component-spin-tracking gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Create method for drawing synthetic data from a model	NIFTy-PPL/NIFTy	enhancement jax	Edenhofer
Implementation of Louvain Algorithm	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	jamesdbaker
Improve SEO of documentation to make package more findable.l	idaholab/MontePy	api documentation feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
New function: best.deadband a function to find the best deadband to use	Qepanna/goFlux	enhancement	Qepanna
Add more choices to the argument side in the function flux.plot	Qepanna/goFlux	enhancement	Qepanna
New function: autoID to create UniqueID from aux file without clicking on peaks	Qepanna/goFlux	enhancement	Qepanna
Suggestion: Limit the number of plots per page in the output of flux2pdf	Qepanna/goFlux	enhancement	Qepanna
New function: crop.meas to modify time columns in measurement data sets	Qepanna/goFlux	enhancement	Qepanna
New function: a Shiny app to align clocks on multiple instruments	Qepanna/goFlux	enhancement	Qepanna
Add warning message to import functions if wrong extension in raw file	Qepanna/goFlux	documentation	Qepanna
Add argument for "matchID" instead of UniqueID in flux2pdf	Qepanna/goFlux	enhancement	Qepanna
Support profiling without source code changes	google/jax	enhancement jax	cheshire
Add Qobj method for getting data as a numpy array shaped like a tensor rather than an array	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nlupugla
Deconvolving Cls	heracles-ec/heracles	astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	JaimeRZP
replace BatchNorm with LayerNorm	mackelab/sbi	API-changes architecture bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	bkmi
replace BatchNorm with LayerNorm	sbi-dev/sbi	API-changes architecture bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	bkmi
Contribution: Add new audio/speech metrics for generative audio	PyTorchLightning/metrics	New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch topic-Audio	d-caviedes
Replace scalar instances of `np.sqrt`, `np.cos`, etc. with `math` alternatives	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task	janbridley
Implementing custom multi quantile loss.	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial	mat-ej
Store weights in metadata of binned spectra and mixmats	heracles-ec/heracles	astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	ntessore
Add pgstar decorator to mark solver progress in Trho profiles + Kippenhahn diagrams	MESAHub/mesa	astronomy astrophysics binary-evolution enhancement fortran stellar-astrophysics stellar-evolution	Debraheem
Add `mul_hi`	JuliaLang/julia	feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning maths numerical programming-language science scientific	LilithHafner
ApplyStencil: Shared Memory & Fixed Stencils	ECP-WarpX/WarpX	Performance-optimization gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
suggestions for write_cl	healpy/healpy	Good-first-issue HelpUs	hivon
Revise argument list in setups	trixi-framework/TrixiParticles.jl	documentation julia multiphysics simulation smoothed-particle-hydrodynamics	LasNikas
Convert example scripts from documentation to code-blocks except for those that generate outputs.	MintonGroup/swiftest	documentation	profminton
Missing VDW radius values for rarely used elements	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	rbdavid
Code maintainability - utils/__init__.py split (?)	bluesky/bluesky	bluesky dataacquisition design-discussion hackathon maintenance python	stan-dot
Warn if Laser Plane is too Close to Absorbing/Thermal Boundary	ECP-WarpX/WarpX	changes-input-scripts-/-defaults component-boundary gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Implementation of Community Detection via Semi-Synchronous Label Propagation Algorithms	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	gulldan
Model Freezing	Cambridge-ICCS/FTorch	Hacktoberfest deep-learning enhancement fortran hacktoberfest interoperability machine-learning python pytorch torch	jatkinson1000
test and bugfix arm architecture support	MrMinimal64/multivar_horner	bug evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	jannikmi
Improve test coverage in `callbacks/broker.py`	bluesky/bluesky	bluesky dataacquisition hackathon python	DominicOram
The examples in the document are inconsistent with the API interface	JuliaDynamics/DrWatson.jl	documentation hacktoberfest project-assistant project-management science science-research setup-tool simulations	nighthink
Code warntype should show print the unstable SSA values in red/yellow	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	gbaraldi
Units discrepancies between __init__ and get_amount	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Add static type annotations	dask/dask	dask numpy pandas pydata python scikit-learn scipy	sam-goodwin
Associate fields with catalogues in config files	heracles-ec/heracles	CLI astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	ntessore
Review type ignore statements	nci/scores	climate coding contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python refactoring verification weather xarray	tennlee
Drop support for Python3.8 and 3.9	bluesky/bluesky	bluesky dataacquisition hackathon python	callumforrester
`docker login` with docker.io creds "successfully" logs-into `registry.fedoraproject.org` then fails to push to `registry-1.docker.io`	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci	rhatdan
Document the option to collapse cells while displaying the first line	jupyterlab/jupyterlab	documentation jupyter jupyterlab	danmcmahill
Show `; attributes...` in plot function docstrings	JuliaPlots/Makie.jl	documentation enhancement gpu graphics julia julia-language plotting visualization	jariji
Make the block comment work in Python (and other languages without block comments)	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgshortcuts statusNeeds-Discussion	krassowski
Feature: Check if set of vectors constitute a tight frame	vprusso/toqito	convex-optimization feature-request help-wanted linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Regularize provider/service interface	Qiskit/qiskit-experiments	qiskit	coruscating
Add option to have 'dark' figure output with black background	jgieseler/solarmach	enhancement esa heliophysics space-physics spacephysics spaceweather	jgieseler
WGLMakie cannot draw Mesh with Float64 normals.	JuliaPlots/Makie.jl	Makie WGLMakie bug conversions gpu graphics julia julia-language plotting visualization	jacobleft
Make `DataConverter` accept a list of files to convert instead of only a directory	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	RasmusOrsoe
Small bug in dynamic completeness calculation	dsavransky/EXOSIMS	bug	turmon
Docstrings - some are missing references (paper or online source describing the metric)	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add Yourself to Our Community Map! :sparkles:	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Jax version of VAEMixin	scverse/scvi-tools	backlog cite-seq deep-generative-model deep-learning enhancement human-cell-atlas jax scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	justjhong
parseTH for TH3x	JuliaHEP/UnROOT.jl	cern-root enhancement hacktober hep high-energy-physics julia particle-physics	tamasgal
Modify the extract shorelines to not require transects	SatelliteShorelines/CoastSeg	V3 colab earth-engine jupyter landsat python	2320sharon
Request: Spearman rank correlation	nci/scores	climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation new-metric oceanography pandas python verification weather xarray	nicholasloveday
Duplicate micro-simulations on interior boundaries of macro-domain decomposition	precice/micro-manager	bug coupling macro-micro multiphysics multiscale research-and-development	mathiskelm
User unfriendly behavior of attributes.all when stored	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh type/usability workflow workflow-engine workflows	agoscinski
A simple example to showcase autodiff	mind-inria/mri-nufft	cuda gpu mri mri-reconstruction nufft numerical-methods numpy tensorflow torch	chaithyagr
docs: document nextalign-like use-case	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna docs help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus	ivan-aksamentov
InternalFeatureImportance is in documentation but not implemented	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning model-analysis python r tutorial	mareksimunek
Need CI to test package publishing workflow	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
More user friendly yes/no prompt in `verdi computer delete`	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/verdi type/usability workflow workflow-engine workflows	agoscinski
GPU compatible (L-)C2ST	mackelab/sbi	bayesian-inference enhancement likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	JuliaLinhart
GPU compatible (L-)C2ST	sbi-dev/sbi	bayesian-inference enhancement likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	JuliaLinhart
Additional Preset: Geothermal Brine	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Add MathJax equation for Murphy Score (in both Continuous and Probability) docstrings	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to isotonic fit docstrings (in each of continuous, probability and processing)	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to ROC (scores.probability.roc_curve_data) docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to FIRM docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to Diebold Mariano docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add EnumAttr to the Gradient Dialect for different differentiation methods.	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Add a function that will be called after the lowering process is finished.	PennyLaneAI/catalyst	autodiff automatic-differentiation frontend jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
TODO in `is_separable` check	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
FR: Add ability to change the "reset zoom" binding	JuliaPlots/Makie.jl	Axis Makie enhancement gpu graphics interaction julia julia-language plotting visualization	david-macmahon
Need a chunker for cycles	euroargodev/argopy	argo argo-data argo-floats enhancement help-wanted internals oceanography performance python stale	gmaze
Make it possible to choose bounds_on for time averaging algorithm	UU-ER/AdOpT-NET0	enhancement new-in-the-team	JeanWi
Improve wind turbine model	UU-ER/AdOpT-NET0	enhancement new-in-the-team	JeanWi
Add references to MCNP Manual in docstrings for Input classes	idaholab/MontePy	api documentation mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
Remove LogoutButton	plotly/dash	P3 bioinformatics charting dash dash-3.0 data-science data-visualization feature finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	AnnMarieW
Add a small figure mode	jgieseler/solarmach	enhancement esa heliophysics space-physics spacephysics spaceweather	jgieseler
Investigate `QuaternaryHeap` for shortest-path and other functions	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
util/eccanom zero-size Exception	dsavransky/EXOSIMS	bug help-wanted	turmon
Allow specification of values to be summarised in the _make_summary()-method	jepegit/cellpy	battery chemistry code-improvements data-analysis electrochemistry enhancement opensource physics	morrowrasmus
Compute the nonnegative rank of a nonnegative matrix	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
`NUM_GPU_DEVICES_PER_NODE` in testing infrastructure	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Documentation suggests sudo make install	precice/aste		MakisH
Paraview cannot open ASTE output .vtu files	precice/aste		MakisH
ASTE assumes data name Data, ignoring CLI option	precice/aste		MakisH
Option --mesh does not work with a file extension	precice/aste		MakisH
Bars in fraction and square root (LaTeX string) visible even if set to false	JuliaPlots/Makie.jl	Attributes Makie bug gpu graphics julia julia-language plotting text visualization	cyanescent
✨ Mark and Sweep Garbage Collection for DD Package	munich-quantum-toolkit/core	DD c++ enhancement mqt quantum-computing quantum-intermediate-representation refactor tum	burgholzer
Update the Structural Alignment section of the Tutorial to include CEAlign	biopython/biopython	Documentation bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Input a bad channel list (3D tools)	CIRADA-Tools/RM-Tools	enhancement	Cameron-Van-Eck
`colorrange` is an invalid attribute for `contourf`	JuliaPlots/Makie.jl	(tri)contour(f) Attributes Makie bug colors gpu graphics julia julia-language plotting visualization	asinghvi17
DOC: `integrate`: tutorial `help` command output is out of date	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.integrate	mdhaber
Implement batching	Cambridge-ICCS/FTorch	deep-learning enhancement fortran hackathon hacktoberfest interoperability machine-learning python pytorch torch	jwallwork23
Move channel dim to channel props	vprusso/toqito	bug convex-optimization help-wanted linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
[MNT] Improve chainopy docs	aadya940/chainopy	bayesian-data-analysis bayesian-inference bayesian-statistics data-analysis data-science deep-learning forecasting machine-learning markov-chain markov-model markov-process time-series time-series-analysis	aadya940
Figure out PTE convergence issues	lanl/singularity-eos	bug	jhp-lanl
Layout as list of components does not work with Dash Pages page_container	plotly/dash	P3 bioinformatics bug charting dash data-science data-visualization finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	antonymilne
Add coverage per CDS to output	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	joverlee521
Updated, self-maintained resource to list exhaustively existing remote modules	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Add EOS to python interface	lanl/singularity-eos	enhancement interface	jhp-lanl
Go through and add thumbnails to each tutorial gallery entry	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
Make better implementations for `fast_array_util.py	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	wkerzendorf
Documentation and tests still use "_mutated" attribute	idaholab/MontePy	api documentation mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
Heuristic for cell height should consider preferred text output types	jupyterlab/jupyterlab	bug jupyter jupyterlab	krassowski
Switch to pyproject.toml	multiscale/muscle3		LourensVeen
Improve traceback messages	bluesky/bluesky	bluesky dataacquisition maintenance python user-IO	stan-dot
Apply Classification Methods to Real-Time Collected Experimental Data	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response	samirmartins
Programming Arduino Directly from PYDAQ	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response	samirmartins
Warnings when building the doc	radis/radis	astrophysics closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo 😎.	minouHub
Mathjax: x and y vs forecast and observed	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
reprojection tutorial	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	nicholasloveday
Doc Generation Error - HTTP Error 429	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeBug-Fix	robinroy03
Implement mass matrix in Barker's kernel	blackjax-devs/blackjax	adaptation bayesian-inference enhancement hamiltonian-monte-carlo help-wanted mcmc probabilistic-programming sampling-methods	AdrienCorenflos
Add support for older versions of MCNP	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Followup documentation for petroff color sequence	matplotlib/matplotlib	Difficulty-Medium Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
MontePy Can't agree on how long a line is	idaholab/MontePy	api bugs low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Preserve case when writing surface cards	idaholab/MontePy	api low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
MontePy adds unnecessary blank lines at the end of a file	idaholab/MontePy	api low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
Warn when excess blank lines show up in an input model	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Implement Pytest-cov, and make coverage more meaningful	idaholab/MontePy	CI/CD api mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Implement Property based Testing	idaholab/MontePy	CI/CD api mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Make ITK keywords in PyPI consistent	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
BERT score: maximum at self-comparison, symmetry, invariance to additional items	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch v1.4.x	GPPassos
Documentation: Carbonate system tutorial notebook	KingsburyLab/pyEQL	Good-First-Issue docs	rkingsbury
Add support for `qml.Snapshot`	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	joeycarter
nextclade run with optional dataset tag input	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	jrotieno
DOCS: Website documentation about solvers is wildly out of date	firedrakeproject/firedrake	documentation	JDBetteridge
[ENH]: Support avif as output format	matplotlib/matplotlib	Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt status-upstream-fix-required tk wx	rotsee
Support trailing commas	finsberg/gotranx	code-generation enhancement gotran help-wanted ode parser parsing	finsberg
Add examples to docstrings	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	nicholasloveday
Add issue templates	heracles-ec/heracles	astronomy cosmology healpix large-scale-structure maintenance python spherical-harmonics	ucapbba
Add a code of conduct	heracles-ec/heracles	astronomy cosmology healpix large-scale-structure maintenance python spherical-harmonics	ucapbba
Expose more hyperparameters of FMPE / NPSE	mackelab/sbi	bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation performance pytorch simulation-based-inference	michaeldeistler
Expose more hyperparameters of FMPE / NPSE	sbi-dev/sbi	bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation performance pytorch simulation-based-inference	michaeldeistler
Review docstring and possibly raise a userwarning for pearsonr based on preserve_dims=all	nci/scores	climate contingency-table dask documentation enhancement forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
`qjit(static_argnums=...)` fails when the marked static argument has a default value	PennyLaneAI/catalyst	autodiff automatic-differentiation bug jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	paul0403
Shift default zero phase to epoch of minimum	snad-space/ztf-viewer	enhancement	hombit
`warpx --version`	ECP-WarpX/WarpX	gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Append Sequence of Renumbered Items	idaholab/MontePy	api feature-request low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
Change `jq` query in CI scripts to Python code	aiidateam/aiida-core	aiida computational-science data-provenance database priority/quality-of-life provenance scheduler ssh topic/devops workflow workflow-engine workflows	agoscinski
BUG: Cannot read GDB file using a geometry filter (mask)	geopandas/geopandas	bug geoparquet geospatial pandas python spatial	shiyuning
Feature: OperatorSinkhorn function	vprusso/toqito	convex-optimization feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
DOC warnings and other QoL improvements	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation state-needs-PR	robinroy03
create CMake option for max number of ranks	Cambridge-ICCS/FTorch	Hacktoberfest build deep-learning fortran hacktoberfest interoperability machine-learning python pytorch torch	TomMelt
Move straggler test objects into test folders	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
ImportError: cannot import name 'rvmod_for' from partially initialized module 'RV_mod.rvmod' (most likely due to a circular import)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	RubiscoYHY
Make message test actually valid	idaholab/MontePy	api code-improvement feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
DOC: conda-forge `compilers` package now also usable on windows	scipy/scipy	Documentation algorithms closember python scientific-computing scipy	h-vetinari
Dask.Visualize ignoring engine setting	dask/dask	bug dask dataframe numpy pandas pydata python scikit-learn scipy	frbelotto
Add merge rotation patterns for `qml.Rot` and `qml.CRot`	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	paul0403
Rewrite the stats `tohist()` method	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
Bifurcation of the --muller-mandel-sigma-kick option	TeamCOMPAS/COMPAS	enhancement	dumbscholar
Change `expected` to `expected_fh` if it is a file handler	tardis-sn/tardis	astrophysics python radiative-transfer science supernova	atharva-2001
Repeated analysis duplicates auto generated manuscript prose	smith-chem-wisc/MetaMorpheus	Bug calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	nbollis
add examples to Gallery	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
Improving MethodError message for anonymous functions	JuliaLang/julia	error-messages hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	fonsp
[Bug] `torchmetrics.functional.classification.binary_auroc` gives wrong results when logits are large	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch v1.4.x v1.6.x v1.7.x	zbingsong
New Score Request: Add "percent within X" metric	nci/scores	climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation new-metric oceanography pandas python verification weather xarray	tennlee
add example with multinomial node.	furrer-lab/abn	bayesian-network binomial categorical-data documentation enhancement gaussian grouped-datasets help-wanted mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Add edge collapses to slicers	DavidLapous/multipers	cpp cython enhancement help-wanted icml-2024 multiparameter-persistence neurips-2023 persistent-homology python tda topological-data-analysis	DavidLapous
Enhancement: prevent accidental double-setting of pH	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Docs: Add process - focused diagrams	bluesky/bluesky	bluesky dataacquisition documentation enhancement low-priority maintenance python	stan-dot
SolaraViz docs	projectmesa/mesa	agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models	quaquel
Wrong internal version of `TAxis` when parsing TH2F histogram	JuliaHEP/UnROOT.jl	bug cern-root hacktober help-wanted hep high-energy-physics julia particle-physics	MarcoRiggirello
BUG: `extruded_shallow_water` demo is not tested	firedrakeproject/firedrake	bug testing	connorjward
Add better Matplotlib tests	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	IvanIsCoding
Implement an option to print out instructions in the null device	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	jay-selby
TST: Make test_sql.py parallelizable	pandas-dev/pandas	IO-SQL Testing alignment data-analysis data-science flexible pandas python	WillAyd
Wrap more GPU utils	Cambridge-ICCS/FTorch	deep-learning enhancement fortran gpu hackathon hacktoberfest interoperability machine-learning python pytorch torch	jwallwork23
Expanded grid_graph functionality	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	awstasiuk
Prevent Emulator Class Name Conflicts	alan-turing-institute/autoemulate	hut23 hut23-1468 improve-code-quality	aranas
[Bug]: I give an RGB image to imsave but I don't have the right color map!	matplotlib/matplotlib	Difficulty-Easy Good-first-issue data-science data-visualization gtk matplotlib plotting python qt status-confirmed-bug tk wx	zef126
Accessibility: Adding alt text to images in `scores` documentation	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting help-wanted model-validation oceanography pandas python verification weather xarray	Steph-Chong
Improve automatic periodic boundary detection heuristic	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Multiple time integrators don't work when we use AMR.	idaholab/moose	C-Framework Good-first-issue P-normal T-defect amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	grmnptr
Check boundary tasks in examples	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon refactor	pgrete
Improve performance benchmarks	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
ENH: new_alignment.counts_per_pos should use a numba decorated function	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	KatherineCaley
Test against annoying float values?	idaholab/MontePy	api code-improvement feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Replace our use of scipy's interpolate.interp1d	nci/scores	climate coding contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
Conversion as LinearOperator from scipy	mind-inria/mri-nufft	cuda feature-request gpu mri mri-reconstruction nufft numerical-methods numpy operators tensorflow torch	paquiteau
`GeneralizedDiceScore` yields 0 scores when using `per_class=True` for samples where class is not present	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch v1.6.x v1.7.x	nkaenzig
ENH: optimize.root: warn when inner parameters are ignored with `method='krylov'`	scipy/scipy	algorithms closember enhancement python scientific-computing scipy scipy.optimize	lucascolley
bug: set default duration in video stimulus in None instead of 0	AutoResearch/sweetbean	automated-documentation behavioral-experiments bug online-behavioral-experiments synthetic-participants	younesStrittmatter
Add "See also" to the regex function docstrings	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
Make Conjugate Gradient Descent work on GPU	mind-inria/mri-nufft	cuda gpu mri mri-reconstruction nufft numerical-methods numpy perf tensorflow torch	paquiteau
DataInspector fails on meshscatter when markersize is an integer	JuliaPlots/Makie.jl	DataInspector Makie bug gpu graphics julia julia-language plotting visualization	BambOoxX
Some introspection about molecular structure	lanl/singularity-eos	enhancement help-wanted	Yurlungur
Implement parseTH for 3D histograms	JuliaHEP/UnROOT.jl	cern-root enhancement hacktober hep high-energy-physics julia particle-physics	tamasgal
Add more "versions" to metadata in start document	bluesky/bluesky	bluesky dataacquisition enhancement metadata python	DiamondJoseph
Visualization Tutorial	projectmesa/mesa	agent-based-modeling agent-based-simulation complex-systems complexity-analysis docs gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models visualisation	nicolas-starck
Refactor: Duplicate functionality in basis and standard basis	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language refactor research semidefinite-programming unitaryhack	vprusso
Feature: Random superoperator (quantum channel)	vprusso/toqito	convex-optimization feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
MAINT: Cython lint failures in build output	scipy/scipy	Cython algorithms closember maintenance python scientific-computing scipy	lucascolley
Add Docker image for CI	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
Use `jldoctest` wherever possible	JuliaLang/julia	docs hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	LilithHafner
Cannot disable convergence plots	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	atharva-2001
RPRMakie errors in `render_rpr`	JuliaPlots/Makie.jl	RPRMakie bug gpu graphics julia julia-language plotting visualization	rafaqz
Standard TARDIS Workflow Notebook does not find `log_level` and other configuration settings	tardis-sn/tardis	astrophysics python radiative-transfer science supernova	atharva-2001
BUG: CustomBusinessDay not respecting calendar	pandas-dev/pandas	Bug Frequency alignment data-analysis data-science flexible pandas python	benmgrant
Broadening with multiple species	radis/radis	astrophysics closember combustion dbexomol enhancement exoplanets hitemp hitran infrared physics plasma plasma-physics radiation spectra spectroscopy	minouHub
ElasticArrays input broken for arrows	JuliaPlots/Makie.jl	Makie arrows bug conversions gpu graphics julia julia-language plotting visualization	chakravala
TimeseriesSurrogates.jl/test/test_uncertaindata.jl is not included in runtests.jl	JuliaDynamics/TimeseriesSurrogates.jl	hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries	smidmatej
`QueryBuilder` can't find codes when looking for `AbstractCode`	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh type/bug workflow workflow-engine workflows	edan-bainglass
Thermal Scattering Law does not require suffix	idaholab/MontePy	api bugs low-priority mcnp mcnp6 monte-carlo neutronics parsers-are-hard radiation-transport	tjlaboss
Add links to examples from the docstrings and user guide	scikit-learn/scikit-learn	Documentation Meta-issue Sprint data-analysis data-science machine-learning python statistics	StefanieSenger
Bug Report Template: Make example file valid	idaholab/MontePy	api low-priority mcnp mcnp6 monte-carlo neutronics radiation-transport	tjlaboss
implement String(::Base.Generator)	JuliaLang/julia	hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific strings	StefanKarpinski
Obtaining H(s) and H(z) from ARX model	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pyside6 python real-datasets step-response	samirmartins
parameter names in sensitivity analysis	alan-turing-institute/autoemulate	hut23 hut23-1468	mastoffel
`MemoryRef` bounds errors can be confusing	JuliaLang/julia	arrays display-and-printing error-messages hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	LilithHafner
Add visualisations method to results	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Ericgig
QC metrics	lazear/sage	bioinformatics enhancement mass-spectrometry proteomics	KlemensFroehlich
DOCS: Check spelling in docstrings	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	asoplata
[chore] Change array list attribute to integer attribute	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Unclear `intensity_thres` attribute of Hazard class	CLIMADA-project/climada_python	bugfix task	chahank
Failure to quote symbols in pretty printing in `@test` failures	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific testsystem	KristofferC
Avoid using aggregate types when lowering Hamiltonian	PennyLaneAI/catalyst	autodiff automatic-differentiation chore enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
`Transport` & `pytest`: garbage cannot be removed `[Errno 39]`	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh workflow workflow-engine workflows	khsrali
serialize extendr Strings	extendr/extendr	api-wrapper extension ffi-bindings r rust	kbvernon
DOCS: Add/Expand docstrings of all functions with arguments	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	asoplata
DOCS: Fix inconsistencies in existing parameter docstrings	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	asoplata
Add Python tests for `newman_weighted_closeness_centrality`	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
Flakey test on windows	bluesky/bluesky	bluesky dataacquisition python	evvaaaa
Add argument docstrings and type hints where missing	alan-turing-institute/autoemulate	hut23 hut23-1468	cisprague
ENH: improve performance of `.counts_per_seq()` method	cogent3/cogent3	assigned bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
ENH: refactor `.get_motif_probs()` to using array operations	cogent3/cogent3	assigned bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
API: modify new_moltype.strand_symmetric_motifs to check is_nucleic	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
sampling via pymc raises TypeError since pymc v5.20.1	mackelab/sbi	bayesian-inference bug hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	janfb
`scipy.interpolate.interp1d` is discouraged	pvlib/pvlib-python	enhancement photovoltaic python renewable-energy renewables solar-energy	kandersolar
sampling via pymc raises TypeError since pymc v5.20.1	sbi-dev/sbi	bayesian-inference bug hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	janfb
Advanced testing for `rustworkx-core`	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	IvanIsCoding
Support stopsignal in kube files	containers/podman	Good-First-Issue containers docker kind/feature kube kubernetes linux oci	saolof
Add networkx's `random_regular_graph`	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	frankharkins
The is operator in the jitted code does not work for structref instance.	numba/numba	bug---miscompile compiler cuda llvm numba numpy parallel python	ringobanana-3900
Trajectory averaging outside of frame range	BradyAJohnston/MolecularNodes	API biochemistry blender blender-addon bug geometry-nodes molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Have a section that explains how to convert a model to batched version with auto updates	biaslab/RxInfer.jl	bayesian-inference documentation inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference	bvdmitri
Avoid `StreamlitDuplicateElementId` error when the same widget is in the main area and sidebar	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.sidebar machine-learning python streamlit typeenhancement	sfc-gh-jrieke
Implement Quantum Gate commutation rules in Catalyst	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	dime10
argument `bugsfile` in `simulateAbn()` is confusing	furrer-lab/abn	bayesian-network binomial categorical-data documentation gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Restart should make MOOSE load the checkpoint file for the mesh	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	YaqiWang
Fix for ExoStriker GUI Issues on Ubuntu 22.04 (Wayland) – Xorg & PyQt6 Required	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	ezaharieva
cmake race condition - looping example	Cambridge-ICCS/FTorch	build deep-learning fortran hacktoberfest interoperability machine-learning python pytorch torch	TomMelt
Deprecate cogent3.maths.stats.distribution.binomial_exact	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science deprecated evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
Instantiating a qt.QobjEvo with a qt.coefficient	qutip/qutip	BUG python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	kylewamer
DOC: optimize.root: default values of optional parameters not documented	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.optimize	Mark799
Add `show_time` parameter to `st.cache_data` and `st.cache_resource`	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurecache featurest.spinner machine-learning python streamlit typeenhancement	VERBOSE-01
Keep dependency versions unpinned to specific versions unless needed	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Contents of isort.cfg should be put into pyproject.toml	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Add MyPy to pre-commit hook	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Add boundary condition type to repr for surfaces	idaholab/MontePy	api feature-request mcnp mcnp6 monte-carlo neutronics radiation-transport	MicahGale
Porting QETLAB functions to toqito	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Refactor pairplot function	mackelab/sbi	API-changes bayesian-inference hackathon karma likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	gmoss13
Refactor pairplot function	sbi-dev/sbi	API-changes bayesian-inference hackathon karma likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	gmoss13
Add `sphinx-hoverxref` to docs	vprusso/toqito	convex-optimization documentation linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Magic numbers should be moved to constants.h	TeamCOMPAS/COMPAS	severity_minor urgency_low	reinhold-willcox
Support for Python 3.13	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
nautilus	sblunt/orbitize	enhancement help-wanted	sblunt
Using `tardis.__path__` to determine the TARDIS module location can break in edge cases	tardis-sn/tardis	astrophysics bug-lady_beetle python radiative-transfer science supernova	andrewfullard
Default values for settings	multiscale/muscle3		LourensVeen
Function to compute the maximum value of Bell inequality	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Function to compute the max probability of distinguishing two quantum channels	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Function to generate a basis for an entangled subspace	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Display Catalyst Version in `quantum-opt --version` Output	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	sengthai
Make `st.warning` etc pick up icons at the beginning of the text	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.info featurest.success featurest.warning machine-learning python streamlit typeenhancement	jrieke
`icon` parameters should accept Emoji shortcodes	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featuremultipage-apps featurest.badge featurest.button featurest.download_button featurest.error featurest.form_submit_button featurest.info featurest.link_button featurest.set_page_config featurest.success featurest.warning machine-learning python streamlit typeenhancement	jrieke
docs: move general class docstrings from __init__ to class level for better API refs	mackelab/sbi	bayesian-inference docs likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	janfb
docs: move general class docstrings from __init__ to class level for better API refs	sbi-dev/sbi	bayesian-inference docs likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	janfb
Revamp HTML validation error popup	streamlit/streamlit	areawidgets data-analysis data-science data-visualization deep-learning developer-tools featurest.number_input machine-learning python streamlit typeenhancement	jrieke
Set a default tab in `st.tabs`	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.tabs machine-learning python streamlit typeenhancement	jrieke
Allow `Vector{Union{Nothing, Int}}` in `color=`	JuliaPlots/Makie.jl	bug colors gpu graphics julia julia-language plotting visualization	jariji
Add number density to methods in packing.py	mosdef-hub/mbuild	enhancement mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	StephMcCallum
With date range selected in `st.date_input`, hovered dates should change color	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.date_input machine-learning priorityP4 python statusconfirmed streamlit typebug	sfc-gh-pchiu
Circular import with kraus_to_choi in channels directory	vprusso/toqito	bug convex-optimization linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
networkx.hypercube_graph documented as having nodes indexed by integers, actually uses n-tuples	networkx/networkx	Good-First-Issue complex-networks graph-algorithms graph-analysis graph-generation graph-theory graph-visualization python type-Documentation	kral-alex
Missing documentation for `depolarizing` and `dephasing`	vprusso/toqito	convex-optimization documentation linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	tnemoz
Implement the Rényi entropy of order $\alpha$ of a quantum state	vprusso/toqito	convex-optimization enhancement feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	tnemoz
Implement the conditional Rényi entropies	vprusso/toqito	convex-optimization enhancement feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	tnemoz
Increase Unit Test Coverage	MESAHub/mesa	astronomy astrophysics binary-evolution fortran rainy-day stellar-astrophysics stellar-evolution	pmocz
Improve `replace_ir` / `compile_executable` tests	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
`( __CUDACC_VER_MAJOR__ >= 11 ) && ( __CUDACC_VER_MINOR__ >= 2 )`	cupy/cupy	catbug contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priohigh python rocm scipy tensor to-be-backported	SonOfLilit
Use `TYPE_CHECKING` if necessary	optuna/optuna	code-fix contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python	nabenabe0928
Enhance `tensor_comb` to handle different types of combination requests	vprusso/toqito	convex-optimization enhancement linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
✨ MLIR - Rotation Gate Merge Pass/Pattern	munich-quantum-toolkit/core	MLIR c++ enhancement mqt quantum-computing quantum-intermediate-representation tum	DRovara
Add defaults or require mandatory inputs for configuration parameters	precice/micro-manager	breaking-change bug coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
Add networkx's `node_list` option to `adjacency_matrix`	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	michaelweinold
Explore using `uv` for documentation and tests	Qiskit/rustworkx	dag dependencies documentation graph graph-theory python rust	IvanIsCoding
Make docstring examples executable	vprusso/toqito	convex-optimization dependencies documentation linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Silence known warnings in testing code	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon bug geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology testing visualisation	BradyAJohnston
✨ Control parsing and convertion of phase gates	munich-quantum-toolkit/core	enhancement feature mqt quantum-computing quantum-intermediate-representation tum usability	lsschmid
Downlowad transformed data	snad-space/ztf-viewer	enhancement	emilleishida
Pdb chained exception decumentation issue	ipython/ipython	closember data-science debugger documentation hacktoberfest ipython jupyter notebook python repl spec-0	Carreau
Ensure usage of `np.identity` is normalized in docstrings	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Add docs for the fortran API	lanl/singularity-eos	documentation help-wanted	Yurlungur
Off-resonance correction works in opposite convention	mind-inria/mri-nufft	cuda gpu mri mri-reconstruction nufft numerical-methods numpy off-resonance-correction tensorflow tests torch	chaithyagr
Provide a path to the toml file for the ruff action	vprusso/toqito	convex-optimization dependencies devops linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Refactor: Move `npa_hierarchy.py` from `helper/` to `state_opt/` module	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language refactor research semidefinite-programming unitaryhack	vprusso
Support .ndjson import from CZI CryoET Files	BradyAJohnston/MolecularNodes	API biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Add tests for `freud.plot` and make the module public	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis enhancement molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task	janbridley
Add Arm and nvc++ compilers to configure.py	PrincetonUniversity/athena	help-wanted	felker
`.str.split` coerces `dtype` to `object`	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy	noahblakesmith
Exception messages should be one-click to copy	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.exception machine-learning python streamlit typeenhancement	sfc-gh-wschmitt
Feature: Calculate the mutual coherence for a set of vectors	vprusso/toqito	convex-optimization feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Feature: Generate random linearly independent set of vectors	vprusso/toqito	convex-optimization feature-request linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	vprusso
Richer description in check_consistency function	mathLab/PINA	deep-learning differential-equations enhancement equation-learning hacktoberfest lightining low-priority machine-learning modeling neural-networks neural-operators ode pde physics-informed physics-informed-neural-networks pinn python pytorch pytorch-lightning torch-geometric	dario-coscia
✨ Support for Qiskit's `IfElseOp`	munich-quantum-toolkit/core	Core c++ feature minor mqt quantum-computing quantum-intermediate-representation refactor tum	burgholzer
✨ MLIR - Conversion from/to CUDA-Q's `quake` dialect	munich-quantum-toolkit/core	MLIR c++ feature mqt quantum-computing quantum-intermediate-representation tum	burgholzer
Docs: --mount should have a dedicated section describing each type	containers/podman	Good-First-Issue containers docker documentation kubernetes linux oci triaged	fice-t
Docs: Explicitly compare --mount with alternative flags (-v, --tmpfs)	containers/podman	Good-First-Issue containers docker documentation kubernetes linux oci triaged	fice-t
Phasegate behaves strangely for certain angles	qutip/qutip	BUG python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	tuureorell
Translate emojis back to their name?	JuliaLang/julia	display-and-printing feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific 😃🍕-and-other-emoji	eschnett
histogram animations are animated incorrectly	qutip/qutip	python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nwlambert
Add a docs extra for install	alan-turing-institute/autoemulate	documentation enhancement hut23 hut23-1468	sgreenbury
show with yellow color if a parameter is at limit, in jupyter	scikit-hep/iminuit	c-plus-plus enhancement fitting optimization python scikit-hep	Joshuazh
Add option to `OptimadeClient` to automatically cache results to an OPTIMADE JSONL file	Materials-Consortia/optimade-python-tools	client help-wanted openapi optimade optimade-api optimade-python optimade-specification python suggestions	ml-evs
Refactor accessor QC filter as an extension	euroargodev/argopy	argo argo-data argo-floats breaking-change internals oceanography python	gmaze
Improve logging throughout codebase	alan-turing-institute/autoemulate	hut23 hut23-1468 refactor	EdwinB12
Postselect missing from `assemblyFormat` in `MeasureOp`	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
`renv` with `pak` mention in README	furrer-lab/abn	bayesian-network binomial categorical-data documentation gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
`Sys.CPU_NAME` is `"apple-m1"` on Apple M4	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific systemapple-silicon systemmac	danielwe
Remove redundant `OptionalAttr` modifier on Unit attributes	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	dime10
support `target` parameter for `generate_random_paths`	networkx/networkx	Good-First-Issue complex-networks graph-algorithms graph-analysis graph-generation graph-theory graph-visualization python type-Enhancements	Schefflera-Arboricola
Change `docs` dependency syntax	vprusso/toqito	convex-optimization dependencies devops linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Add `linkcheck` workflow	vprusso/toqito	bug convex-optimization dependencies documentation help-wanted linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre
Add executable code blocks	vprusso/toqito	convex-optimization linear linear-algebra matrix-analysis non-quantum nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack	purva-thakre