Title	Repository	Tags	Posted By
Python classes defining __slots__ should automatically compile to extension classes	cython/cython	Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	robertwb
Robust default color scheme	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	dimaqq
Add install instructions when dependencies are missing	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0	shazow
[docs] update make.cmd	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0 windows	Carreau
Fallback to pydoc if site._Helper is not defined	ipython/ipython	bug closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	eudoxos
weighted stats class for pandas objects	statsmodels/statsmodels	comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist	jseabold
Add option to project `separation` onto an ellipse	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy coordinates python science	eteq
diagnostic plots for regression - another version	statsmodels/statsmodels	comp-graphics count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis wishlist	josef-pkt
Improve the example scripts	NeuralEnsemble/PyNN	enhancement	apdavison
improve interpolation in IERS data	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy python science time	mhvk
Test coverage for scipy.signals.windows needs improvement	scipy/scipy	algorithms closember python scientific-computing scipy scipy.signal task	ankit-maverick
Is there a function to generate a train set and test set from DataFrame？	statsmodels/statsmodels	count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing pandas-integration prediction python regression-models robust-estimation statistics timeseries-analysis wishlist	cloga
classification performance measures	statsmodels/statsmodels	comp-discrete count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	jseabold
model comparison notebook	statsmodels/statsmodels	FAQ comp-docs count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	jseabold
Add (pred_table) to appropriate GLM results	statsmodels/statsmodels	comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist	jseabold
fused function dispatch is slow for Python calls	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	robertwb
Implement "Beer–Lambert Law" support.	colour-science/colour	API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Implement support for "Mie Scattering".	colour-science/colour	API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Allow tuples/iterables as convenience for setting contraints on model parameters	astropy/astropy	Effort-low Feature-Request Package-novice astronomy astrophysics astropy modeling python science	embray
modify the appearance of the ACF PLOT function when using subplots	statsmodels/statsmodels	comp-graphics comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	aviPython
Add FIR filter examples to scipy.signal documentation	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.signal task	rgommers
ENH: More informative error message in fit_regularized Hessian inversion fail	statsmodels/statsmodels	count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	jseabold
pairwise_tukeyhsd - retrieve "reject" values	statsmodels/statsmodels	comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction prio-high python regression-models robust-estimation statistics timeseries-analysis type-enh	arnaldorusso
Reading and writing Excel spreadsheets in the unified table interface	astropy/astropy	Enhancement Package-novice astronomy astrophysics astropy python science table unified-io	hamogu
Add examples to docstrings	pvlib/pvlib-python	documentation easy help-wanted photovoltaic python renewable-energy renewables solar-energy testing	bmu
Add Kobayashi neuron model	NeuralEnsemble/PyNN	enhancement	apdavison
Implement support for "BFD (l:c) colour-difference" computations.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
ENH: weightstats CompareMeans add from_data and summary methods	statsmodels/statsmodels	comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	josef-pkt
Remove unused variational::base_family class	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan	bob-carpenter
Add API documentation for public class attributes	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	cscorley
Support retrieving the current value of state variables without recording	NeuralEnsemble/PyNN	enhancement	apdavison
Do we remember why utils.io.IOStream exists?	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	takluyver
ENH: Rewrite & cover with tests libcpp.string declarations	cython/cython	C++ Library big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	zyv
Implement support for "JCAMP-DX" and "CxF" xml file formats.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	Ron024
ipython Sphinx directive executes code when excluded by only, ifconfig	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	cgranade
Improve test coverage by moving self-tests	biopython/biopython	bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	peterjc
Add missing methods to Series	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy	mrocklin
array.to_hdf5(compute=False) doesn't return delayed value	dask/dask	array dask io numpy pandas pydata python scikit-learn scipy	nirizr
Treat subprocess errors as exceptions	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	minrk
test on pypy once pypy implements supported Python 3	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	minrk
add poisson_log_lcdf and poisson_log_lccdf functions	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan	davharris
feature request: redirect magic's result to pager	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	taoluo
Convergence information being displayed during ARIMA.fit() regardless of disp value	statsmodels/statsmodels	comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	philipobrien
Deprecate record.database_letters, record.query_letters	biopython/biopython	From-Redmine bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	vincentdavis
make 'snake' documentation clearer	bluesky/bluesky	bluesky dataacquisition documentation python	tacaswell
better linking from api docs to examples	bluesky/bluesky	bluesky dataacquisition documentation python	tacaswell
cythonize doesn't work with cython_compile_time_env	cython/cython	Build-System big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	sirfz
BleiCorpus after serialize cannot be loaded	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	vincentmajor
Documentation regarding input/output options	mosdef-hub/foyer	atom-typing disseminating-forcefields documentation force-field foyer molecular-dynamics molecular-simulation python	ctk3b
Error message while accessing a non-existent method of a class without gil can be improved.	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	MechCoder
DOC: Add "Examples" to docstrings	scipy/scipy	Documentation algorithms closember python scientific-computing scipy task	WarrenWeckesser
Dual Shapes for Convex Polyhedra	glotzerlab/coxeter	computational-geometry enhancement geometry physics polygons polyhedra shapes	bdice
MSA functions	simd-everywhere/simde	GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
LinearLSQFitter cannot fit compound models	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy modeling python science	jehturner
'ConcatenatedDoc2Vec' object has no attribute 'corpus_count'	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	jasminezz
Implement Asymmetric Laplace Distribution	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan	heroxbd
cygdb tests are failing	cython/cython	Debugger Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	lindsayad
FiniteAutomaton : declare a factory for intersection, etc.	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver	cprudhom
proper check for filename before calling subprocess	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	prakhar2b
bivariate normal cdf	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature new-function stan	bob-carpenter
minimal training time benchmark	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning performance planned python r tutorial	szilard
multiple functions from scipy.special do not work with quantities	astropy/astropy	Docs Effort-low Feature-Request Hacktoberfest Package-novice astronomy astrophysics astropy python science units	namurphy
Factor out the code that sorts snaked data by position.	bluesky/bluesky	bluesky dataacquisition maintenance python scan-spec	danielballan
Add random tests for custom equality	Martinsos/edlib	alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment	Martinsos
Add an est_time plan tool	bluesky/bluesky	bluesky dataacquisition enhancement hackathon python user-IO	danielballan
Create periodogram for Epoch folding	StingraySoftware/stingray	GSoC astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest low-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	matteobachetti
Improving computational time in LDASeqModel	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec	Diego999
Implementation of scipy.integrate.simps	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	Joshuaalbert
DOC: add additional gallery examples	geopandas/geopandas	documentation geoparquet geospatial pandas plotting python spatial	jorisvandenbossche
Check what's the reason to use double-precision in topic models	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec	menshikh-iv
[ENH] Color code progress bars for detectors and motors.	bluesky/bluesky	bluesky dataacquisition hackathon python user-IO	ambarb
Add a tests for our tests helpers	dask/dask	dask numpy pandas pydata python scikit-learn scipy	TomAugspurger
Implement support for CIELab2000HL.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Recommend a new default value of gravity.abs_tol	AMReX-Astro/Castro	adaptive-mesh-refinement amr astrophysical-simulation astrophysics castro cfd gravity help-wanted hydrodynamics pde radiation reactions study	maxpkatz
Add windows command line support to aligner	Martinsos/edlib	alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment	randrick
Function to check GFF	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Implement support for "CGATS" file format.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
List optional cytoolz dependency	dask/dask	dask numpy pandas pydata python scikit-learn scipy	jakirkham
How to contribute documentation to COBRApy?	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology docs enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python question sbml sbml-model sbml-simulation strain-engineering systems-biology	natJimenez
Cygdb not working with recent virtualenvs	cython/cython	Debugger big-data c cpp cpython cpython-extensions cython help-wanted performance python	BertrandBordage
Improvements of IntVar Views	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver	arnaud-m
deprecate int_step	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics bug documentation stan	bob-carpenter
sparse LU decomposition does solve with complex right-hand side	scipy/scipy	Documentation algorithms closember defect python scientific-computing scipy scipy.sparse.linalg	sebglane
Composition of Search Strategy with different limit	chocoteam/choco-solver	constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp help-wanted java solver	bourreauEric
Confusing "TypeError: '<' not supported between … 'str' and 'int'" when doc-tag not present for `most_similar()`	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	souveekbose
Properly document all kwargs for POCS class	panoptes/POCS	Documentation astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Model calculation is not able to read features from stdin	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	vpd
Add an 'event' command	bluesky/bluesky	bluesky dataacquisition python user-IO	danielballan
Hardware modifications log	panoptes/POCS	Enhancement astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Handle instrument calibration uncertainties for astrometry	sblunt/orbitize	enhancement	semaphoreP
Get horizon/obstructions from image	panoptes/POCS	Enhancement astronomy citizen-science exoplantes panoptes python scheduler telescopes	wtgee
Add column to name the file during `stats` sub-command	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
support ggplot style figures for stats command	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
Implement DESeq2 like normalization	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Account for field of view in horizon constraint	panoptes/POCS	astronomy citizen-science exoplantes panoptes python scheduler telescopes	wtgee
Function to parse queries and apply to the GFF file	miRTop/mirtop	formatter gff help-wanted internal isomirs mirna smallrna-seq	lpantano
Dataset Collection	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition	ynop
generate validation data from ROOT (based on validation/data/*.json)	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
CLI for ANN	mlpack/mlpack	c-binding c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request	arjunmenon
ENH/REF GLM simplify computation if is_canonical	statsmodels/statsmodels	comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh type-refactor	josef-pkt
Pythran fallback not used for numpy call	cython/cython	Pythran big-data c cpp cpython cpython-extensions cython enhancement performance python	serge-sans-paille
fill() method for DeviceNDArray	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	seibert
Python wrappers are not profiled separately when binding=True	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	mhsmith
Add tutorial on Dirichlet Process Mixture Models	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	fritzo
Coercing a sliced C array to Python should create a list	cython/cython	Cython-Language-Feature Type-Analysis big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
Use scipy.stats functions for defining distributions	lanl/PyBNF	enhancement low-priority	ryants
Implement support for "A Perception-based Color Space for Illumination-invariant Image Processing".	colour-science/colour	API Feature Good-First-Issue Help-Wanted P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	TFiFiE
Add stats output to multiqc	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
Cannot load codemirror mode dynamically	vatlab/sos-notebook	enhancement help-wanted jupyter-kernels	BoPeng
Improve documentation	dicompyler/dicompyler-core	dicom dicom-rt dvh hacktoberfest help-wanted python radiation-oncology radiation-physics	bastula
Speed up f-string float formatting	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
measures param for grid search and cross_validate should support callables	NicolasHug/Surprise	enhancement factorization machine-learning matrix recommendation recommender svd systems	NicolasHug
using gnulib instead of some compatibility hacks	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
EXECUTE: support for the third argument (quiet execution)	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
implement CDF_* routines using NASA CDF lib	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
ADD JSON_PARSE	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot priority! programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Add support for saving and restoring procedures	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python save-files scientific-computing scientific-visualization	slayoo
Testsuite change from procedures to functions	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
test_resolve_routine fails (first of all, it fails with IDL)	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	opoplawski
Slice by 0-dimensional np.array	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	crusaderky
reimplement MEMORY (at least for 64-bit Linux) using wait() calls	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
input conversion reading string (or files?) with windows-style line ends ("\r\n")	gnudatalanguage/gdl	antlr astronomy bug c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
TRIRED	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
Speed up method calls by avoiding bound method instantiation	cython/cython	Optimization big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
plot functionality	lanl/PyBNF	enhancement low-priority	ryants
Automaticly deduce cat_features from DataFrame	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	wingrime
Doc for objects that inherit from BaseCoordinateFrame is messy	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy coordinates python science	dstansby
Test all the Jupyter notebooks in the CI	scikit-hep/pyhf	asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
GAN Inference	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch question variational-inference	sameerkhurana10
Wrong parameter distributions from DREAM	lanl/PyBNF	bug	emitra17
Install hdf5 as external library with fortran and mpi	spack/spack	build-tools documentation hpc hpsf linux macos package-manager python radiuss scientific-computing spack	JohnWGrove
ENH: Add rsquared and variants to state space models	statsmodels/statsmodels	comp-tsa comp-tsa-statespace count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	ChadFulton
copy_from_remote_to_remote question	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/documentation topic/transports type/task workflow workflow-engine workflows	KimBenjaminTang
Small improvements to the LightSource class	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Radiative coupling and tunnel junctions	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Rigorous models for tunnel junctions	qpv-research-group/solcore5	Hacktoberfest enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Derived properties	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
linter "did you mean..."	conda-forge/conda-smithy	continuous-integration hacktoberfest linter	CJ-Wright
Add NumPy's kron for Dask Arrays	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	jakirkham
Make nicer display of non edit view of document	ropenscilabs/qcoder	enhancement help-wanted r r-package rstats shiny unconf unconf18	elinw
Dask Collections API compatibility	dask/dask	dask numpy pandas pydata python scikit-learn scipy	TomAugspurger
Find bugs or unclear man pages in docs	miRTop/mirtop	formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
help with the header of sRNAbench	miRTop/mirtop	formatter gff isomirs mirna smallrna-seq	lpantano
Add to summary tab	ropenscilabs/qcoder	enhancement hacktoberfest r r-package rstats shiny unconf unconf18	elinw
integrate mirtop into #galaxy	miRTop/mirtop	enhancement formatter gff help-wanted isomirs mirna smallrna-seq	lpantano
PAML run method docstrings - return value	biopython/biopython	Documentation bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	peterjc
Benchmark ORC reader	dask/dask	dask dataframe io needs-info numpy pandas pydata python scikit-learn scipy	jcrist
Package/Installer for Windows	LiberTEM/LiberTEM	data-processing electron-microscopy help-wanted image-processing python windows	sk1p
Package/Installer for Mac OS X	LiberTEM/LiberTEM	data-processing electron-microscopy help-wanted image-processing python	sk1p
Clean up code: `.str().length()`	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan	syclik
Make sure that Map and TimeSeries are able to take file handlers and a filetype	sunpy/sunpy	Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest map python solar solar-physics sun sunpy timeseries	Cadair
Crash when bounds of prange() are Python objects	cython/cython	Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
Apply the same transformation to image and mask in elastic_transform ?	DLTK/DLTK	cnn data-science deep-learning deep-neural-networks dltk dltk-model-zoo enhancement help-wanted machine-learning medical medical-image-processing medical-imaging ml neural-network neural-networks neuroimaging python tensorflow	Jing-He
Refactor parsing of time formats to use astropy custom formats	sunpy/sunpy	Effort-High Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest python solar solar-physics sun sunpy time	vn-ki
Unit test for `get_phase_lag` and `get_mean_phase_difference` functions	StingraySoftware/stingray	astronomy astrophysics blackhole blackholes data-analysis enhancement fourier-analysis fourier-transform hacktoberfest medium-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	swapsha96
Better user-facing messages on invalid IDs	kblin/ncbi-acc-download	enhancement help-wanted	areejalsheikh
DOC: avoid iteration for light travel time of lots of objects	astropy/astropy	Docs Effort-low Package-novice Performance astronomy astrophysics astropy python science time	StuartLittlefair
stdint compat for windows	cython/cython	Code-Generation Library big-data c cpp cpython cpython-extensions cython help-wanted performance python	jbrockmendel
Add unbounded pointer depth in pure Python 3.7+	cython/cython	big-data c cpp cpython cpython-extensions cython help-wanted performance python	kne42
Crash if certain non-ascii characters in model file.	lanl/PyBNF	minor	emitra17
Add documentation on cli commands (including piping)	scikit-hep/pyhf	asymptotic-formulas closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
a manpage for `envml` command	cea-hpc/modules	documentation environment environment-modules hacktoberfest hpc module modulefiles shell tcl	cmarqu
Special cases in iterable unpacking	cython/cython	Python-Semantics big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
multiple usage of same keyword (IDL --> duplicate keyword)	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Output file	symmy596/SurfinPy	density-functional-theory thermodynamic-properties	symmy596
Move pointing logic out of state	panoptes/POCS	State-Machine astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Least squares fit to speed up sampler	sblunt/orbitize	enhancement help-wanted	sblunt
when ~ncores=1, Parmap should not fork	rdicosmo/parmap	Good-first-issue enhancement	UnixJunkie
Test all public methods of classes (mainly pdf.Model)	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
DOC: Generating docs doesn't work if path has whitespaces	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
Document the container types	numba/numba	compiler cuda doc easy feature_request llvm numba numpy parallel python	stuartarchibald
Print what files you created when using -v mode	kblin/ncbi-acc-download	enhancement help-wanted	tseemann
Make sure testing is covering entire state machine	panoptes/POCS	State-Machine Testing astronomy bug citizen-science exoplantes panoptes python telescopes	wtgee
Improve code coverage	ropensci/jstor	hacktoberfest help-wanted jstor peer-reviewed r r-package rstats text-analysis text-mining	tklebel
generate quality circuit diagrams	ECSHackWeek/impedance.py	ECS-Hack-Week battery corrosion electrochemistry fuel-cell impedance lithium-ion	mdmurbach
Check data types for SONATA export	NeuralEnsemble/PyNN	sonata	apdavison
Handle spatial information when importing SONATA networks	NeuralEnsemble/PyNN	sonata	apdavison
Wrap coordinates into fractional coordinates	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Standardise our docstring convention on Time inputs	sunpy/sunpy	Effort-Medium Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest python solar solar-physics sun sunpy	Cadair
Explanations within the examples	qpv-research-group/solcore5	hacktoberfest help-wanted photovoltaic python semiconductor solar-cells	dalonsoa
Feature Request: GPUOptions for Go binding	tensorflow/tensorflow	deep-learning deep-neural-networks distributed machine-learning ml neural-network python statcontribution-welcome tensorflow typefeature	mattn
pandas.cut: the 'include_lowest' argument isn't behaving as documented	pandas-dev/pandas	Docs alignment cut data-analysis data-science flexible pandas python	evarga
[FR] Error messages should be more specific	pyro-ppl/pyro	bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference warnings-&-errors	fritzo
Call for User-Contributed Examples and Tutorials!	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning documentation help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	martinjankowiak
Exposing mu to the services (stepsize warmup)	stan-dev/stan	algorithm bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan	Tuxonomics
IPython directive should strip ansi escape sequence from output.	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	Carreau
Add tests for code2 and code4 validation (with additional checks on code4's alpha0)	scikit-hep/pyhf	asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Lint error on python version constraint no-noarch	conda-forge/conda-smithy	continuous-integration hacktoberfest linter	CJ-Wright
Support `numpy.tile`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Set `DATAPATH` for tests	healpy/healpy	Good-first-issue	zonca
SOBEL & clang : many complains; tests mising for SOBEL, PREWITT & ROBERTS	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Document NUMBA_CACHE_DIR	numba/numba	Task caching compiler cuda doc llvm numba numpy parallel python	sklam
Target Field names cannot be all numbers	panoptes/POCS	astronomy bug citizen-science exoplantes panoptes python telescopes	wtgee
Allow user to choose parser in get_spec and get_metadata	ropensci/lightr	Type-enhancement file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Add more options to the dictionary	ropenscilabs/gendercoder	enhancement gender-diversity help-wanted ozunconf18 r r-package rstats unconf	ekothe
Implement Support for "Hermite EETF" as per "BT.2390-4".	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	sobotka
Cache constant frozen-sets	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython performance python	scoder
SBML timeout not supported if PyBNF installed through PyPI	lanl/PyBNF	enhancement	emitra17
Add option for auto None & nan imputation for categorical features	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	chanansh
Post an issue	andyphilips/dynamac	ardl r stata time-series time-series-analysis	andyphilips
Work towards mocking all the online tests in SunPy	sunpy/sunpy	Effort-Medium Good-First-Issue Package-Novice Priority-Medium Tests astronomy astropy hacktoberfest python solar solar-physics sun sunpy	Cadair
Fix remote modules' PyPI documentation long description	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
silence warnings PDBConstructionWarning in test_PDB_StructureAlignment.py	biopython/biopython	Testing bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	peterjc
Batching Gaussian Processes	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	mileslucas
Include tutorial and docs for `datetime` time format	IAMconsortium/pyam	analysis datetime energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	danielhuppmann
Add boundary optimized operators of Mattsson, Almquist, and van der Weide	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
[Docs?] Numba creates multiple Python objects for an object returned more than once	numba/numba	compiler cuda doc easy llvm numba numpy parallel python	asodeur
Benchmark scattering mask data vs transmitting pickled mask factories	LiberTEM/LiberTEM	data-processing electron-microscopy enhancement future image-processing python	uellue
GPU modules are listed as available even if `ITK_USE_GPU` is `OFF`	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	fbudin69500
plot_mesh.py is undocumented in Wiki and might not show plot	PrincetonUniversity/athena	bug documentation visualization	felker
Add warnings about "obviously unintended" code	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython feature help-wanted performance python	scoder
Intuitively manage column-wise WCS coordinates	astropy/astropy	Docs Effort-low Package-novice astronomy astrophysics astropy coordinates io.fits python science wcs	matteobachetti
Implement copy_to_host() for negative strided array	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	sklam
Document LabelObject perimeter computations	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	blowekamp
Wild Bootstrap	lanl/PyBNF	enhancement	emitra17
convolve_fft defaults and documentation	astropy/astropy	Docs Feature-Request Hacktoberfest astronomy astrophysics astropy convolution python science	astromark
Overload the stream insertion operator for types that are missing it	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure	jhlegarreta
Parse strings as multi-element data structures in tests	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure	jhlegarreta
Add documentation for class attributes to docstrings	duetosymmetry/qnm	black-holes general-relativity numerical-methods physics python scientific-computing	duetosymmetry
Regressing out genes	scverse/scanpy	Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	joshuahwu
Raise Warning if the Capacity Array is Not Set But `mapc2p` is	clawpack/pyclaw	feature finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno	mandli
Speed up relative re-imports into absolute imports	cython/cython	Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	scoder
Uninitialized member variables	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeBug	jhlegarreta
Add support for `np.matmul`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Bad error messages in ClassifierChain on multioutput multiclass	scikit-learn/scikit-learn	data-analysis data-science machine-learning modulemultioutput python statistics	amueller
Embedded signature doc behavior for classes different from regular Python	cython/cython	Cython-Language-Feature big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python	david-cortes
"cannot determine Numba type" when calling AOT-compiled function from AOT-compiled function	numba/numba	AOT bug compiler cuda doc llvm numba numpy parallel python	nmgeek
Cythonize/Cython compilation fails to import/recognize `.pxd` from external modules that only have `__init__.so`	cython/cython	Build-System big-data c cpp cpython cpython-extensions cython enhancement performance python	ghost
Inconsistent behaviour when assigning to series?	pandas-dev/pandas	Indexing Needs-Tests alignment data-analysis data-science flexible pandas python	mwiebusch78
jit all the functions which are slow	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation performance perihelion space-physics	shreyasbapat
oldmin/oldmax aren't handled properly	InsightSoftwareConsortium/ITK	Good-first-issue areaIO cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement	tashrifbillah
Add quantitative tests to `itk::FastMarchingImageFilterBase`.	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage	jhlegarreta
Add support for NumPy `insert`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
cache files should be aware of EXOSIMS version	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Reword documentation	lucydot/effmass	documentation	lucydot
Fix Link	lucydot/effmass	documentation	lucydot
deduplication of louvain and leiden doc	scverse/scanpy	Area---Documentation-📒 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	fbnrst
Random seed should be encoded as a random generator object in SimulatedUniverse	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Warning spam from pybnf dependencies	lanl/PyBNF		emitra17
Make `UpdateRequiredITKVersionInFiles.sh` fetch files automatically	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	jhlegarreta
error while saving geodataframe as mapinfo .tab file	geopandas/geopandas	geoparquet geospatial pandas python spatial	ghost
numpy isin	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	machineko
Inconsistency in finding blocked reactions	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology flux metabolic-models metabolic-network metabolism modeling needs-information python sbml sbml-model sbml-simulation strain-engineering systems-biology	hvdinh16
potential Doc2Vec feature: reverse inference, to synthesize doc/summary words	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling wishlist word-embeddings word-similarity word2vec	gojomo
dagp_plot is not scaleable	flyaflya/causact	bayesian-inference dags enhancement help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package	flyaflya
Make meaningfulLabels = FALSE argument work in dag_greta()	flyaflya/causact	bayesian-inference dags help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package	flyaflya
Recipe documentation	mosdef-hub/mbuild	Recipes documentation enhancement maintenance mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Standardize documentation in `Utilities` scripts	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Add version changed for API changes	astropy/astropy	Docs Hacktoberfest Package-novice astronomy astrophysics astropy python science	taldcroft
Breaking change: allow input decks to work for both 2D and 3D	ECP-WarpX/WarpX	gpu hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Consider pipx as recommended installation method	scikit-hep/pyhf	asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Linter should hint about wrapping text	conda-forge/conda-smithy	Hacktoberfest continuous-integration enhancement hacktoberfest help-wanted linter	isuruf
Systematic breakdown table	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Importing Keras when loading dataset	mirapy-org/mirapy	astronomy autoencoder bug classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	swapsha96
Clean up clang macros	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCompiler typeStyle	dzenanz
Document how to get complete document distribution from LDA	RaRe-Technologies/gensim	Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	Antupis
meta-issue: All NumPy functions with no implementation	numba/numba	compiler cuda easy feature_request good-second-issue llvm numba numpy parallel python	stuartarchibald
look at merge cycler and make sure it works with any combination of pseudo-axis	bluesky/bluesky	bluesky dataacquisition hackathon python	awalter-bnl
Add references to docstrings	hoechenberger/questplus	doc enhancement psychology psychophysics	hoechenberger
Normalization edge case	lanl/PyBNF		emitra17
Finish GUI integration	lanl/PyBNF	enhancement	emitra17
Moving from autograd to jax	mirapy-org/mirapy	astronomy autoencoder classification curve-fitting deep-learning enhancement htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	ericmjl
Test coverage of special parameterizations	netsiphd/netrd	enhancement	sdmccabe
Installation instructions should ensure that the terminal preferred encoding is UTF8	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows	giovannipizzi
Test delve on Keras linear regression problem	delve-team/delve	convolutional-neural-networks deep-learning layer-saturation model-training neural-dynamics pruning pytorch training-monitor visualization	JustinShenk
Testing trained models life VGG, Inception etc with HTRU1 dataset	mirapy-org/mirapy	astronomy autoencoder classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries	swapsha96
Flattening Dask Arrays without spreading out chunks	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	jakirkham
Address Todo items in AzimuthElevationToCartesianTransform	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDesign	hjmjohnson
Consider adding __repr__ methods to all classes	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Add predict_proba for CatBoostClassifier in Java API	catboost/catboost	JVM-Applier big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	ancasarb
Upgrade poor handling of missionSchedule in init_OB	dsavransky/EXOSIMS	enhancement help-wanted	deanthedream
Remove similar code for command-line argument handling	idaholab/moose	Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
ONNX export doesn't support categorical features	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	wboleksii
bug in gensim.summarization.mz_entropy.mz_keywords	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	bbaranow
Use type hints with single dispatch in time	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy time	Cadair
Improve PythonUnitTest test separation option	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Improve ApplyScriptToRemotes.sh script's robustness	InsightSoftwareConsortium/ITK	Good-first-issue areaRemotes cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	jhlegarreta
Provide a way to enable both quantity_support and time_support in one go	astropy/astropy	Enhancement astronomy astrophysics astropy python science visualization	astrofrog
WordEmbeddingsKeyedVectors.add() doesn't clear `vectors_norm`, causing `IndexError` on later `most_similar()`	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-MEDIUM information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	gojomo
lsmagic returns JSON which makes for awkward UX in JupyterLab	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	fperez
Read more Line Databases (ExoMol, Chianti, NIST, GEISA, etc.)	radis/radis	astrophysics closember combustion databases enhancement exoplanets help-wanted hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 💡gsoc 🤔🤔.	erwanp
Implement mean for Series[datetime64[ns]] and DatetimeIndex	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy	TomAugspurger
Type highlighting in `inspect_types`	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Support numpy.isnan and numpy.isnat in cuda.jit kernels	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	kkraus14
Indexing on series where index is output from pd.cut	pandas-dev/pandas	Indexing Needs-Tests alignment data-analysis data-science flexible pandas python	kuchenrolle
Consistent style for references to external material	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy	wafels
WikiCorpus.filter_wiki/remove_markup don't remove heading-markup	RaRe-Technologies/gensim	Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim help-wanted impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	0x0badc0de
Specifying __bool__ and __nonzero__	cython/cython	Type-Analysis big-data c cpp cpython cpython-extensions cython enhancement performance python	rinslow
Documentation example doesn't work	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython performance python	realead
extend append() for updating existing data	IAMconsortium/pyam	analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
hasMaterialProperty depends on order in the input file	idaholab/moose	C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	tophmatthews
ImageDiff and Structrual Similarity	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
use array_like instead of numeric/array-like	pvlib/pvlib-python	documentation help-wanted photovoltaic python renewable-energy renewables solar-energy	wholmgren
AAVSO Light Curves	snad-space/ztf-viewer	enhancement	hombit
Create a list of reader/writer names	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager enhancement music noise speech speech-recognition	ynop
Fix PR02 issues in docstrings	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
DOC: Fix formatting errors in docstrings	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
add test for case-insensitive logic in DUStructDesc::AddTag	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
ElementGenerator test improvement	idaholab/moose	C-Framework C-Meshing Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Use SI units everywhere in the WarpX documentation	ECP-WarpX/WarpX	component-documentation gpu hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Various methods don't call call __finalize__	pandas-dev/pandas	Bug alignment data-analysis data-science flexible metadata pandas python	TomAugspurger
ENH: Improvements to new ARIMA-type estimators	statsmodels/statsmodels	comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh	ChadFulton
Consider astroalign for tracking corrections	panoptes/POCS	Enhancement astronomy citizen-science exoplantes mount panoptes python telescopes	wtgee
Bounds checking for shapes in GUI	LiberTEM/LiberTEM	GUI data-processing electron-microscopy image-processing python	uellue
Document reproducibility guarantees	lmcinnes/umap	0.4 dimensionality-reduction documentation machine-learning topological-data-analysis umap visualization	tomwhite
Storage class in MOOSEDocs should have a late initialization routine.	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Add aliases for common accessors	scikit-hep/pyhf	API asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch refactor scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Add coverage to pdf.Model.expected_auxdata and pdf.Model.mainlogpdf	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
ENH: Update `qcircuit` version for LaTeX circuit visualization and consider `Quantikz`	qutip/qutip	ENH Q&A code python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
Type Annotations	qpv-research-group/solcore5	enhancement hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Check urls of datasets in code and documentation	ynop/audiomate	audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition	ynop
Broken link to "Edit on Github" in ipython documentation	ipython/ipython	closember data-science documentation hacktoberfest ipython jupyter notebook python repl spec-0	btel
Add unit test for pattern.apply()	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	uppittu11
Park unless pointing withing threshold	panoptes/POCS	State-Machine astronomy citizen-science exoplantes panoptes python telescopes	wtgee
Add realistic spacecraft attitude motion	SISPO-developers/sispo	enhancement	YgabrielsY
word2vec doc-comment example of KeyedVectors usage broken	RaRe-Technologies/gensim	data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	gojomo
solution.Solution -- cannot pass `frame=` as kwarg	clawpack/pyclaw	Bug finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno	rjleveque
Implement .copy() for DeviceNDArray	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
Implement `.ravel()` on non-contiguous data	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
startingMonth ignored on non-unitary Quarter periods	pandas-dev/pandas	Frequency Needs-Tests Resample alignment data-analysis data-science flexible pandas python	aulemahal
Sum and difference bodies	glotzerlab/coxeter	computational-geometry enhancement geometry physics polygons polyhedra shapes	b-butler
Mass conversion (200c vs 200m)	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit	syasini
Add checks whether orekit is running properly	SISPO-developers/sispo	enhancement	YgabrielsY
add test for READ_CSV	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
Clean up warnings in doc build	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	TomAugspurger
Add AUX file parsing	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	abirchfield
Implement ColumnDescriptionClass	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	Noxoomo
fix: avoid scrambling of group members	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology	BenjaSanchez
reorder prior update and posterior updates for kalman	tbrown122387/pf	particle-filter statistical-methods statistical-models statistics	tbrown122387
Revise decorators to allow for docstring rendering	scikit-hep/pyhf	asymptotic-formulas bug closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
add call outs to all references in docstrings	pvlib/pvlib-python	documentation help-wanted photovoltaic python renewable-energy renewables solar-energy	wholmgren
xml2json recursively search for the root data file	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Unused parameter in mesh generators / --mesh-only does not cause warning or error	idaholab/moose	C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	YaqiWang
Suggestion for Catboost Tutorial	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	dennislamcv1
Move fast logger to wc_utils	KarrLab/de_sim	computational-modelling data-driven-model discrete-event-simulation enhancement object-oriented-programming python simulation	artgoldberg
multi-key shortcuts with different modifiers in each don't work	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgshortcuts tagKeyboard	amosbird
Check the language, clarity and consistency of documentation	adbar/htmldate	date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph up-for-grabs web-scraping webscraping	adbar
Test htmldate on further web pages and report bugs	adbar/htmldate	date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph up-for-grabs web-scraping webscraping	adbar
LONG TERM TODO LIST	radis/radis	astrophysics ci-dev closember combustion databases enhancement exoplanets help-wanted hitemp hitran infrared interface physics plasma plasma-physics radiation refactor spectra spectroscopy 😎. 🤔🤔.	erwanp
Add a simulator that estimates a plan's storage requirements.	bluesky/bluesky	bluesky dataacquisition hackathon python	danielballan
Support erfcx	google/jax	enhancement jax	cossio
Allow arbitrary units in Spectrum methods	radis/radis	astrophysics closember combustion exoplanets hitemp hitran infrared interface plasma plasma-physics post-process radiation spectra spectroscopy 😎.	erwanp
TestHarness should be able to start directory walking in another directory	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
refactor lumen.js	lumen-org/lumen	web-application	nandaloo
Improve test coverage	radis/radis	astrophysics ci-dev closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy	erwanp
collect_results! : path	JuliaDynamics/DrWatson.jl	hacktoberfest improvement project-assistant project-management science science-research setup-tool simulations	JonasIsensee
Inconsistent documentation of boxes	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis documentation hacktoberfest molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis	vyasr
CUDA: pinned_array_like, pinned_zeroes, pinned_ones, etc. would be handy	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	gmarkall
Add more extract providers	ropensci/osmextract	geo geofabrik-zone help-wanted open-data osm osm-pbf r rstats	Robinlovelace
How can I disable filename abbreviations in the results of tab-autocompletion?	ipython/ipython	closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl spec-0	cxrodgers
Unify files used in force field validation	mosdef-hub/foyer	atom-typing disseminating-forcefields force-field foyer molecular-dynamics molecular-simulation python testing	mattwthompson
Assigning to DeviceNDArray with Ellipsis fails	numba/numba	CUDA bug compiler cuda llvm numba numpy parallel python	jakirkham
Add more explicit warning when input file is a csv file without `sep = ","`	ropensci/lightr	Scope-UX/docs file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Potential lingering issues with XYZ files	mosdef-hub/mbuild	low-priority mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Suggestion : Run checkm on more than 1 MAG at a time	CAMI-challenge/CAMITAX	enhancement	michoug
Function of len() is invalid to dynamic share array	numba/numba	CUDA Task compiler cuda llvm numba numpy parallel python	mantouRobot
execute doctests in our continuous integration setup	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
hdf_open - error reporting	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf4 hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	slayoo
interacting with the file system using pathlib instead of os.path	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	JessicaS11
Add second order element capability to MeshGenerators	idaholab/moose	C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	dschwen
update and expand our automated testing functions	icesat2py/icepyx	closember community-driven hacktoberfest help-wanted icesat-2 python3	JessicaS11
Document How Links are Handled in Notebook	jupyterlab/jupyterlab	documentation help-wanted jupyter jupyterlab	saulshanabrook
Upstream longitude equality helper to astropy	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low Refactoring Upstream-Fix-Required astronomy astropy hacktoberfest python solar solar-physics sun sunpy	dstansby
Improve interface for AUX data	LiberTEM/LiberTEM	UX/DX data-processing design docs electron-microscopy image-processing python	uellue
DOCUMENTATION TODO LIST	radis/radis	astrophysics ci-dev closember combustion documentation exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 😎.	erwanp
Add documentation for get_diagnostics()	LiberTEM/LiberTEM	UX/DX data-processing electron-microscopy image-processing python	uellue
WASM SIMD implementations of SSE	simd-everywhere/simde	GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Not working on Lineage OS 15.1 / 16	TrackerControl/tracker-control-android	android privacy tracking-protection	kasnder
Accession range support?	kblin/ncbi-acc-download	enhancement help-wanted	peterjc
WEB: Multiple "Getting Started" on pandas.io leads to different links	pandas-dev/pandas	Web alignment data-analysis data-science flexible pandas python	mroeschke
Better empty state experience	LiberTEM/LiberTEM	GUI data-processing electron-microscopy image-processing python	sk1p
Instrument should be selectable rgb/monochrome	SISPO-developers/sispo		YgabrielsY
show total number of parameters (not only parsets) in pyhf inspect	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
Improve `dfply` test suite	zdelrosario/py_grama	enhancement uq	zdelrosario
Read configuration from log files	SISPO-developers/sispo		YgabrielsY
Find intermediate results	SISPO-developers/sispo		YgabrielsY
Tutorials/examples/documentation	mosdef-hub/mbuild	discussion documentation enhancement formatting mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	chrisiacovella
Sidebar toggle to show labels for all tips in tree	nextstrain/auspice	please-take-this-issue source-discussion-forum source-office-hours	jameshadfield
Update Level Set module to use vector variables	idaholab/moose	C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
AVX-512BW functions	simd-everywhere/simde	GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
downloaded file unzipping and sorting	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	JessicaS11
Improve autolink to files in MooseDocs	idaholab/moose	C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Support for Taqman / hydrolysis / multi-colour probes	ropensci/tidyqpcr	enhancement help-wanted miqe qpcr qpcr-analysis r r-package rstats tidyverse	ewallace
Improve name of InputParameters::registerBase	idaholab/moose	C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Create reduction mode straight from files instead of requiring user config sheet	arjunsavel/SImMER	astronomical-images astronomy astrophysics enhancement python stars	arjunsavel
"Remembering" the previous selection of a wide binary	arjunsavel/SImMER	astronomical-images astronomy astrophysics enhancement python stars	arjunsavel
Periodic wavelet collocation operators	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Improved Export/Download support	LiberTEM/LiberTEM	GUI data-processing electron-microscopy enhancement image-processing python	sk1p
Parallelism of calculations in pyhf ala joblib (or similar)	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Support running of unit tests from main run_tests	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Centralize all MooseDocs media into large_media	idaholab/moose	C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	aeslaughter
Upwind SBP operators of Mattsson (2017)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Change logo :)	MolMeDB/MolMeDB	cheminformatics chemistry database lipids membranes permeability small-molecule	KarelBerka
Issues with ingest	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	andrea-tango
PAGA connectivity score	scverse/scanpy	Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	rsggsr
Add Werror flag to Setup	cython/cython	Testing big-data c cpp cpython cpython-extensions cython help-wanted performance python	WillAyd
[Feature Req.] power spectrum function in py21cmfast	21cmfast/21cmFAST	context-python-wrapper type-feature-code	NGillet
Trimming links with length less than scene pixel resolution	jonschwenk/RivGraph	enhancement manuscript python	Lvulis
Document how to embed Cython modules in C/C++ applications	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
Automatic island filtering by island vs channel size.	jonschwenk/RivGraph	documentation enhancement manuscript python	Lvulis
Christoffel Symbols are no tensor!	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic	andi8086
pl.violin will not take "hue" kwarg for seaborn?	scverse/scanpy	Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	auesro
GUI: Selector handle behavior	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Better warnings for command line arguments that exist for compatibility	smithlabcode/falco		moldach
NaN returned during exchange maintenance	freqtrade/freqtrade	Enhancement Good-first-issue RPC algorithmic-trading bitcoin cryptocurrencies cryptocurrency freqtrade python telegram-bot trade trading-bot	sanket-k
Add Data Attribute for Cell Tags	jupyterlab/jupyterlab	enhancement help-wanted jupyter jupyterlab pkgcells	blink1073
DOC: Single Document For Code Guidelines	pandas-dev/pandas	Code-Style Docs alignment data-analysis data-science flexible pandas python	Stockfoot
Split filter() into two functions	tbrown122387/pf	enhancement particle-filter statistical-methods statistical-models statistics	tbrown122387
Add more compile time checks	tbrown122387/pf	enhancement help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
Implement support for various photoreceptor models.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Warn about unraisable exceptions where they occur	cython/cython	Error-Reporting big-data c cpp cpython cpython-extensions cython enhancement performance python	scoder
sc.pl.paga: TypeError: paga() got an unexpected keyword argument 'ncols'	scverse/scanpy	Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	YubinXie
Implement support for "oRGB: A Practical Opponent Color Space for Computer Graphics".	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Support target tags	panoptes/POCS	Enhancement Help-Wanted astronomy citizen-science config exoplantes panoptes python scheduler telescopes	wtgee
Need test coverage of all functions	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
deprecated parameter in tests file appears to be ignored	idaholab/moose	C-TestHarness Good-first-issue P-normal T-defect T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	bwspenc
Remove NOAA FidoClient and add SWPC client	sunpy/sunpy	Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest net python solar solar-physics sun sunpy	ehsteve
Make testing more robust especially for random objects	qutip/qutip	ENH Q&A help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
PDD solver: error in the documentation on how to access the output	qpv-research-group/solcore5	Documentation hacktoberfest photovoltaic python semiconductor solar-cells	dalonsoa
Check "truth" of CIF exporter	Materials-Consortia/optimade-python-tools	adapters openapi optimade optimade-api optimade-python optimade-specification priority/medium python tests	CasperWA
Usage with Shelter Sandbox	TrackerControl/tracker-control-android	android privacy tracking-protection	m37r
If you get "Segmentation fault", please read!	3fon3fonov/exostriker	bug enhancement exoplanet exoplanets help-wanted multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	3fon3fonov
Plotting for QUfitting and RMclean1d	CIRADA-Tools/RM-Tools	enhancement	Cameron-Van-Eck
Complete Implementation IfcFacetedBrep converter	tumcms/Open-Infra-Platform	IFC boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	hechth
Chain TrackerControl with other VPN services, such as ProtonVPN	TrackerControl/tracker-control-android	android privacy tracking-protection	famewolf
Feature suggestion: visually distinguish (color) cells with a tag	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgcelltags tagDesign-System-CSS	SultanOrazbayev
Missing Node.js error message unclear	jupyterlab/jupyterlab	documentation help-wanted jupyter jupyterlab	big-o
Calling host functions/operators from function with device annotation	parthenon-hpc-lab/parthenon	Kokkos amr bug help-wanted high-performance-computing kokkos parthenon	pgrete
var_context builder	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan	bob-carpenter
Tackle some low-hanging fruit in "test_grammar.py"	cython/cython	Parsing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
Zooming out from a labelled subtree does not correctly update the URL query	nextstrain/auspice	bug	jameshadfield
Consider adding plotly functionalities	qutip/qutip	ENH Q&A code help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nathanshammah
Adding get_memory_manager	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	jakirkham
lammpsdata box parameters	mosdef-hub/mbuild	bug mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	amorshedi
Implement "rich" output in console and logging	DeltaRCM/pyDeltaRCM	enhancement	amoodie
ValueError: cannot convert float NaN to integer	scverse/scanpy	anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	sygongcode
Delete or optimize reconstruction?	parthenon-hpc-lab/parthenon	amr discussion enhancement help-wanted high-performance-computing kokkos parthenon question	pgrete
Use of `IndexRange`s in `par_for` wrappers	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
automate PyPI/conda release using GitHub Actions.	econ-ark/HARK	Expertise-CI Expertise-Open-Source Priority-Low Tag-Installation economics help-wanted	MridulS
Dangerous default arguments in numba	numba/numba	bug compiler cuda llvm numba numpy parallel python	HPLegion
Refactor test suite	arjunsavel/SImMER	astronomical-images astronomy astrophysics python stars testing	arjunsavel
Save for review issues Yes/No answers and slider	pmkruyen/dearscholar	enhancement	Glenn437
BUG: groupby.sum() is inconsistent with df.sum() for large integers	pandas-dev/pandas	Bug Dtype-Conversions Groupby Needs-Tests Reduction-Operations alignment data-analysis data-science flexible pandas python	tom-weiss
Examples for CuPy and Numba.cuda	LiberTEM/LiberTEM	data-processing docs electron-microscopy image-processing python	uellue
Complete readme file	SCIInstitute/UncertainSCI	documentation	dcwhite
readthedocs: "Tutorials"	NathanSandford/Chem-I-Calc	documentation help-wanted	NathanSandford
Custom c++ metric Run Problem	catboost/catboost	big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial	gavrenkov
simplify and document code --- code review	gnudatalanguage/gdl	antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Warnings	snowformatics/macrobot	computer-vision enhancement image-analysis plant-pathogen-interactions python	snowformatics
NERSC Software Package	spack/spack	build-tools ecp feature hpc hpsf linux macos nersc package-manager python radiuss scientific-computing spack	shahzebsiddiqui
Adding markdown links to OpenAPI schema	Materials-Consortia/optimade-python-tools	OpenAPI docs openapi optimade optimade-api optimade-python optimade-specification priority/low python schema	CasperWA
Eliminate `get_providers` and put similar functions into `optimade.server.data`	Materials-Consortia/optimade-python-tools	enhancement openapi optimade optimade-api optimade-python optimade-specification priority/low python suggestions	CasperWA
Launch Binder button does not work.	vaexio/vaex	bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	adrienpacifico
Implement zoom and horizontal scrolling for sequence views	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add "scroll to top" button	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Better input TSV validation	open2c/cooler	3d-genome bioinformatics chromatin contact-matrix cooler enhancement file-format genomics hdf5 hi-c ngs python sparse	nvictus
Include csv result table in report	snowformatics/macrobot	computer-vision enhancement image-analysis plant-pathogen-interactions python	snowformatics
Implement persistent informational widgets	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Implement expandable rows ("row accordion")	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Implement sticky tooltips	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Link mutations to nextstrain.org	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add ability to cancel current task	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Using Python type hints	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch testing usability variational-inference warnings-&-errors	jpchen
custom logging level for numba internals.	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Investigate use of testbook for testing Jupyter notebooks	scikit-hep/pyhf	SciPy-Conference asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
Utility request: preprocessing step of Lancaster et al.	JuliaDynamics/TimeseriesSurrogates.jl	enhancement hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries	Datseris
Add marker showing current mouse position in sequences and gene map	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Attach gene map to the bottom-most sequence	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
[DOC] Add docstring for split_out and split_every in dask groupby-aggregate API	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	VibhuJawa
BUG: `len(df.groupby(..., dropna=False))` raises ValueError: Categorical categories cannot be null	pandas-dev/pandas	Bug Groupby Needs-Tests alignment data-analysis data-science flexible pandas python	ssche
Equality tests on floats: add support for math.isclose() and numpy.isclose()	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	alexandrehuat
Add support for extra NOAA JSON timeseries	sunpy/sunpy	Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy timeseries	nabobalis
Add status panel showing current filtering and sorting criteria and number of sequences displayed out of total	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add filtering and sorting reset button(s)	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Einasto Profile	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
Factorize NFW profiles	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
Add tSZ to Battaglia16	syasini/AstroPaint	astrophysical-signals cosmology enhancement halo-catalog python simulation-toolkit	syasini
Add more tests	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit test	syasini
Variable column width	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Add new coordinate and metric classes	einsteinpy/einsteinpy	coordinates enhancement general-relativity geodesics gravitational-physics hacktoberfest metric new-feature orbital-simulation perihelion research space-physics	JeS24
GUI: ROI selector bug	LiberTEM/LiberTEM	GUI bug data-processing electron-microscopy image-processing python	anandbaburajan
Wouldn't it be nice if we can visualize the results of `models` instead of just looking at the table?	shankarpandala/lazypredict	automl classification enhancement machine-learning regression	vidyap-xgboost
[FEATURE-REQUEST] Support netCDF-4 files	vaexio/vaex	bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	snitramodranoel
Check for extraneous tensor casts with "data" handling	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Paint qSZ using Line Integral Convolution	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog python simulation-toolkit	syasini
Adjoints of FEOperators	gridap/Gridap.jl	enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes	santiagobadia
Loading json schema via pkgutil	scikit-hep/pyhf	asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	alexander-held
Support zero-length arrays in numba.cuda	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	eric-wieser
change to standard NLL fit objective	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	lukasheinrich
BUG: read_sql no longer works simply with SqlAlchemy selectables and a quick fix	pandas-dev/pandas	IO-SQL Needs-Tests alignment data-analysis data-science flexible pandas python	machow
DOC: `.str.cat` output in case of `Index` object	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	galipremsagar
Evaluate PDE solution	gridap/Gridap.jl	enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes	jw3126
Update `examples` folder to include localization.	jupyterlab/jupyterlab	jupyter jupyterlab maintenance tagExamples	goanpeca
Audio Data Loading [FEATURE-REQUEST]	vaexio/vaex	bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	eladmw
Case sensitive input parsing	parthenon-hpc-lab/parthenon	amr documentation help-wanted high-performance-computing invalid kokkos parthenon question refactor	jdolence
cut mask (experiment footprint) based on input keyword	syasini/AstroPaint	astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit	syasini
column types not consistent in etox_targets()	ropensci/webchem	bug cas-number chemical-information chemspider consistent-api identifier r r-package ropensci rstats webscraping	Aariq
Catboost R package does not support calc_feature_statistics	catboost/catboost	R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	benshahararnon
Column count of a CSV may be wrong if more columns exist than the first line indicates	jupyterlab/jupyterlab	jupyter jupyterlab pkgcsvviewer	l2radamanthys
inconsistency in naming L5Pyr vs L5_pyramidal	jonescompneurolab/hnn-core	computational-modeling eeg maint meg neuron-simulator	jasmainak
Backend option in Compound.save()	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	rsdefever
Improve error message for NumPy alias type used as dtype in ArrayNdCtors	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	stuartarchibald
Check for L2 overflow	TeamCOMPAS/COMPAS	enhancement severity_minor urgency_low	ilyamandel
[REQUEST] Zoom to model	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement ifc infrastructure okstra point-cloud	pjanck
fix LCA_Database __repr__ so that `None` is not displayed	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
Best-Effort Callback assumes fields is non-empty	bluesky/bluesky	bluesky bug callbacks dataacquisition hackathon python	danielballan
add an 'x' button to close the error messages popup	plotly/dash	P3 bioinformatics charting dash data-science data-visualization feature finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	chriddyp
Use barycentric formula for Lagrange interpolation	SciML/DataInterpolations.jl		stevengj
cmfgen2tardis not working	tardis-sn/tardis	astrophysics bug-lady_beetle priority---medium python radiative-transfer science supernova	Knights-Templars
[Feature Req.] Ability to access all perturbed velocity components (also alternate line-of-sight direction)	21cmfast/21cmFAST	context-python-wrapper type-feature-code	BradGreig
`cmake` linting is not the same as the linting in the CI	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon	Yurlungur
Merge returns duplicate indices	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	tadej-redstone
Move BrownCorpus from word2vec to gensim.corpora	RaRe-Technologies/gensim	data-mining data-science document-similarity fasttext gensim housekeeping information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	piskvorky
Expose weights as parameter wherever relevant in the various Delta E computation definitions.	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
Expand Generators Module	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Support superquadrics in sdf actor	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Latex support	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Render video frames on a cube	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
GIF support	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Check how shaders affect antialiasing	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Add glow effects	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Add support for fast rotations	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature	Garyfallidis
Suggestions for documentation improvements	jump-dev/JuMP.jl	Status-Help-Wanted Type-Documentation conic-programs julia linear-programming mathematical-modelling mathematical-programming mixed-integer-programming modeling-language nonlinear-programming optimization semidefinite-programming	odow
Bash's B is misaligned with the other symbols in he launcher pad (and consider switching to the official Bash icon)	jupyterlab/jupyterlab	Design-System-CSS jupyter jupyterlab	joelostblom
COLORMAP_APPLICABLE	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	PaddyLeahy
Use `PetscRealPart` and `PetscImaginaryPart` in supermeshing.py	firedrakeproject/firedrake	complex	ReubenHill
Render code examples automatically with sphinx_gallery	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference website	eb8680
RF AnnexRepo: extend/unify init_remote and enable_remote	datalad/datalad	RIA/ORA closember data-storage dataset enhancement git-annex python usable	yarikoptic
Performance of _get_relevance()	DeepRank/deeprank	3d-cnn docking enhancement protein-protein-interaction pytorch	NicoRenaud
Cannot use automate_training on Compute Canada cluster	ivadomed/ivadomed		jcohenadad
Check how order parameters treat particles with zero neighbors	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis environment hacktoberfest molecular-dynamics monte-carlo-simulation order particle-system python science scientific-computing spatial-analysis	bdice
JSOCClient docs are out of date/innacurate	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest net python solar solar-physics sun sunpy	wtbarnes
CUDA: Add accessors for function attributes beyond just register use per thread	numba/numba	CUDA compiler cuda llvm numba numpy parallel python	gmarkall
Document (and smooth over any pain points in) interactive plots during acquisition in Jupyter	bluesky/bluesky	bluesky dataacquisition documentation hackathon python	danielballan
Better error message for `to_csv` with distributed worker and non-local filesystem	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	jsignell
XYZ writer improvements	mosdef-hub/mbuild	enhancement mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	rsdefever
f"Values {list(not_found)}, from {list(indexer)}, " "are not valid obs/ var names or indices."	scverse/scanpy	Bug-🐛 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	brianpenghe
Note --max-ppsize for large datasets in preprocess vignette	SchlossLab/mikropml	documentation machine-learning r-package rstats	kelly-sovacool
chopping chains in results class	sblunt/orbitize	enhancement	semaphoreP
Savename expand for nested structs is not working	JuliaDynamics/DrWatson.jl	bug hacktoberfest project-assistant project-management savename science science-research setup-tool simulations	sebastianpech
Better explain the groups param & batch effects in the intro vignette	SchlossLab/mikropml	documentation machine-learning r-package rstats	kelly-sovacool
TEOS-10 Accessor Improvement Suggestions	euroargodev/argopy	argo argo-core argo-data argo-floats enhancement help-wanted oceanography python stale	DocOtak
clust_wts does not exist in GDL	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Same script to compute and replot spectra	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared interface plasma plasma-physics radiation spectra spectroscopy	erwanp
Explore Alaska census data	ElectionDataAnalysis/electiondata	common-data-format election election-data	ericmtsai
make model runs end at the time specified.	DeltaRCM/pyDeltaRCM	enhancement	amoodie
Refactor SVI tutorial code from MD code blocks into code cells	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	ab-10
requesting ncols parameter in sc.pl.violin()	scverse/scanpy	Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	rpeys
Add an explicit Runge-Kutta method to applications	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
rendering a single/monolithic offlineable html file	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	dpark01
Deprecated GenericMap.measurement?	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	dstansby
Visualization of closure plots	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
Visualization of the ubox of unum Type I	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic	Ravenwater
Test US Senate contest totals wherever they exist	ElectionDataAnalysis/electiondata	common-data-format election election-data enhancement	sfsinger19103
Prevent tooltip content from going outside the screen	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priohigh research rna sars-cov-2 science sequences sequencing strain tbug tfeat virus	ivan-aksamentov
Add overflow values to the tests	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
Warn when no observables are present	lanl/PyBNF	enhancement	emitra17
add more hash manipulation utilities to sourmash CLI	sourmash-bio/sourmash	bioinformatics fracminhash good-next-issue hacktoberfest kmer minhash plugin_todo python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
Why do factorial approximations generate different values	stillwater-sc/universal	arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic numerical-investigation octa-precision posit-arithmetic quad-precision quarter-precision question rational-arithmetic	Ravenwater
Feature Request: Support ddof argument in np.nan[std | var]	numba/numba	compiler cuda feature_request llvm numba numpy parallel python	mroeschke
Add plotly/bokeh backend for plots	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared interface plasma plasma-physics radiation spectra spectroscopy	erwanp
[FEATURE] specify number of trees for shap	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	pseudotensor
Stork In Git Repo	idaholab/moose	C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	friedmud
Offset support in Wigner and other visualizations	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Krastanov
Dashline / dotted line actor	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation state-needs-PR typeNew-Feature	skoudoro
Taking too much time to run .	shankarpandala/lazypredict	automl classification help-wanted machine-learning regression	Vinitkumar89
Developer documentation lacks complete installation instructions	nextstrain/augur	bug documentation please-take-this-issue	huddlej
Clean up custom abundance input and documentation	tardis-sn/tardis	astrophysics documentation io model priority---medium python radiative-transfer science supernova	andrewfullard
Re-implement `%preview -r` with the new `sos server` mechanism.	vatlab/sos-notebook	enhancement jupyter-kernels	BoPeng
save chi2 values to results	sblunt/orbitize	enhancement long-term	semaphoreP
custom_metric parameter returns error when set for LazyClassifier	shankarpandala/lazypredict	automl bug classification machine-learning regression	praveenkumar-ravising
Automatically run tests from submodules	idaholab/moose	C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	tophmatthews
allow multi coefficient polynomials	MrMinimal64/multivar_horner	enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	jannikmi
`verdi calcjob cleanworkdir`: Add option for work chain	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/verdi type/feature-request workflow workflow-engine workflows	mbercx
Enhancement: Maximum confidence state distinguishability	vprusso/toqito	enhancement feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
Get all modules to pass parallel/distributed/threaded/recover tests	idaholab/moose	C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	loganharbour
Lazypredict package should check for dependencies at installation	shankarpandala/lazypredict	automl classification enhancement machine-learning regression	LaurentBerder
Update release-checklist and move into docs	gvilitechltd/LibSWIFFT	c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft	gvilitech
Migrate from markdown files to docs	gvilitechltd/LibSWIFFT	c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft	gvilitech
Add Calibration from Carroll 1997 QJE	econ-ark/HARK	Function-Calibration economics	Mv77
Handle missing prefixes more elegantly	CLARIAH/grlc	api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui	albertmeronyo
Handle metadata more elegantly	CLARIAH/grlc	api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui	albertmeronyo
STELLAR module: issues with output density	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	jbirky
[REF] All graphical unit tests needs updating	tumcms/Open-Infra-Platform	boost building-information-modelling example-files ifc infrastructure okstra point-cloud refactoring	pjanck
Bounds check for rectangular ROI	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Path input for file browser should be able to open a file directly	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy enhancement image-processing python	uellue
DOC: Reindexing behaviour of dataframe column-assignment missing	pandas-dev/pandas	Docs Indexing alignment data-analysis data-science flexible pandas python	fish-face
allow different polygons in `sc.pl.spatial`	scverse/scanpy	Area---Plotting-🌺 Area-–-Spatial-🗺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	giovp
DOC: add button to edit on GitHub	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	afeld
Progress bars with simulated hardware	bluesky/bluesky	bluesky dataacquisition hackathon python user-IO	danielballan
Inline example plots in docs	scverse/scanpy	Area---Documentation-📒 Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	ivirshup
Add Windows filesystem support	ml-evs/matador	bug computational-chemistry materials-science python	ml-evs
ENH:AttributeError: 'SeriesGroupBy' object has no attribute 'kurtosis'	pandas-dev/pandas	Enhancement Groupby alignment data-analysis data-science flexible pandas python	rsuhada
Add hint for MethodError on transpose/adjoint	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	timholy
[feature] implement locally spheroidal surface binding potential	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
reizql: META(filename=...) matcher	reizio/reiz.io	ast-matcher python-ast search-engine source source-code	isidentical
Make image licensing requirements clear	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	emmahodcroft
Add type hints (PEP-484)	SISPO-developers/sispo		YgabrielsY
Add bibtex style citation into readme	SISPO-developers/sispo		YgabrielsY
Add simplified install instructions to readme	SISPO-developers/sispo		YgabrielsY
Keep only typical config files + Standardise them	ivadomed/ivadomed	cardDESIGN_DISCUSSION documentation help-wanted	charleygros
[BUG] Spaces get removed from literal text when reading IFC	tumcms/Open-Infra-Platform	IFC boost bug building-information-modelling early-binding-generator ifc infrastructure okstra point-cloud	pjanck
Improving tutorials	pysal/spaghetti	enhancement gis graph-theory network-analysis notebooks pysal python spatial-network topology wishlist	jGaboardi
have code error out if metallicities exceed tabulated fsps metallcities	dnarayanan/powderday	enhancement	dnarayanan
dust masses for gizmo with OTF dust	dnarayanan/powderday	bug variable-extinction	dnarayanan
Confusing test failure display for KeySet	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	fonsp
Linear Scheduler Coefficients should be Named quantities in the JSON input	dsavransky/EXOSIMS	enhancement	dsavransky
DOC: Additional items for the cheat sheet	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	Dr-Irv
get rid of unused argument warning	tbrown122387/pf	enhancement help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
Possible conversion issues with large unit cells	Materials-Consortia/optimade-python-tools	adapters bug help-wanted openapi optimade optimade-api optimade-python optimade-specification priority/medium python	CasperWA
Stock price forecasting demo	traja-team/traja	animal-behavior enhancement python spatial-data-analysis time-series-analysis trajectory-analysis	JustinShenk
DOC: follow Google's developer documentation style guide	geopandas/geopandas	documentation geoparquet geospatial pandas python spatial	martinfleis
The result of an empty intersection of ranges is confusing	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	gbaraldi
Add type hints to entity grid	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Detect when trying to load an IDL sav file in the genx reader and redirect users to scipy.io.readsav	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest io python solar solar-physics sun sunpy	namurphy
Streamlit protobuf names may collide with those of other packages	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools machine-learning priorityP3 python statusconfirmed streamlit typebug	thiemoToadi
Implement `_repr_html_` on relevant classes	LiberTEM/LiberTEM	UX/DX data-processing electron-microscopy image-processing python	sk1p
Stencil neighborhood option doesn't support numpy.int64.	numba/numba	ParallelAccelerator compiler cuda llvm lowpriority numba numpy parallel python	DrTodd13
Advertisting: answer to open question about opening binary files	ropensci/lightr	file-import help-wanted r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy	Bisaloo
Implement Guiraud’s Index	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Implement a Hapax Legomena Index	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
write command-line test for `lca summarize --query-from-file`	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling testing	ctb
Document units in writer/reader functions	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Add type hints to givenness	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to lexico semantic norms	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to semantic_measures.py	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to surface_proxies	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
Add type hints to utils	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
NeighborList should be constructible from system-like object and 2D array of bond indices	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis hacktoberfest locality molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis	bdice
"emissivity_noslit" convolved by the slit "on the go"	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared interface plasma plasma-physics radiation spectra spectroscopy	CorentinGrimaldi
missing function comfit	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping mpfit netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Improve description of modifier inputs in docs	scikit-hep/pyhf	asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
Update all examples with new plotting methods from #1011	LiberTEM/LiberTEM	UX/DX data-processing docs electron-microscopy enhancement image-processing python	uellue
use Kubota & done as an option for AGN spectra	dnarayanan/powderday	enhancement	dnarayanan
Function documentation	ropenscilabs/qcoder	help-wanted r r-package rstats unconf unconf18	elinw
POISE should halt if rotational frequency is close to pericenter angular frequency	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Add output column headers to .forward files	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Read in input files only once	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Printing of output parameters should be limited to those that are requested	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Implement universal POS tags ratio	dpalmasan/TRUNAJOD2.0	coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio usability	dpalmasan
Allow user to supress reports of missing CandidateContests	ElectionDataAnalysis/electiondata	common-data-format election election-data enhancement user-convenience	sfsinger19103
Allow users to access the PNGs from the web GUI	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy enhancement image-processing python	uellue
`tag!()` always includes name of the last git tag with a message	JuliaDynamics/DrWatson.jl	hacktoberfest low-priority project-assistant project-management saving-files science science-research setup-tool simulations	imLew
Improve handling of PBC info from openbabel	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Improve box handling in pybel tests	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Fix boundingbox check for non-orthogonal boxes	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Improvements to coordinate_transform.py	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	jennyfothergill
Pkg.activate is not enough for forcing correct environment	JuliaDynamics/DrWatson.jl	hacktoberfest project-assistant project-management science science-research setup-tool simulations	fredrikekre
BUG: Spinner updates every 2 steps but advertises as 1 step	astropy/astropy	Bug Effort-low Package-novice astronomy astrophysics astropy python science utils	pllim
Create a way to read project data from a spread sheet	ropenscilabs/qcoder	r r-package rstats unconf unconf18	elinw
Interesting package: scclust	llrs/experDesign	batch cran experiment-design r r-package rstats	llrs
firstindex(enumerate(...)) not defined	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jamblejoe
Automatic linestrength cutoff	radis/radis	astrophysics closember combustion enhancement exoplanets hitemp hitran infrared physics plasma plasma-physics radiation spectra spectroscopy 💡gsoc	erwanp
Minimum cell cutoff in sc.pl.dotplot	scverse/scanpy	Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	gokceneraslan
Remove the restriction that metric tensor can only be 'uu' or 'll'	einsteinpy/einsteinpy	enhancement general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic tensor	WenyinWei
Smarter error messages from the filtertransformer	Materials-Consortia/optimade-python-tools	enhancement ergonomics openapi optimade optimade-api optimade-python optimade-specification priority/low python server transformers	ml-evs
Initial ice sheets heights shouldn't be negative!	VirtualPlanetaryLaboratory/vplanet	astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides	RoryBarnes
Make use of rhandsontable's read only features	ropensci/dataspice	data dataset enhancement help-wanted metadata r r-package rstats schema-org unconf unconf18	amoeba
use `world` instead of `usa` for default basemap	ropensci/rinat	inaturalist r r-package rstats spocc	stragu
Untested code in Nodes.py	cython/cython	Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python	scoder
matplotlib eventplot not shows all the binary data for big number of events	matplotlib/matplotlib	Difficulty-Hard Good-first-issue backend-agg data-science data-visualization gtk matplotlib plotting python qt tk wx	lorenzgutierrez
correlation between celltypes and age	scverse/scanpy	Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	FADHLyemen
Add optimized implementations to WASM SIMD128	simd-everywhere/simde	GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Improve response_fields and sort query parameter regexes	Materials-Consortia/optimade-python-tools	ergonomics models openapi optimade optimade-api optimade-python optimade-specification priority/low python schema suggestions	ml-evs
Add random walks to rustworkx	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	nahumsa
Pass detrended_flux and detrended_flux_err directly to constructor	ekaterinailin/AltaiPony	enhancement	ekaterinailin
[ENH] Pythonise the documentation!	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python	scoder
Support secure DNS	TrackerControl/tracker-control-android	android help-wanted privacy tracking-protection	laurentlbm
Add Colab notebook with examples running on GPU	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo probabilistic-programming sampling-methods	rlouf
Huge data use: Traffic wrongly attributed to TC	TrackerControl/tracker-control-android	android privacy tracking-protection wontfix	ThatIsAPseudo
Calculating Time Resolution	pysat/pysat	cubesat electric-fields enhancement ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science thermosphere	rstoneback
Allow data w missing modalities upon request	ivadomed/ivadomed	feature help-wanted	charleygros
When too many tabs are open in a supanel they overflow	jupyterlab/jupyterlab	jupyter jupyterlab pkgui-components tagDesign-System-CSS	krassowski
Improve list of papers using TARDIS	tardis-sn/tardis	astrophysics documentation python radiative-transfer science supernova	isaacgsmith
ChainRules usage isn't tested	SciML/DataInterpolations.jl		oxinabox
Implement Salience model for Entity Grid	dpalmasan/TRUNAJOD2.0	coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio	dpalmasan
PowerNorm should have a scale...	matplotlib/matplotlib	Good-first-issue Maintenance data-science data-visualization gtk matplotlib plotting python qt tk topic-collections-and-mappables topic-color/colorbar wx	jklymak
Document required vs. optional dependencies	mosdef-hub/mbuild	mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	mattwthompson
Dekel-Zhao Profile	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
Self interacting dark matter profile deflections	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
Hernquist Light Profile	Jammy2211/PyAutoLens	astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python	Jammy2211
[BUG] 0.29.22: sphinx warnings	cython/cython	Documentation big-data c cpp cpython cpython-extensions cython performance python	kloczek
doc_path must be unique	ropenscilabs/qcoder	r r-package rstats unconf unconf18	elinw
Warn users about about incompatibility with adblockers and Brave browser	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextclade_web research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Open tree in new tab without requiring new analysis	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	corneliusroemer
Warn users about memory consumption when they try to run on huge datasets	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	ivan-aksamentov
Document DYLD_FALLBACK_LIBRARY_PATH behavior from Big Sur on	spack/spack	bug build-tools documentation hpc hpsf impact-low linux macOS macos modules package-manager python radiuss scientific-computing spack	sethrj
Improve IAU/COSMO documentation in enmap.read_map	simonsobs/pixell	astrophysics cosmology documentation image-processing	zatkins2
Changing x/y/z axis position in a `Axis3`	JuliaPlots/Makie.jl	Axis3 Makie enhancement gpu graphics julia julia-language plotting visualization	Datseris
Add units to BlackBodySimpleSource	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	isaacgsmith
Population.freq and Population.size are returning the weighted hh count not person count	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
Documentation tests	LondonBiofoundry/basicsynbio	help-wanted	hainesm6
Gensim's FastText model reads in unsupported modes from Facebook's FastText	RaRe-Technologies/gensim	bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec	mpenkov
_sparse_nanmean is inefficient	scverse/scanpy	Area-–-Performance-🐌 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data	ivirshup
[REQUEST] Additional example	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud	pjanck
Explain the calculation of coherence limit in RB	Qiskit/qiskit-experiments	documentation qiskit	ShellyGarion
nice plotting functions?	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement kernel multiset-cca multiview pls pytorch tensor-cca	jameschapman19
FFTW Cleanup	ECP-WarpX/WarpX	backend-openmp component-spectral gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Setup Caching on Travis-CI	radis/radis	astrophysics ci-dev closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo	erwanp
Support jit decorator flags in cc.export (e.g. fastmath)	numba/numba	AOT compiler cuda feature_request llvm numba numpy parallel python	gmarkall
consistency between arguments in docstrings	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	jasmainak
Standardize actors colors (follow-up of #430)	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement	skoudoro
Merge implementations from "missing SSE implementations" to NEON	simd-everywhere/simde	accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
Relaxed SIMD support	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	nemequ
boxplot attributes aren't fully documented	JuliaPlots/Makie.jl	Attributes boxplot documentation gpu graphics julia julia-language plotting visualization	SimonDanisch
RMSPE Metric	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial	jonimatix
Clean tests	fAndreuzzi/BisPy	algorithms bisimulation graph-algorithms graph-theory hacktoberfest help-wanted python	fandreuz
add label alignment to tick_params	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-text topic-ticks-axis-labels wx	story645
Implement vectorized adaptive HMC	pyro-ppl/pyro	bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	eb8680
Migrate some examples to a public dataset	LiberTEM/LiberTEM	data-processing docs electron-microscopy image-processing python	uellue
Fix deprecation warning	jonschwenk/RivGraph	manuscript python	jonschwenk
BUG: `DataFrame.to_parquet` doesn't round-trip pyarrow StringDtype	pandas-dev/pandas	Docs IO-Parquet Strings alignment data-analysis data-science flexible pandas python	TomAugspurger
Replace os.path imports with custom helper	datalad/datalad	DX closember data-storage dataset easy git-annex python usable	adswa
Simplify the API	JuliaSmoothOptimizers/PDENLPModels.jl	enhancement	tmigot
Convergence plots do not show up	tardis-sn/tardis	astrophysics documentation python radiative-transfer science supernova visualization	atharva-2001
[ENH]: move .matplotlib folder from %USERPROFILE% on Windows	matplotlib/matplotlib	Good-first-issue OS-Microsoft data-science data-visualization gtk matplotlib plotting python qt tk wx	Erithax
Docs: 404	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows	m-a-saleh
rewrite git history to remove jupyter notebook outputs	undark-lab/swyft	enhancement help-wanted likelihood-free-inference machine-learning marginal-neural-ratio-estimation neural-ratio-estimation parameter-estimation python pytorch simulation-based-inference truncated-neural-ratio-estimation	bkmi
Switching MetaMorpheus and mzLib from AppVeyor/Jenkins to GitHub Actions?	smith-chem-wisc/MetaMorpheus	Maintenance calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	acesnik
Implement sorting on the backend	Merck/BioPhi	antibody enhancement help-wanted humanization humanness oasis sapiens	prihoda
Functions in Grama throughout are still missing documentation	zdelrosario/py_grama	enhancement uq	OscarDeGar
storing dict in .h5ad should raise warning when keys include '/'	scverse/anndata	Bug-🐛 anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics	MxMstrmn
Preprocessing for EZStat format	ECSHackWeek/impedance.py	battery corrosion electrochemistry enhancement fuel-cell impedance lithium-ion	xraymancs
Should sleep/retry a few times upon 'Network is unreachable'	datalad/datalad	DX closember data-storage dataset git-annex python tests usable	yarikoptic
[REQUEST] New example files OFF / XYZ / BIN	tumcms/Open-Infra-Platform	boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud	pjanck
Provide instructions on mounting OASis database through Docker	Merck/BioPhi	antibody documentation help-wanted humanization humanness oasis sapiens	prihoda
Add support for uncertainty with microscopy data	ivadomed/ivadomed		mariehbourget
Add user guide/examples/tutorials	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Allow indels in primer detection	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	mcroxen
[Docs] Add landscape images for 2d functions in documentation	sjvrijn/mf2	benchmark-functions benchmark-suite benchmarking-suite documentation multi-fidelity python	sjvrijn
Add CITATION.cff	LiberTEM/LiberTEM	UX/DX data-processing docs electron-microscopy enhancement image-processing infra python	uellue
replace `pytorch_testing_utils` with native PyTorch solution	pmeier/pystiche	Good-first-issue enhancement framework neural-style-transfer python pytorch	pmeier
Possible confusion between current GUI parameters and notebook download	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing notebooks python	uellue
[ENH] download and use horizon data to affect sky diffuse and far shading	pvlib/pvlib-python	enhancement help-wanted io photovoltaic python renewable-energy renewables solar-energy	mikofski
Implement CW_FIELD compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Implement CW_FORM compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
Implement CW_PDMENU compound widget procedure	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
[REQUEST] Add citation feature	tumcms/Open-Infra-Platform	boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life	pjanck
Make selecting color from a color map easier	JuliaPlots/Makie.jl	Makie User-Interface colors documentation enhancement gpu graphics julia julia-language plotting visualization	cmichelenstrofer
Use point set to shape mapping to improve polygon annotation widget	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
[REQUEST] Rework Contributors	tumcms/Open-Infra-Platform	boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life refactoring	pjanck
ENH: Rename noise keyword argument in redshifts_from_comoving_density function	skypyproject/skypy	astronomy astrophysics cosmology enhancement forward-modeling low-priority module-galaxies skypy	rrjbca
Navigation arrows between individual results	Merck/BioPhi	antibody enhancement humanization humanness oasis sapiens	prihoda
Add unit tests to explicitly test different combinations of data types	sblunt/orbitize	enhancement long-term	sblunt
extracellular times-recording unnecessary	jonescompneurolab/hnn-core	computational-modeling eeg meg neuron-simulator	cjayb
Add new layout methods	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
Expand graph operations	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	georgios-ts
Add more centrality measures	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	georgios-ts
Speed up code	ElectionDataAnalysis/electiondata	common-data-format election election-data technical-debt	sfsinger19103
Add support for biologic mpt files	jepegit/cellpy	battery chemistry data-analysis electrochemistry enhancement opensource physics	jepegit
Spack recipe out there?	parthenon-hpc-lab/parthenon	amr enhancement help-wanted high-performance-computing kokkos parthenon	kurtsansom
Deactivate filer icon (eye) missing for date range filters	nextstrain/auspice	enhancement	eharkins
Add option to disable GPUDirect RDMA	parthenon-hpc-lab/parthenon	amr enhancement help-wanted high-performance-computing kokkos parthenon	jlippuner
Add support for class labeling of bbox	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
Use more helpful package tools	Materials-Consortia/optimade-python-tools	CI enhancement ergonomics help-wanted needs-discussion openapi optimade optimade-api optimade-python optimade-specification priority/low python question security suggestions	CasperWA
Setting adata.filename = None doesn't load .X to memory	scverse/anndata	Bug-🐛 anndata bioinformatics data-science machine-learning pinned scanpy scverse topic-backed transcriptomics	Koncopd
can we add namespace when save_model in format cpp?	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial	nickhuangxinyu
add completion on fish shell for `ml` command	cea-hpc/modules	environment environment-modules hacktoberfest hpc module modulefiles shell tcl	xdelaruelle
add completion on zsh shell for `ml` command	cea-hpc/modules	environment environment-modules hacktoberfest hpc module modulefiles shell tcl	xdelaruelle
better code to pass all arguments of cmake function to `execute_process`	cea-hpc/modules	environment environment-modules hacktoberfest hpc module modulefiles shell tcl	xdelaruelle
Triply jagged branches	JuliaHEP/UnROOT.jl	cern-root future hacktober hep high-energy-physics julia particle-physics	aminnj
Improve image labeling for large number of classes	palaimon/ipyannotator	annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila	ibayer
%" pipe and "<-" assignment when using IRkernel in JupyterLab" >Add "%>%" pipe and "<-" assignment when using IRkernel in JupyterLab	jupyterlab/jupyterlab	enhancement jupyter jupyterlab	k-motwani
`num` test failures beyond bit-for-bit differences with intrinsic math	MESAHub/mesa	astronomy astrophysics binary-evolution fortran rainy-day stellar-astrophysics stellar-evolution	warrickball
Account for correlations in Gaia measurements	sblunt/orbitize	enhancement	sblunt
No error is showns when using meshblock/nx2=1 for 2D sims (and similar for 3D)	parthenon-hpc-lab/parthenon	amr bug high-performance-computing kokkos parthenon	pgrete
add deprecation warnings to results plotting methods	sblunt/orbitize	easy	sblunt
Add numerical tests for PeakStats	bluesky/bluesky	bluesky dataacquisition hackathon python	prjemian
Deprecate changing solar-{x,y} CTYPE	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	dstansby
Use ReadImage and WriteImage functions where appropriate	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle	dzenanz
Confusing, overlapping TestHarness Arguments should be cleaned up	idaholab/moose	C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Add Option To Always Print A TIMED_SECTION	idaholab/moose	C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	friedmud
shell mode: switch to pkg mode with ']'	JuliaLang/julia	REPL hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	timholy
Full support Of ROI (Regions of Interest)	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	SkippySky
Add parsers for all groups and classes	radis/radis	astrophysics closember combustion dbhitran exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo 😎.	dcmvdbekerom
Ensure doctests are not providing sole coverage for any code	scikit-hep/pyhf	asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests	matthewfeickert
plot instantaneous firing rate instead of histogram counts?	jonescompneurolab/hnn-core	computational-modeling eeg meg neuron-simulator	jasmainak
Add an option to stop the whole workflow for the first failed job	DataBiosphere/toil	aws common-workflow-language cwl gridengine intern kubernetes mesos pipeline python slurm wdl workflow workflow-description-language	adamnovak
Change formatting style for printed output	atomec-project/atoMEC	atomic-physics density-functional-theory electronic-structure plasma-physics warm-dense-matter	timcallow
Switch to using Typer over Click	scikit-hep/pyhf	CLI asymptotic-formulas build closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
create helper utilities for generating mean flow and demand files from previous runs	IMMM-SFA/mosartwmpy	enhancement	thurber
Updating "file formats" docs for additional clarity?	nanoporetech/megalodon	basecalling documentation epigenetics guppy variant-calling	lyijin
Migrate to importlib.resources files() (version 1.4 / Python 3.9) API	snek5000/snek5000	cfd closember fluiddyn fluidsim jinja2 long-term nek5000 python simulation snakemake snek5000 workflow	ashwinvis
Add METEOR metric	PyTorchLightning/metrics	New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch topic-Text	stancld
[BUG-REPORT] Issue converting object to string	vaexio/vaex	bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file priority-low pyarrow python tabular-data visualization	grafail
consolidate the describe / config caches in RunBundler	bluesky/bluesky	bluesky dataacquisition hackathon maintenance python	tacaswell
add page size checks for sync/async request mode	icesat2py/icepyx	IS2HW_2022 closember community-driven hacktoberfest icesat-2 python3	JessicaS11
[Tracker] Implement all `numpy.*` APIs in CuPy	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
`spack location --build-dir` inconsistency	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager python radiuss scientific-computing spack	albestro
Include an integer `setindex` for `NamedTuple`	JuliaLang/julia	collections hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	rafaqz
chunk_layer is memory-inefficient	aqlaboratory/openfold	alphafold2 enhancement help-wanted protein-structure pytorch	gahdritz
Instructions on how to use core Stan directly in C++	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics documentation stan	rok-cesnovar
More CI compiler versions	bcgsc/btllib	algorithms bioinformatics bloom-filter cpp data-structures enhancement genome library python	vlad0x00
Add an mBuild docs example of changing an existing box's dimensions and angles for the new mbuild.Box's structure.	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	bc118
GPU accelerated training not available during multitasking and model retraining	catboost/catboost	GPU big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	JHlozek
Allow setting the `title` property of the label surrounding the `RadioItem` and `Checklist` choices.	plotly/dash	P3 bioinformatics charting dash data-science data-visualization documentation feature finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	Viech
Extend Callback Interface	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	ayulockin
dashtable with pagination: tooltips appear in wrong place	plotly/dash	P3 bioinformatics bug charting dash dash-data-table data-science data-visualization finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	HeinerTholen
Update shell script outputs to match the CWL output format	sanctuuary/APE	automated-pipeline java program-synthesis workflow-synthesis	vedran-kasalica
[BUG-REPORT] str.replace(..., regex=True) : can't use capture group in repl str	vaexio/vaex	bigdata bug data-science dataframe enhancement hdf5 machine-learning machinelearning memory-mapped-file priority-medium pyarrow python tabular-data visualization	Binger-cn
Is "do_spin_temp" a valid parameter for run_coeval?	21cmfast/21cmFAST	context-python-wrapper priority-medium type-documentation	oscarhdz7
Add docs that show new features of the Results class	sblunt/orbitize	easy enhancement	semaphoreP
Test default default cases for strongly typed enum serialization	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage typeTesting	jhlegarreta
cleanup switch in hdf5_fun.cpp	gnudatalanguage/gdl	Low-priority antlr astronomy cleanup data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Issues with compiling SU2 on Windows 10	su2code/SU2	c-plus-plus cfd documentation enhancement flow fluid fluid-dynamics hpc opensource optimization physics python simulation	GabrieleMorvillo
Support more interpolation methods in `cupy.percentile` and `cupy.quantile`	cupy/cupy	contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	takagi
Reprs on formatters and locaters	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-ticks-axis-labels wx	story645
Document somewhere how to make a new release	atomec-project/atoMEC	atomic-physics density-functional-theory electronic-structure enhancement not-critical plasma-physics warm-dense-matter	DanielKotik
Representations for objects	mad-lab-fau/tpcp	algorithms biosignals data-management data-science help-wanted machine-learning python	AKuederle
Port NumPyro introductory examples to Pyro	pyro-ppl/pyro	Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	eb8680
Low-memory attention a little slow	aqlaboratory/openfold	alphafold2 enhancement help-wanted protein-structure pytorch	gahdritz
Add examples or better documents to use extendr in submodules	extendr/extendr	api-wrapper documentation extension ffi-bindings r rust	yutannihilation
Parser should provide useful warnings	lanl/singularity-eos	enhancement help-wanted	Yurlungur
Support build avatars sourced from non-GitHub URLs	nextstrain/auspice	enhancement	huddlej
MCMC burn in/number of steps tutorial	sblunt/orbitize	easy enhancement	sblunt
[REF] Paths Variable in ProfileConverter	tumcms/Open-Infra-Platform	boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	jschlenger
[REF] noexcept(false) in IfcGeometryConverter	tumcms/Open-Infra-Platform	boost building-information-modelling ifc infrastructure okstra point-cloud refactoring	jschlenger
Consider merging "Usage" and "Scripts" into a single documentation entry	ivadomed/ivadomed	documentation	jcohenadad
objectid takes arbitrarily long	JuliaLang/julia	Hacktoberfest hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific	cooijmanstim
Replace uses of tempname in CI by mktemp	JuliaLang/julia	ci hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	Keno
Contribute !	blackjax-devs/blackjax	bayesian-inference community hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Naming Convention for CI Tests	ECP-WarpX/WarpX	cleaning component-tests gpu hpsf laser particle-in-cell physics pic plasma research simulation	EZoni
glottomap: add option to show/hide NA	SietzeN/glottospace		SietzeN
missing keyword ELAPSED in SYSTIME()	gnudatalanguage/gdl	WIP antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
Remove whitespaces before scope resolution operators	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle	jhlegarreta
Optimizer classes should not print non-self member variables	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle	jhlegarreta
[Bug]: TwoSlopeNorm behaves like CenteredNorm	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-color/colorbar wx	MartenSkogh
Add test for on the fly event generation	nu-radio/NuRadioMC	enhancement neutrino radio simulation	shallmann
NameError/AttributeError suggestions in Python 3.10 error messages	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	tirkarthi
Feature request: Accept a URL to an input file	kanaverse/kana	bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly	slowkow
Address fixtures that are not being used	tardis-sn/tardis	astrophysics python radiative-transfer science supernova testing-vertical_traffic_light	atharva-2001
Request: Add build compiling with `c++17` to github actions.	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure	phcerdan
Better introduction to parametric types in the manual	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific types-and-dispatch	adigitoleo
Add equivalent of cycle_basis that returns an edge list	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
[Tracker] Implement all `scipy.*` APIs in CuPy	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Add missing parameters to the `nan` functions	cupy/cupy	catnumpy-compat contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	takagi
Implement reordering function to assess feature significance?	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca	JohannesWiesner
Comment option for CSVTable	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgcsvviewer	barronh
Cylinder actor needs to use repeat_primitives by default	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement	skoudoro
transpose a databox	lanl/spiner	enhancement help-wanted	Yurlungur
Separate random proposals and the RMH acceptance step	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
New method to fetch data along a given trajectory	euroargodev/argopy	argo argo-data argo-floats argo-traj enhancement oceanography python stale	gmaze
recreate DEM comparison notebook	icesat2py/icepyx	closember community-driven hacktoberfest icesat-2 python3	JessicaS11
Implement IO support for OpenEXR Layout by Fichet et al. (2021).	colour-science/colour	API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	KelSolaar
`" >Allow packing by `{"advected"}` rather than using an explicit `std::vector`	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Cleanup HDF5 ifdef logic for restart interfaces	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Bug: changing axis spine colors	JuliaPlots/Makie.jl	Attributes Axis MakieLayout bug gpu graphics julia julia-language plotting visualization	bensetterholm
Hide Contextual Help	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkginspector	CptTrips
Getting starting cells for parcels implicitly assumes that inlet is located along x=0 coordinate	DeltaRCM/pyDeltaRCM	help-wanted	amoodie
Antenna model list in the documentation needs updating	nu-radio/NuRadioMC	help-wanted neutrino radio simulation	shallmann
Provide more detailed information on failure to traverse an external link	HDFGroup/hdf5	Component---Documentation Good-First-Issue Priority---1.-High-🔼 Type---Improvement c cpp database fortran hdf hdf5 java library nosql	gheber
Lift from single Observable	JuliaPlots/Makie.jl	Makie Observables enhancement gpu graphics julia julia-language plotting visualization	fbanning
Define additional notations in Docs	JulianKarlBauer/mechkit	continuum-mechanics documentation help-wanted mechanics mechanics-of-materials python	JulianKarlBauer
Missing SVs	tjiangHIT/cuteSV	oxford-nanopore pacbio-data structural-variation	bnoyvert
`mesh` fails on quadrilateral mesh	JuliaPlots/Makie.jl	Makie conversions enhancement gpu graphics julia julia-language mesh plotting visualization	BambOoxX
Particle Histogram 2D	ECP-WarpX/WarpX	component-diagnostics gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
write deterministic resamplers and samplers	tbrown122387/pf	help-wanted particle-filter statistical-methods statistical-models statistics	tbrown122387
CSVY Parsers Should Be Incorporated to Model Readers	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	marxwillia
[ENH]: FancyArrow in 3D	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-arrow topic-mplot3d wx	patquem
Add "completely symmetric" fourth-order tensors to notation.ExplicitConverter	JulianKarlBauer/mechkit	continuum-mechanics enhancement mechanics mechanics-of-materials python	JulianKarlBauer
better calling convention for large numbers of arguments	JuliaLang/julia	compilercodegen compilerlatency hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	JeffBezanson
Export `DocumentSet` to bibtex	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
Export `DocumentSet` to RIS	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
Support WoS (Web of Science)	NLeSC/litstudy	bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews	stijnh
SBP coefficients of Albin & Klarmann (2016)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Type-checking of arguments in aggregation methods	IAMconsortium/pyam	analysis energy-systems iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	danielhuppmann
Output font size not changing for code cells	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils	wiraki
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found. (Ubuntu related?)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling unclear	3fon3fonov
[BUG-REPORT] Vaex `to_dask_array` fails `AttributeError: 'ValueError' object has no attribute 'numpy'`	vaexio/vaex	bigdata data-science dataframe hdf5 help-wanted machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization	Ben-Epstein
add missing_only=True to all imputers to use in combination with variables=None	feature-engine/feature_engine	data-science easy enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn	solegalli
Move CSVY writer from custom abundance widget to io	tardis-sn/tardis	astrophysics io python radiative-transfer science supernova	Rodot-
make paths in "File browser" editable?	jupyterlab/jupyterlab	enhancement help-wanted jupyter jupyterlab pkgfilebrowser	mathause
Repl session uuid	JuliaLang/julia	REPL feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
(link to) Radis-App Issues & Features	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 💡gsoc 😎.	erwanp
(link to) Radis-Lab Issues & Features	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared performance plasma plasma-physics radiation spectra spectroscopy 💡gsoc 😎.	anandxkumar
Within cluster DE test	scverse/scvi-tools	P2 cite-seq deep-generative-model deep-learning differential-expression enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	zoesteier
More concise error message with feature name, not only feature_idx	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	fingoldo
AstropyDepreciationWarning	riogroup/SORA	documentation effort_low	GianmarcoBroilo
Warn user if Nboot > Npermutations	privong/pymccorrelation	bootstrapping-statistics correlation-coefficient enhancement monte-carlo	privong
Extracting asc/descending tracks in high latitudes (regions 4 and 11)	icesat2py/icepyx	closember community-driven enhancement hacktoberfest icesat-2 python3	s2002365
conda-forge download statistics	icesat2py/icepyx	closember community-driven documentation hacktoberfest icesat-2 python3	JessicaS11
streamlit's webserver not working when using BAZEL for installation bug	streamlit/streamlit	areadeployment data-analysis data-science data-visualization deep-learning developer-tools machine-learning priorityP4 python statusunlikely streamlit typebug	rubenverhack
Enable Sky Projection for `plot_fit`	PetroFit/petrofit	Enhancement Good-First-Issue Visualization fitting galfit petrofit petrosian python sersic	robelgeda
Consistent treatment of `nan` in summary functions	zdelrosario/py_grama	enhancement uq	zdelrosario
Pascal, Hilbert and/or other special matrices in `jax.scipy.linalg`	google/jax	P3-(no-schedule) enhancement jax	pnkraemer
[Bug]: Large file size when using fill_between()	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tgrohens
MICADO Docs, show how to change Seeing with AnisoCADO PSF	AstarVienna/irdb	documentation help-wanted instrument-specific	AstarVienna
[Doc]: Arguments of FFMpegFileWriter not clear.	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-animation wx	baloe
Expand rustworkx-core testing	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	mtreinish
expand non_fitted_error_checks for methods get_feature_names_out and inverse transform	feature-engine/feature_engine	data-science enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn	solegalli
Reduce template parameters in `Swarm::AllocateBoundariesImpl_`	parthenon-hpc-lab/parthenon	C++17 amr high-performance-computing kokkos parthenon refactor	brryan
Add documentation on optimizing transfer performance	idaholab/moose	C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Add documentation for XDA/XDR format and/or link to existing documentation	idaholab/moose	C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Map remaining pymatgen/atomate sets and workflows	jacksund/simmate	enhancement	jacksund
STYLE replace flake8-rst with something maintained	pandas-dev/pandas	Code-Style alignment data-analysis data-science flexible pandas python	MarcoGorelli
Widgets code shows up during the commandline	tardis-sn/tardis	astrophysics bug-lady_beetle python radiative-transfer science supernova	wkerzendorf
option+letter on OSX with tkagg give non-alpha numeric rather than alt-	matplotlib/matplotlib	Difficulty-Medium GUI-MacOSX GUI-tk Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
`std::set` instead of `std::vector`?	parthenon-hpc-lab/parthenon	amr discussion high-performance-computing kokkos parthenon	Yurlungur
[FR] allow tuple of (lower, upper) for band	JuliaPlots/Makie.jl	Makie conversions gpu graphics julia julia-language plot plotting visualization	KronosTheLate
Add Yamazaki et al (2020) terrain-following interpolation algorithm	euroargodev/argopy	argo argo-data argo-floats argo-traj enhancement oceanography python stale	gmaze
[Tracker] Fix signature mismatch with NumPy/SciPy	cupy/cupy	catnumpy-compat contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Explicitly document the `missing` behavior for all functions that handle `missing` values	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	CameronBieganek
Limit max number of Simbad rows	snad-space/ztf-viewer	bug	hombit
Move more connected components functions to retworkx-core	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	enavarro51
Move tests to tests/ directory.	extendr/extendr	api-wrapper extension ffi-bindings r rust	andy-thomason
Favour explicit `extendr_api` calls to prelude.	extendr/extendr	api-wrapper extension ffi-bindings r rust	andy-thomason
`tardis/analysis.py` uses Pandas's deprecated `.ix` method	tardis-sn/tardis	astrophysics bug-lady_beetle python radiative-transfer science supernova	epassaro
Restructure Unit Tests	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Reduce Duplicate Code in Unit Tests	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Missing functions from DTLZ libraries	parmoo/parmoo	blackbox-optimization bug mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
Consolidate `NullIndexer` classes	lanl/singularity-eos	enhancement	jhp-lanl
A GUI for creating MOOPs	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization	thchang
FITS reading should emit a warning when memory mapping is explicitly requested but not successful	sunpy/sunpy	Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest io python solar solar-physics sun sunpy	ayshih
[Feature Request] Force users to select a default output directory rather than creating a 'VesselVio' directory on the desktop	JacobBumgarner/VesselVio	analysis enhancement open-source visualization	ElisabethKugler
Handle 7- and 9-parameter Hipparcos fits	sblunt/orbitize	enhancement help-wanted long-term	sblunt
improve error message in `set_meta_from_data()`	IAMconsortium/pyam	analysis energy-systems enhancement help-wanted iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
Writing tutorials	pymedphys/pymedphys	dicom help-wanted medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy	SimonBiggs
Write a downloader function for data	tardis-sn/carsus	astronomy atomic-database feature python	epassaro
Set notated input parameters not being recognized	DeltaRCM/pyDeltaRCM	documentation help-wanted	Lvulis
Add alpha-DPI as a backend in orbitize	sblunt/orbitize	enhancement	sblunt
2022.04.0: sphinx warnings `reference target not found`	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	kloczek
NOCT_SAM may not handle effective irradiance correctly	pvlib/pvlib-python	bug help-wanted photovoltaic python renewable-energy renewables solar-energy	adriesse
Create general tests for all EOS	lanl/singularity-eos	Testing	jhp-lanl
Update relevant tests to use `sort_results` argument	dask/dask	dask dataframe numpy pandas pydata python scikit-learn scipy tests	pavithraes
Sanitize EOS parameters	lanl/singularity-eos	enhancement	jhp-lanl
+ v basic robis example vignette	marinebon/obisindicators	biodiversity enhancement help-wanted marine marine-biology r	7yl4r
Granular device management for Jax	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning enhancement human-cell-atlas jax scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	justjhong
Implement multipathfinder	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo probabilistic-programming sampler sampling-methods	junpenglao
STY: usage of itertools	pysat/pysat	cubesat electric-fields ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science style thermosphere	jklenzing
For all Windows users, who use the "Windows Subsystem for Linux" (WSL), please read!!!	3fon3fonov/exostriker	exoplanet exoplanets multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	3fon3fonov
poisson_conf_interval 'kraft-burrows-nousek' fails unexpectedly	astropy/astropy	Bug Effort-low Package-novice astronomy astrophysics astropy python science stats	hamogu
Discuss `xlims!`, `ylims!`, and `limits!` in the Basic Tutorial?	JuliaPlots/Makie.jl	Axis Axis3 documentation gpu graphics julia julia-language plotting visualization	CameronBieganek
Standardize reporting known inconsistencies in `dask.dataframe` API	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	avriiil
Expand test coverage	openmopac/mopac	electronic-structure help-wanted molecular-orbital-theory quantum-chemistry semiempirical-methods	godotalgorithm
Use Artifact system to ship test .root files	JuliaHEP/UnROOT.jl	cern-root hacktober help-wanted hep high-energy-physics julia particle-physics	Moelf
Inconsistent rounding for parameters in savename	JuliaDynamics/DrWatson.jl	bug hacktoberfest project-assistant project-management science science-research setup-tool simulations	cumberworth
Add a pretty printer that returns information that is useful for the user	blackjax-devs/blackjax	bayesian-inference documentation enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Improve the documentation	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Refactor marginal_latent_gaussian.py so it is PyTree compatible	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo important probabilistic-programming refactoring sampling-methods	rlouf
PTofRE and DensityEnergyFromPressureTemperature should have consistent naming	lanl/singularity-eos	enhancement	jhp-lanl
User-defined random number generator	jmejia8/Metaheuristics.jl	constrained-optimization decision-making differential-evolution enhancement hypervolume multi-objective-optimization nsga2 optimization pso simulated-annealing	mohamed82008
inconsistency in FBA flavour invocations	opencobra/cobrapy	biochemistry bioinformatics cell-design cobra computational-biology enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology	lptolik
ENH: sparse matrix assigning should be optimized rather than using densified matrixes	scipy/scipy	algorithms closember enhancement python scientific-computing scipy scipy.sparse	likaiwen123
Add support for Atom Indices Import	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Suspend OGLE-III	snad-space/ztf-viewer	enhancement	pruzhinskaya
Fix PDBList access to servers other than RCSB	biopython/biopython	Bug bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Extend PDBList obsolete handling to mmCIF and mmtf formats as well as assemblies	biopython/biopython	Bug Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Update argument handling in PDBList.py, possibly by creating a new module.	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Access to Alphafold database of 3D modules in a PDBList-like interface	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Add example with non-ascii characters to demonstracte Unicode support	quantling/pyndl	documentation enhancement	derNarr
Implement remaining numpy functions	zdelrosario/py_grama	uq	zdelrosario
Utility to change model title	zdelrosario/py_grama	enhancement uq	zdelrosario
Polymer Builder issue	mosdef-hub/mbuild	low-priority mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	CalCraven
Energy Minimize	mosdef-hub/mbuild	documentation mbuild molecular-dynamics molecular-simulation molecule-builder mosdef python	CalCraven
How to pass compression level to_parquet, to_zarr [docs]	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	ncclementi
ValueErrors that should be TypeErrors	zdelrosario/py_grama	invalid uq	mstites
Add more viz plot types	parmoo/parmoo	blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization viz	HyrumDickinson
Filter for un-mutated bases	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	emmahodcroft
Add final extraction directory size and total file count to reports	SMI/SmiServices	priority/high type/enhancement	rkm
Handle MTPASA DUID Availability	UNSW-CEEM/NEMSEER	aemo australia energy enhancement forecast national-electricity-market nem nemweb pasa pre-dispatch python	prakaa
Dialog hangs if IBodyWidget.getValue() throws an error	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils tagExtensions	herjiict
Root finding bounds in Davis EOS	lanl/singularity-eos	enhancement	Yurlungur
Slow calculation time for IfcSine and IfcCosine	tumcms/Open-Infra-Platform	IFC boost building-information-modelling evaluation example-files ifc infrastructure okstra point-cloud quality_of_life	Elvira2227
Missing documentation / docstrings	zdelrosario/py_grama	enhancement uq	mstites
Code duplication within eval functionality & unittests	zdelrosario/py_grama	uq	mstites
Global Enhancements List	Jashcraf/poke	enhancement	Jashcraf
README budges.	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	mosheraboh
how to specify db-load-mode in precomputed_alignments_mmseqs.py	aqlaboratory/openfold	alphafold2 protein-structure pytorch	lzhangUT
Create fully pinned requirements file for bug-fix branches	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
Outlier filter for live plots	LiberTEM/LiberTEM	GUI UX/DX data-processing electron-microscopy image-processing python	uellue
Performance best practices docs page	parthenon-hpc-lab/parthenon	amr documentation help-wanted high-performance-computing kokkos parthenon	Yurlungur
Avoid logger info in CCDData.read when unit specifies matches that in FITS file	astropy/astropy	Feature-Request astronomy astrophysics astropy nddata python science	astrofrog
Replace custom deepdiff wrapper scripts with deepdiff CLI	nextstrain/augur	easy-problem enhancement	huddlej
Open/limit FileDialog.getExistingDirectory from a subdir of root	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgfilebrowser	suganya-sk
Bio.PDB.PSEA should use a temporary directory to run the third-party tool	biopython/biopython	Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
report sketch progress from `sketch fromfile`	sourmash-bio/sourmash	bioinformatics enhancement fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	bluegenes
pgstar Controls	MESAHub/mesa	astronomy astrophysics binary-evolution enhancement fortran stellar-astrophysics stellar-evolution	ericasaw
Drop the name of returning, only keep type for single returning method	siavash-saki/tesspy	documentation	Zeroto521
reduce the size of photosphere in the RPacketPlotter Plot	tardis-sn/tardis	astrophysics python radiative-transfer science supernova visualization	jayantbhakar
Editable pip install is not working correctly	multiscale/muscle3	documentation	maarten-ic
Is there a good way to issue a warning from a task?	dask/dask	dask enhancement numpy pandas pydata python scikit-learn scipy	ian-r-rose
Testing for Windows	UNSW-CEEM/NEMSEER	aemo australia energy forecast national-electricity-market nem nemweb pasa pre-dispatch python test	prakaa
Mismatch between documentation and REST API	containers/podman	Good-First-Issue HTTP-API containers docker documentation kind/bug kubernetes linux oci	benoitf
show users how to delete drives	jonescompneurolab/hnn-core	computational-modeling docs eeg meg neuron-simulator	jasmainak
Print Source Label in Segmentation Plot	PetroFit/petrofit	Enhancement Good-First-Issue fitting galfit petrofit petrosian python sersic	robelgeda
Cell type proportion per spot overrepresenting transcriptionally active cell types?	BayraktarLab/cell2location	question	mgrantpeters
Add new metric - example + doc	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	mosheraboh
Add an interactive event viewer	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	RasmusOrsoe
Auto-Update setup.py's release version upon github release	ianfhunter/GNOLL	Feature-Request Python board-game c code-quality cpp dice dice-notation dice-roller dice-rolls go golang haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Allow tables to correct hull energies	jacksund/simmate	enhancement	mctaggartdh
[Bug]: crash due to backend issue in ipython session started explicitly with InteractiveShell	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	zpincus
Thread for possible enhancements in future	TORCH-Consortium/MAGMA	enhancement genomics help-wanted mycobacterium-tuberculosis nextflow nextflow-pipeline pipeline tuberculosis wish-list	abhi18av
Add option to profile code modules and examples	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	MortenHolmRep
Test: d4!!	ianfhunter/GNOLL	Python Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Test: Symbolic Arithmetic	ianfhunter/GNOLL	Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
ENH: Output feature table for use during Genbank submission	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain package-nextalign package-nextclade research rna sars-cov-2 science sequences sequencing strain tfeat ttalk virus	corneliusroemer
ARIA labels on main area widget are incorrect (always referring to a notebook)	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgapputils tagAccessibility	krassowski
[ENH]: support PySide6's `snake_case`	matplotlib/matplotlib	Difficulty-Medium GUI-Qt Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	bersbersbers
Improve the ecological analysis method	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	mzy2240
Add CLI entrypoint that mimics the C++ app	parafields/parafields	enhancement hacktoberfest iwr-hacktoberfest	dokempf
Geometry.from_dxf can only ever import one shape	robbievanleeuwen/section-properties	computational-mechanics cross-section enhancement finite-element-analysis finite-element-method help-wanted python stress-analysis structural-engineering	mfeif
Add "How to distribute gradient computation?" document	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Add "How to run adaptation for several chains?" document	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Publish the doc for each PR individually	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
RFE: Add tracking/monitoring/events of what will/is currently performed by `kube play` command	containers/podman	Good-First-Issue containers docker kind/feature kube kubernetes linux oci podman-desktop	benoitf
`cupyx.scipy.sparse.block_diag` working with cupy sparse matrix on GPU	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	tagerjump
Sparse Eigensolver issue.	qutip/qutip	BUG medium python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Ericgig
Add weights for the pearson, spearman, and r2_score	PyTorchLightning/metrics	analyses data-science deep-learning enhancement machine-learning metrics python pytorch	DomInvivo
Power/Exponent	ianfhunter/GNOLL	Feature-Request board-game c core cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Labels for PatchCollection do not show	matplotlib/matplotlib	Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-collections-and-mappables topic-legend wx	Robotatron
Duplicate and non-existing Doxygen groups	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Make the `itkMultiLabelSTAPLEImageFilterTest` quantitative	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting	jhlegarreta
Save scientific work citations to a BibTeX file for ease of use in Doxygen	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Easy Means of Enabling Swap Memory on Podman Machine (MacOS, maybe others)	containers/podman	Good-First-Issue containers docker kind/feature kubernetes linux machine oci	jamesmikesell
Add validation of profile UUID to the `Profile` class and `verdi setup`	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/config topic/verdi type/enhancement workflow workflow-engine workflows	sphuber
Auto-Detect when changing params in `dataset_balanced_division_to_folds(reset_split=False)`	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	SagiPolaczek
[FR] allow orthogonal parameters in pyro.param	pyro-ppl/pyro	bayesian bayesian-inference deep-learning discussion enhancement low-priority machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference	martinjankowiak
list available EdgeStats in docs	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
Store distance from on-axis when calculated in BaseSource init	DavidT3/XGA	astronomy astrophysics enhancement galaxy-clusters heasoft sas x-ray x-ray-astronomy xga xmm xmm-observations xmm-science-analysis xspec	DavidT3
[ENH]: Add default kwargs values if figure.suptitle(t, **kwargs) to rcParams and inherit from there.	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-rcparams topic-ticks-axis-labels wx	frank-klein-schaarsberg-wb
create documentation project on Read the Docs	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning documentation enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	SagiPolaczek
Remove support for "installing" Parthenon as a library	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon refactor	pgrete
Add a "How to use forward-mode differentiation instead of backward-mode differentiation" tutorial	blackjax-devs/blackjax	bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Replace profile.create_profile with verde.profile_coordinates	mdtanker/polartoolkit	antarctica arctic bedmachine bedmap cryosphere enhancement gmt greenland jupyter-notebook plotting polar profiles pygmt python	mdtanker
DOCS: make example project CamelCase instead of it having space in its name	JuliaDynamics/DrWatson.jl	documentation hacktoberfest project-assistant project-management science science-research setup-tool simulations	math4mad
Document `Extent` attr for searching the VSO	sunpy/sunpy	Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest net python solar solar-physics sun sunpy	wtbarnes
HyMD profiling	Cascella-Group-UiO/HyMD	chemistry coarse-grained hybrid-particle-field molecular-dynamics optimization physics	hmcezar
Transitive closure	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	LaurentBergeron
Adding UNO cards	ianfhunter/GNOLL	Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	CodeWAdi
Add option to close an `Axis3`'s outline box	JuliaPlots/Makie.jl	Axis3 Makie enhancement gpu graphics julia julia-language plotting visualization	fatteneder
Implement multinomial HMC	blackjax-devs/blackjax	bayesian-inference hamiltonian-monte-carlo help-wanted important mcmc probabilistic-programming sampler sampling-methods	rlouf
IO ImageBase tests not exercised	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting	jhlegarreta
Add (Kernelized) Stein discrepancy diagnostic	blackjax-devs/blackjax	bayesian-inference diagnostics enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	rlouf
Add Macros from various games	ianfhunter/GNOLL	Low/No-Code Macro-Request Multiple-Assignees board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Simplify `minimize_lbfgs` and `pathfinder_adaptation`	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods	junpenglao
Uninformative error message if connection to manager fails	multiscale/muscle3		LourensVeen
Information for new contributors	pandas-dev/pandas	alignment data-analysis data-science flexible pandas python	noatamir
Add `draw_contours` + `assume_spherical_screen` example	sunpy/sunpy	Effort-Medium Examples Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy	wtbarnes
Enable evaluation of multiple inputs at once on a single polynomial	MrMinimal64/multivar_horner	enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	KPJoshi
in pro RESOLVE_ROUTINE, new keyword SKIP_EXISTING is missing	gnudatalanguage/gdl	antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	alaingdl
More gates	CQCL/qujax	enhancement jax python quantum	SamDuffield
Documentation at docs.einsteinpy.org needs updates	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
prolongation does not preserve min/max values	parthenon-hpc-lab/parthenon	amr bug help-wanted high-performance-computing kokkos parthenon	BenWibking
Allow `dict_list` to return other types than dictionaries	JuliaDynamics/DrWatson.jl	enhancement hacktoberfest project-assistant project-management running-listing science science-research setup-tool simulations	Datseris
improve pjit pytree error involving Nones (and PytreeLeafs)	google/jax	better_errors jax	mattjj
Add Macro: Fate of the Norns - Runes	ianfhunter/GNOLL	Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Geodesic Plotting improvements	einsteinpy/einsteinpy	general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion plotting space-physics	JeS24
Python version not working on Windows	multiscale/muscle3		LourensVeen
Provide option to move the legend and logo	jgieseler/solarmach	enhancement esa heliophysics spacephysics spaceweather	jgieseler
[Bug]: Cannot use empty markers in scatter	matplotlib/matplotlib	API-consistency Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	Atcold
Components, kernels and compute elements	multiscale/muscle3		LourensVeen
BUG: freqz does not work on multi-dimensional array, despite what documentation claims	scipy/scipy	Documentation algorithms closember python scientific-computing scipy scipy.signal	sliedes
Adding some basic VI approximation and fitting routine	blackjax-devs/blackjax	bayesian-inference enhancement hamiltonian-monte-carlo help-wanted important probabilistic-programming sampling-methods vi	junpenglao
add `isort` as a pre-commit hook	BiomedSciAI/fuse-med-ml	ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision	SagiPolaczek
Add new example Jupyter notebooks / edit old ones	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
help,/files does not show open files	gnudatalanguage/gdl	Low-priority antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	brandy125
Move interface code out of `eos` folder	lanl/singularity-eos	clean-up	jhp-lanl
Degree to radian	pyomeca/biorbd		Ipuch
Negative weights for KDE	lzkelley/kalepy	enhancement kde kernel-density-estimation pdfs python python3 resample resampling statistical-analysis statistics	Pablobala
`podman manifest create` should support `--format`	containers/podman	Good-First-Issue containers docker kind/feature kubernetes linux oci	jlebon
lo_en can equal hi_en in evselect_image	DavidT3/XGA	astronomy astrophysics bug galaxy-clusters heasoft sas x-ray x-ray-astronomy xga xmm xmm-observations xmm-science-analysis xspec	DavidT3
Add confirmation email and other fields to form	hpc-social/map	community high-performance-computing hpc map	alansill
Clarify docstring for `image`	JuliaPlots/Makie.jl	Makie documentation gpu graphics heatmap-&-image julia julia-language plotting visualization	fatteneder
z as die symbol does not work with percentile dice	ianfhunter/GNOLL	board-game bug c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Setup SonarCloud for C	ianfhunter/GNOLL	C C++ Feature-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Readme Badges should link to documentation for that language	ianfhunter/GNOLL	Low/No-Code board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg	ianfhunter
Dates round/floor/ceil arguments switched	JuliaLang/julia	dates hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
[ENH]: Add setter/getter methods for all keyword parameters to Figure.__init__	matplotlib/matplotlib	Difficulty-Easy Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
[ENH]: "Road sign" boxstyle/annotation	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk topic-annotation wx	oscargus
Helper functions for arithmetic on MSDS	colour-science/colour	Discussion Feature Good-First-Issue color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets	tjdcs
BUG: Wrong (?) documentation in geopandas.sindex.SpatialIndex.query	geopandas/geopandas	bug documentation geoparquet geospatial pandas python spatial	tqa236
`eachindex` should throw `DimensionMismatch` for differently sized tuples	JuliaLang/julia	bug correctness-bug-⚠ hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	cafaxo
Remove or Implement VTK Outputs	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon	forrestglines
Supporting custom naming in `compute.quantiles()`	IAMconsortium/pyam	analysis energy-systems enhancement iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
support more flexible `weights` arguments in `compute.quantiles()`	IAMconsortium/pyam	analysis energy-systems enhancement iamc-format integrated-assessment integrated-assessment-scenarios macro-energy modeling pyam scenario scenario-data timeseries-format visualization	gidden
target completeness should be cached	dsavransky/EXOSIMS		dsavransky
Check that `ParameterInput` is the same on every rank	parthenon-hpc-lab/parthenon	amr bug help-wanted high-performance-computing kokkos parthenon	Yurlungur
Integrate non-holonomic DMPs	dfki-ric/movement_primitives	enhancement help-wanted python robotics	AlexanderFabisch
CLN: Use dedup_names in all instances where duplicate column names are renamed	pandas-dev/pandas	Clean IO-HTML alignment data-analysis data-science flexible pandas python	datapythonista
Add a screenshot for visually showing where the areas of the shell are located	jupyterlab/jupyterlab	documentation jupyter jupyterlab	jtpio
Command palette gets re-rendered even if hidden	jupyterlab/jupyterlab	bug jupyter jupyterlab tagPerformance	krassowski
[Benchmark] Speed comparison with Matlab & R	lrnv/Copulas.jl	copula documentation julia	yanyu2015
Implement new models	renecotyfanboy/jaxspec	help-wanted model	renecotyfanboy
Check initialization values in tests	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting	jhlegarreta
Extreme value statistics	nansencenter/DAPPER	bayesian-filter bayesian-methods chaos data-assimilation enhancement enkf kalman kalman-filtering particle-filter state-estimation	patnr
Integrate ProDMPs	dfki-ric/movement_primitives	enhancement help-wanted python robotics	AlexanderFabisch
Multidimensional version of `RandomShuffle` and `BlockShuffle`.	JuliaDynamics/TimeseriesSurrogates.jl	enhancement hacktoberfest hypothesis-testing julia method-request nonlinear-time-series surrogate surrogates timeseries	kahaaga
Allow more than one structure viewer in structure-only mode	cosmo-epfl/chemiscope	component-jupyter component-structure hacktoberfest materials-science molecule visualization web	Luthaf
[MNT]: Specify ordering in file in gallery folder	matplotlib/matplotlib	Difficulty-Medium Documentation-build Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	story645
Sorting problem on dates	hpc-social/jobs	hpc hpc-social jobs jobs-board opportunities	alansill
Rename coupled() routine to avoid confusion	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
descrip() has extra spaces	statdivlab/rigr	low-priority	adw96
GLMakie: Specifying monitor not functional	JuliaPlots/Makie.jl	GLMakie bug gpu graphics julia julia-language plotting visualization	Arch-Storm
Documentation overhaul	einsteinpy/einsteinpy	documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
Add a `current` symlink to the current run directory when launching a simulation	multiscale/muscle3	enhancement	maarten-ic
no order argument in neighbors()	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	maximelucas
Add cosmology tests	Ciela-Institute/caustics	docs gravitational-lensing pytorch	adam-coogan
Add typing hints to all methods	Autostronomy/AstroPhot	astronomy docs python pytorch science-research scientific-computing	ConnorStoneAstro
Add typing hints to all methods	ConnorStoneAstro/AutoProf	astronomy docs python pytorch science-research scientific-computing	ConnorStoneAstro
A BFS layers algorithm	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	LaurentBergeron
Convert docstrings to google format	Autostronomy/AstroPhot	astronomy docs python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Convert docstrings to google format	ConnorStoneAstro/AutoProf	astronomy docs python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Clean up module imports	Autostronomy/AstroPhot	astronomy python pytorch refactor science-research scientific-computing	ConnorStoneAstro
Clean up module imports	ConnorStoneAstro/AutoProf	astronomy python pytorch refactor science-research scientific-computing	ConnorStoneAstro
lax.conv_transpose has different convention than TF, document it and make switching easy?	google/jax	documentation enhancement jax	mattjj
Make ymmsl documentation easier to find	multiscale/muscle3		maarten-ic
Make output mesh CLI argument in `precice-aste-run` optional	precice/aste		davidscn
Enable diff mode between data sets	precice/aste		davidscn
Test time delays for thin lenses	Ciela-Institute/caustics	gravitational-lensing pytorch	adam-coogan
PERL5LIB missing when activating environment with Perl packages	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager perl python radiuss scientific-computing spack	marcodelapierre
Node positions for drawing could have an improved data structure	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
CI: add test for GCC 13.x and GCC trunk	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
DOC: Simplify pandas theme footer	pandas-dev/pandas	Docs alignment data-analysis data-science flexible pandas python	datapythonista
[Bucket] Support more loaders	automl/amltk	feature	eddiebergman
Running sessions status bar title does not work	jupyterlab/jupyterlab	bug jupyter jupyterlab	krassowski
Migrate tbump.toml to pyproject.toml	scikit-hep/pyhf	asymptotic-formulas chore closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy packaging python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	kratsg
Unit tests for Utils	Autostronomy/AstroPhot	astronomy python pytorch science-research scientific-computing test	ConnorStoneAstro
Unit tests for Utils	ConnorStoneAstro/AutoProf	astronomy python pytorch science-research scientific-computing test	ConnorStoneAstro
Allow micro simulations to pass data to be used only in the adaptivity calculation	precice/micro-manager	coupling help-wanted macro-micro multiphysics multiscale research-and-development	IshaanDesai
Produce more detailed MeshGenerator errors	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	loganharbour
Add interpolation options to `sample_at_coords()`	sunpy/sunpy	Effort-High Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	ayshih
Broken documentation links on Gensim's PyPI page	RaRe-Technologies/gensim	bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec	piskvorky
Allow selection and picking of surfaces with triangle strips	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation	Garyfallidis
ENH: expose `greedy` colouring from mapclassify	geopandas/geopandas	enhancement geoparquet geospatial pandas plotting python spatial	martinfleis
Restart from latest checkpoint	ECP-WarpX/WarpX	component-checkpoint/restart enhancement gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	sheroytata
Streamline CI workflow	Qiskit/qiskit-experiments	qiskit	coruscating
Distribution API seems missing	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci	lnnwvr
New optimized variable-coefficient second-derivative operators of Stierström, Almquist, Mattsson	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Feature Types From Loaded Model	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees documentation feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	DanRamage
Use `__future__.annotations` everywhere in the Optuna code base	optuna/optuna	code-fix contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python	HideakiImamura
Create a non-root default user with id 1000	scikit-hep/pyhf	Docker asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax needs-triage numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow	matthewfeickert
BUG: Incorrect error message in LinearOperator.rmatmul	scipy/scipy	algorithms closember defect python scientific-computing scipy scipy.sparse.linalg	akhmerov
Support different audio / directory structures	CouncilDataProject/speakerbox	audio-classification enhancement speaker-id speaker-identification transformers	evamaxfield
attributes path causing confusion in write_matsim function	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
" in returned Id attribute ( /v1.24/images/${img}/history )" >REST API: "\u003cmissing\u003e" instead of "" in returned Id attribute ( /v1.24/images/${img}/history )	containers/podman	Good-First-Issue bugweek containers docker kind/bug kubernetes linux oci	eriksjolund
Consistent naming of generators	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
[Tests] Test all qubit templates	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Replace print statements by warnings or stderr in NCBIXML	biopython/biopython	bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Potential bug could occur in deletion of files in test harness	idaholab/moose	C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	permcody
Add Apriori algorithm also for better comparison	firefly-cpp/NiaARM	association-rule-mining association-rules data-mining data-science enhancement evolutionary-algorithms help-wanted swarm-intelligence	minakshikaushik
update ICESat-2 resource guide	icesat2py/icepyx	closember community-driven documentation hacktoberfest icesat-2 python3	JessicaS11
MooseDocs media extension doesn't throw an error if there is a syntax issue in an option	idaholab/moose	C-Documentation Good-first-issue P-normal T-defect amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	cticenhour
Support device mapping in kube play similar do Kubernetes device plugins	containers/podman	Good-First-Issue containers docker kube kubernetes linux oci volunteers-wanted	rhatdan
Non-interactive toggle of Toggle?	JuliaPlots/Makie.jl	Makie Widgets enhancement gpu graphics julia julia-language plotting visualization	moyner
compare_by plotter: filenames too long for large symbols	JPenuchot/ctbench	benchmark clang compilation data-analysis data-visualization gcc metaprogramming	JPenuchot
Add reverse direction serialization	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	mtreinish
remaining autodiff functors	roualdes/bridgestan	c cpp enhancement julia python r stan	bob-carpenter
Convert all indexing variables to `size_t`/`ptrdiff_t`	cholla-hydro/cholla	code-cleanup enhancement refactor	bcaddy
documentation on jyear and decimalyear	astropy/astropy	Docs Effort-low Feature-Request astronomy astrophysics astropy python science time	fsc137-cfa
`top_k` for `multiclassf1score` is not working correctly	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning machine-learning metrics python pytorch v0.11.x	eneserdo
Add a CI test to ensure that docs are building	maps-as-data/MapReader	article computer-vision deep-learning digital-humanities enhancement hut23 hut23-96 machine-learning maps new-feature pytorch spatial-data	andrewphilipsmith
Suggestions for documentation and features	biaslab/RxInfer.jl	bayesian-inference documentation enhancement inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference	John-Boik
Consider removing <4 gene limit	NathanSkene/EWCE	benchmarking deconvolution enhancement single-cell single-cell-rna-seq transcriptomics	bschilder
New optimized second-derivative operators of Eriksson and Mattsson (2022)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
[Analysis] Analyze differences in outputs generated with LSA method and solved with linalg.solve	DataverseLabs/pyinterpolate	Good-First-Issue concept help-needed kriging machine-learning math-and-logic poisson-kriging python semivariogram spatial-analysis spatial-interpolation	SimonMolinsky
Support local volumes with a lifetime longer than that of the podman host	containers/podman	Good-First-Issue containers docker kubernetes linux oci	samuel-f
DOC: Fix docs for various offset constructors	pandas-dev/pandas	Docs Frequency alignment data-analysis data-science flexible pandas python	Dr-Irv
Matplotlib updatable plot slowing down data acquisition	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pysimplegui python real-datasets step-response	samirmartins
Add full support for CDF	gnudatalanguage/gdl	antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization	GillesDuvert
[Request] Dates.unix2datetime with local time option	JuliaLang/julia	dates hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	kescobo
`update_ghost` performance	hpc-maths/samurai	adaptive-mesh-refinement amr cartesian scientific-computing	gouarin
outlet grid cells don't report channel outflow	IMMM-SFA/mosartwmpy	enhancement	thurber
DOC: docstrings in robust.norms, improve, reorganize	statsmodels/statsmodels	comp-docs comp-robust count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis	josef-pkt
High level schematic overview of Makie's elements/structure	JuliaPlots/Makie.jl	documentation gpu graphics julia julia-language plotting visualization	fbanning
Inconsistent naming conventions of class member variables / C++ standards violations	lanl/singularity-eos	clean-up help-wanted	chadmeyer
Showing strings compactifies too aggressively	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific strings	KristofferC
heatmap visibility in volumeslices can't be toggled independently	JuliaPlots/Makie.jl	Attributes Makie gpu graphics julia julia-language plot plotting visualization	tomchor
Add type stability tests	JuliaHEP/UnROOT.jl	cern-root hacktober help-wanted hep high-energy-physics julia particle-physics	tamasgal
Update publishing notebook example dataset	MLMI2-CSSI/foundry	chemistry data-science datasets documentation-and-examples machine-learning materials-science	ascourtas
Unspecified feature name when getting most of errors caused by data	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	AndreyGurevich
Add description field to events page	hpc-social/events		vsoch
Add to calendar button / download link to ical	hpc-social/events		vsoch
How to get or create plot tree structure in R?	catboost/catboost	R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	viniCerutti
gallery disappears when switching between results and parameter sections	kanaverse/kana	bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly	jkanche
Missing optimized vector container for `Raw` type	extendr/extendr	api-wrapper enhancement extension ffi-bindings r rust	Ilia-Kosenkov
The input (stdin) styling does not match that of JupyterLab	jupyterlab/jupyterlab	bug jupyter jupyterlab tagCSS	SylvainCorlay
Improve version tracking and deprecate SVN support	dsavransky/EXOSIMS	enhancement help-wanted	dsavransky
Classical in-situ radiation computation	ECP-WarpX/WarpX	component-diagnostics gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	berceanu
Dialog closes unexpectedly when typing in the textarea	jupyterlab/jupyterlab	bug jupyter jupyterlab	verilog15
Remove astro-colibri from Summary	snad-space/ztf-viewer		pruzhinskaya
optimized convenance methods for conversion between SIMDe public types of the same size	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
Ensure compliance with more Ruff rules	astropy/astropy	Feature-Request Package-novice Refactoring astronomy astrophysics astropy dev-automation python science	eerovaher
`Booster.save_model(format="pmml")` is highly inefficient in size.	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	UriyaHarpeness
catboost is unable to calculate shap values when set_scale_and_bias is used	catboost/catboost	big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning model-analysis python r tutorial	antipisa
Register LaTeX reader for Cosmology	astropy/astropy	Feature-Request astronomy astrophysics astropy cosmology python science	nstarman
Granular `@fastmath` flags	JuliaLang/julia	feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	mikmoore
Current algorithms planned for implementation	Pometry/Raphtory	Algorithms Enhancement Good-first-issue Meta analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Network generation models planned for implementation	Pometry/Raphtory	Good-first-issue Network-Generation Rust-Core analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Document the graph generation module	Pometry/Raphtory	Documentation Good-first-issue Network-Generation analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Add feature to automatically set reference energy for Davis Products EOS	lanl/singularity-eos	enhancement	jhp-lanl
[ENH]: subfigure_mosaic	matplotlib/matplotlib	Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt tk wx	anntzer
Maybe measure convergence in the power-serie in `katz_centrality`	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	acombretrenouard
Do proper management of EOSPAC tables on copy and "Finalize"	lanl/singularity-eos	enhancement	jhp-lanl
[feature] complete materials.py	lcpp-org/RustBCA	bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura	drobnyjt
`@. vec = vec +1` gives unhelpful error	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	LilithHafner
compiler find: `clang` compilers don't look for `flang-new` on Fedora	spack/spack	bug build-tools hpc hpsf impact-low linux macos package-manager python radiuss scientific-computing spack	iamashwin99
Alternative method of particle initialisation from a file	ECP-WarpX/WarpX	component-core component-openPMD gpu hpsf laser particle-in-cell physics pic plasma research simulation	PhysicsDan
Improve label placement in output plots	lucydot/effmass		lucydot
Support loading aux string directly	mzy2240/ESA	automation contingency-analysis enhancement esa graph-analysis help-wanted hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability	mzy2240
2intersect: implement AVX512F optimizations proposed by Guille Díez-Cañas arXiv:2112.06342 [cs.DS]	simd-everywhere/simde	altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization	mr-c
promote logger and writer mock objects from pathfinder utils	stan-dev/stan	bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup feature stan testing	bob-carpenter
[Bug]: alpha array-type not working with RGB image in imshow()	matplotlib/matplotlib	Difficulty-Medium Good-first-issue data-science data-visualization gtk matplotlib plotting python qt status-confirmed-bug status-has-patch tk topic-color/alpha topic-images wx	patquem
INSTALL: `mpirun` not symlinked by `firedrake-install`	firedrakeproject/firedrake	installation	JDBetteridge
New method to interpolate dataset on theta surface	euroargodev/argopy	argo argo-data argo-floats enhancement help-wanted oceanography python	gmaze
Prefer Insight Journal DOIs to URL in references	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
[Doc]: dynamically resize the mathtext symbol tables	matplotlib/matplotlib	Documentation Good-first-issue Maintenance data-science data-visualization gtk matplotlib plotting python qt tk topic-text/mathtext wx	story645
Cannot Ctrl+C to end streamlit process from CLI without an open tab (in Windows)	streamlit/streamlit	areawindows data-analysis data-science data-visualization deep-learning developer-tools featurecli machine-learning priorityP3 python statusconfirmed streamlit typebug	MathCatsAnd
ExtrudedMesh does not inherit `_base_mesh` if made from modified coordinates	firedrakeproject/firedrake	bug	ksagiyam
JSON export incompletely specifies categorical splits of non-symmetric trees	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	BenModulusLabs
Split descriptions are of insufficient precision	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial	BenModulusLabs
In PTM search assigned unimod id dosen't match real unimod id	smith-chem-wisc/MetaMorpheus	Bug calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	Nate4499
Reject starting with multiple threads if `--handle-signals=no`	JuliaLang/julia	docs error-messages hacktoberfest hpc julia julia-language julialang machine-learning multithreading numerical programming-language science scientific	vchuravy
Remove/reduce large example data: examples/data/example_data/lsoas	arup-group/pam	arup city-modelling city-modelling-lab cml transit	fredshone
Menu dropdown is not always on top in click event order	JuliaPlots/Makie.jl	Widgets bug gpu graphics interaction julia julia-language planning plotting visualization	rafaqz
Plot multiple models onto fit lightcurve	nuclear-multimessenger-astronomy/nmma	enhancement	tylerbarna
`allunique(::String)` performance anomaly	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific strings	chrstphrbrns
`dask.array.linalg.qr` does not conform to the Array API spec	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	ogrisel
`dask.array.linalg.svd` does not conform to the Array API spec	dask/dask	array dask numpy pandas pydata python scikit-learn scipy	ogrisel
Add hover text to tables	fitbenchmarking/fitbenchmarking	Enhancement Good-first-issue	tyronerees
VSCode debugging recipe (python)	multiscale/muscle3	documentation	AreWeDreaming
TST: mixed_int_string Index	pandas-dev/pandas	Index Testing alignment data-analysis data-science flexible pandas python	jbrockmendel
Add reference magnitudes to downloadable CSV files	snad-space/ztf-viewer		hombit
[Bug]: macOS backend run by non-logged-in user crashes in Ventura	matplotlib/matplotlib	Difficulty-Medium GUI-MacOSX Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tjni
Document that describe is using approximate algorithms	dask/dask	dask dataframe documentation numpy pandas pydata python scikit-learn scipy	fjetter
Fix bulk modulus formula in API documentation	lanl/singularity-eos	documentation	jhp-lanl
Bug report: Slit size depends on the wave range that it is applied on	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy	saradelahaie
location list condition	mathLab/PINA	deep-learning differential-equations enhancement equation-learning hacktoberfest lightining machine-learning modeling neural-networks neural-operators ode pde physics-informed physics-informed-neural-networks pinn python pytorch	ndem0
automatic dimension for extra features	mathLab/PINA	deep-learning differential-equations enhancement equation-learning hacktoberfest lightining machine-learning modeling neural-networks neural-operators ode pde physics-informed physics-informed-neural-networks pinn python pytorch	ndem0
New first- and second-derivative coefficients of Sharan, Brady, Livescu (2022)	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
Minimal working code example in experiment API docs	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Doc: Generate a comparison table for matrix class methods	cupy/cupy	catdocument contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
Document best use cases versus alternatives	kblin/ncbi-acc-download	help-wanted	peterjc
Add links to examples from the docstrings and user guides	scikit-learn/scikit-learn	Documentation Meta-issue Sprint data-analysis data-science machine-learning python statistics	adrinjalali
Python Grid class should have __str__()	multiscale/muscle3		LourensVeen
Better typing and checks for index header	mad-lab-fau/tpcp	algorithms biosignals data-management data-science machine-learning python	AKuederle
Remove References to Garnett in Package-wide Documentation	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis documentation hacktoberfest molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task	tommy-waltmann
Update host_callback used in blackjax	blackjax-devs/blackjax	bayesian-inference hamiltonian-monte-carlo probabilistic-programming sampling-methods	junpenglao
Allow to set spine stroke style	JuliaPlots/Makie.jl	Axis Makie enhancement gpu graphics julia julia-language plotting visualization	lassepe
No documentation for Julia 1.10-beta	JuliaLang/julia	docs docsystem hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	eschnett
Add job splitting information to the experiment class	Qiskit/qiskit-experiments	enhancement qiskit	coruscating
Add CI to check test coverage	precice/micro-manager	coupling help-wanted macro-micro multiphysics multiscale research-and-development	IshaanDesai
Add some tests with rationals	ranocha/SummationByPartsOperators.jl	boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts	ranocha
generalize our `BigFloat(::Float64)` method to more integer and floatingpoint types.	JuliaLang/julia	bignums hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific	oscardssmith
"Create coordinate objects" how-to guide should show how to creat coordinate with custom observer	sunpy/sunpy	Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy	wtbarnes
Move Carsus Notation to "Getting Started"	tardis-sn/carsus	astronomy atomic-database bug documentation python	atharva-2001
Feature Request: Reset Settings Button	SatelliteShorelines/CoastSeg	Optional V2 colab earth-engine enhancement jupyter landsat python	2320sharon
Implement CCA-classes that can account for sample groups	jameschapman19/cca_zoo	canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca	JohannesWiesner
Review maximum cardinality search algorithm in `complete_to_chordal_graph`	networkx/networkx	Good-First-Issue Question complex-networks graph-algorithms graph-analysis graph-generation graph-theory graph-visualization python spec-0 spec-1 spec-4	richardrl
Implementing tension statistics	williamjameshandley/anesthetic	bayesian-inference enhancement fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy	DilyOng
Make GenericMap.plot() arguments keyword only	sunpy/sunpy	Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	dstansby
Check package deployed on PyPI via CI	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
Use DocumenterCitations.jl	JuliaDynamics/TimeseriesSurrogates.jl	documentation hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries	kahaaga
Making support for Dev Containers for GitHub Codespaces	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools machine-learning python streamlit typeenhancement	cr2007
Expand discriminator documentation	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Implement string representation (`__repr__`) in sparse matrix classes	cupy/cupy	catenhancement contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor	kmaehashi
In to_vertex_df the vertex id should be the index	Pometry/Raphtory	Enhancement Good-first-issue Python analytics database embedded-database graph graph-database neo4j olap python rust temporal time-series	miratepuffin
Include aligned sequences and translations in ndjson	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	chaoran-chen
Using PYDAQ requires the NIDAQmx driver.	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pysimplegui python real-datasets step-response	samirmartins
`ParameterInput` is kind of delicate	parthenon-hpc-lab/parthenon	amr help-wanted high-performance-computing kokkos parthenon	bprather
Mermaid Usage Instructions Missing	jupyterlab/jupyterlab	bug documentation jupyter jupyterlab	startakovsky
Replace print with proper logging	ECSHackWeek/impedance.py	battery corrosion electrochemistry fuel-cell impedance lithium-ion	ma-sadeghi
`arrows(points, directions; kwargs...)` doesn't work (CairoMakie backend)	JuliaPlots/Makie.jl	Makie arrows bug conversions gpu graphics julia julia-language plotting visualization	aafsar
Save-As should use a head request (it does not need the body) and get should catch non-existing.	jupyterlab/jupyterlab	enhancement jupyter jupyterlab statusBlocked tagPerformance	Carreau
add percentages to MongoExtractJobStore log output	SMI/SmiServices	priority/low type/enhancement	rkm
Use latest release of GMSO; add GAFF to tests	cmelab/flowerMD	hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
Output block / boundary restriction groups	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Parallel computation on a cluster	WilliamLwj/PyXAB	algorithm automl bandit-algorithms blackbox-optimization continuous-armed-bandit data-science hyperparameter-optimization hyperparameter-tuning lipschitz-bandit machine-learning machine-learning-algorithms online-learning optimization optimization-algorithms reinforcement-learning x-armed-bandit	talmiller2
Refactor `parse`	extendr/extendr	api-wrapper extension ffi-bindings r rust	CGMossa
Document which GenericMap methods work with dask	sunpy/sunpy	Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy	dstansby
Streamline the `coordinates` module	einsteinpy/einsteinpy	coordinates general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics	JeS24
Provide a micro simulation abstract class which users can inherit/create a subclass	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
[Docs FR] Add inset example	JuliaPlots/Makie.jl	Axis documentation enhancement gpu graphics julia julia-language plotting visualization	KronosTheLate
BENCH: fix disabled (broken) benchmarks	scipy/scipy	Benchmarks algorithms closember maintenance python scientific-computing scipy task	j-bowhay
Move to Julia 1.9, use extensions remove Requires for `collect_results` and Dataframes	JuliaDynamics/DrWatson.jl	hacktoberfest project-assistant project-management science science-research setup-tool simulations update	Datseris
Feature: Scaling tendency / Saturation Index	KingsburyLab/pyEQL	Good-First-Issue feature	rkingsbury
Research Needed: Investigate mixing rules for mixed salt properties	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Research Needed: Validity of speciation + Pitzer activity in native engine	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Goal: Increase test coverage to 90%	KingsburyLab/pyEQL	Good-First-Issue enhancement pkg	rkingsbury
Account for producer shutins	frank1010111/pywaterflood	enhancement help-wanted petroleum-engineering python reservoir rust	frank1010111
Add forecasting tutorial	frank1010111/pywaterflood	documentation help-wanted petroleum-engineering python reservoir rust	frank1010111
`Cache.download()` deletes an expired file before knowing that it can download a new version of the file	sunpy/sunpy	Effort-Low Good-First-Issue Package-Intermediate Priority-Low astronomy astropy data hacktoberfest python solar solar-physics sun sunpy	ayshih
Benchmarks & benchmarking notebook	CQCL/qujax	enhancement jax python quantum	gamatos
Include example notebooks in documentation	CQCL/qujax	documentation jax python quantum	gamatos
[Doc]: List supported hatches and link to/embed hatch reference on hatches API page	matplotlib/matplotlib	Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-hatch wx	story645
DataInspector shall show Gray(val) for gray images	JuliaPlots/Makie.jl	DataInspector Makie enhancement gpu graphics julia julia-language plotting visualization	MariusDrulea
Consider replacing ternary expressions with multiplicative conditionals	lanl/singularity-eos	Performance	jhp-lanl
mypy doesn't see InstanceFlags	multiscale/muscle3		LourensVeen
Separate out unit and integration tests	scverse/scvi-tools	CI/CD P2 cite-seq deep-generative-model deep-learning human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq tests variational-autoencoder variational-bayes	martinkim0
Conversion from logits to probabilities happens on a batch by batch basis	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch v1.0.x	GabrielBianconi
InstanceManager crashes on shutdown if no stderr.txt is present	multiscale/muscle3		LourensVeen
options key is "ProcessDirectoryOptions" but app has since been renamed to "DicomDirectoryProcessor"	SMI/SmiServices	help-wanted priority/low type/bug	rkm
clarify time units in global options	SMI/SmiServices	help-wanted priority/low type/enhancement	rkm
Include function usage examples in docstrings/API documentation	CQCL/qujax	documentation jax python quantum	gamatos
Integrate Linux package manager commands into documentation	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	thewtex
Add check if dependencies are installed correctly when Micro Manager is installed via pip	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
Map subclass page in docs can have two "Notes" sections	sunpy/sunpy	Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	ayshih
[New copulas] Extreme values copulas	lrnv/Copulas.jl	copula julia	lrnv
Add a default plotting utility before running fits	sblunt/orbitize	easy enhancement help-wanted	sblunt
`minimal_cycle_basis`	Qiskit/rustworkx	dag graph graph-theory python rust	quantumjim
Add method to save a simulation's reference values and units to file	cmelab/flowerMD	enhancement hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
Feature: Vectorization and unvectorization for Hermitian matrix	vprusso/toqito	feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
Fit multiple peaks in chi2 map of interferometric observations	sblunt/orbitize	enhancement help-wanted	sblunt
Add accepted format type to load_seq function	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science documentation evolution genomics markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	cthwe
Documentation for podman build inconsistent with actual behaviour	containers/podman	Good-First-Issue containers docker documentation kind/bug kubernetes linux oci	deltoura
DOCS: Documentation is broken	firedrakeproject/firedrake	bug documentation straightforward wishlist	JDBetteridge
Providers can break completions when `isApplicable()` raises	jupyterlab/jupyterlab	bug jupyter jupyterlab pkgcompleter	krassowski
Broken link: the link to the code of conduct in README.md	multiscale/muscle3		Elisa-on-GitHub
dev: Use kwargs only in dataclasses	thomaspinder/GPJax	bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming stale	thomaspinder
Use pathlib instead of os	tardis-sn/carsus	astronomy atomic-database python	jvshields
Known problems installing Exo-Striker on MacOS ( with Anaconda with Version 0.85+)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem help-wanted multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	3fon3fonov
Implement conditional batch/layer normalization	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	martinkim0
Models for the folded background	renecotyfanboy/jaxspec		renecotyfanboy
Move `get_c_interface` into toml files.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Is there any alternatives like `docker buildx imagetools` ?	containers/podman	Good-First-Issue containers docker kubernetes linux oci	rhatdan
Helper class for IPC memory handling?	cupy/cupy	catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priomedium python rocm scipy tensor	kmaehashi
Document the support for 64-bit integer sparse matrix indices.	qutip/qutip	python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	hodgestar
speed up buildScoreCache	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Check and handle collinearity for all distributions.	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
export abn to .net file	furrer-lab/abn	bayesian-network binomial categorical-data enhancement gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
capture output of tests on windows to "dev/null"	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Numerical variations in IRLS for Poissons	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Session crashes / low-level error from irls_poisson_fast.cpp if no solution found by solve()	furrer-lab/abn	bayesian-network binomial bug categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
become PEP8 compliant	icesat2py/icepyx	closember community-driven hacktoberfest help-wanted icesat-2 python3	JessicaS11
Base.isidentifier(::Symbol) should check normalization	JuliaLang/julia	bug display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical parser programming-language science scientific	stevengj
Gradient dialect removes `qnode` attribute from quantum functions when creating helper functions.	PennyLaneAI/catalyst	autodiff automatic-differentiation bug compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Missing docstrings for public/exported symbols	JuliaLang/julia	docs hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific	stevengj
Feature request: peptide position information in results	lazear/sage	bioinformatics enhancement mass-spectrometry proteomics	kabalak
Filter compile flags based on compile options.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Examples: Plasma-Based Acceleration	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Laser-Plasma Interaction	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Particle Accelerator & Beam Physics	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Nuclear Fusion	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Examples: Fundamental Plasma Physics	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
`@noinline` confuses `@code_typed` reporting wrong return type when return value is unused.	JuliaLang/julia	hacktoberfest hpc julia julia-language julialang machine-learning numerical observability programming-language science scientific	NHDaly
Reimplement immutabledefaultdict	snad-space/ztf-viewer	enhancement	hombit
Make async qnodes specific to qnodes, not the whole JIT context.	PennyLaneAI/catalyst	autodiff automatic-differentiation enhancement jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
[Student copula] fitting	lrnv/Copulas.jl	copula julia	lrnv
change size of node labels?	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
Pushing custom information to the InferenceResult	biaslab/RxInfer.jl	bayesian-inference documentation enhancement inference-engine julia-language machine-learning message-passing probabilistic-programming variational-inference	ThijsvdLaar
Choose target ISA in `@code_llvm` and `@code_native`	JuliaLang/julia	feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	giordano
template Riemann solvers on idir	AMReX-Astro/Castro	adaptive-mesh-refinement amr astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions	zingale
Group import hint by bindings	JuliaLang/julia	REPL hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	Keno
Inconsistent default values for `average` argument in classification metrics	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning help-wanted machine-learning metrics python pytorch question v1.3.x	StefanoWoerner
Some recipes fail when plotting empty vectors	JuliaPlots/Makie.jl	Collection Makie bug conversions gpu graphics julia julia-language plotting visualization	BambOoxX
Add classes for some of the OPV molecules we had in Planckton	cmelab/flowerMD	hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
Area-based contours	sunpy/sunpy	Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy	settwi
FDTD Solver: `AMREX_RESTRICT` Pointers & References	ECP-WarpX/WarpX	Performance-optimization component-core gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Speedup of `_correlation_3op_dm`	qutip/qutip	python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	theodotk
Feature: Common quantum overlap	vprusso/toqito	feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
Feature: Common epistemic overlap	vprusso/toqito	feature-request help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
`add_scaled_arg` in `sourmash.cli.cli_utils` does not use `default`	sourmash-bio/sourmash	bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling	ctb
Titles are not optional arguments for multi-group legends	JuliaPlots/Makie.jl	Legend-&-Colorbar Makie bug gpu graphics julia julia-language plotting visualization	Ezequiel92
Clearly mark analysis result names in documentation	Qiskit/qiskit-experiments	documentation qiskit	coruscating
Median Quartiles and Box Plots	Qiskit/qiskit-experiments	enhancement qiskit	AbdullahKazi500
ISTARF reservoir parameters required even when not used	IMMM-SFA/mosartwmpy	enhancement	thurber
When using a quadlet, the generated RequiresMountsFor doesn't properly handle space characters	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci quadlet	lespea
np.median raises AssertionError for empty arrays while numpy returns nan	numba/numba	compiler cuda llvm numba numpy parallel python	leoschwarz
`nextafter` (via both `math` and `numpy`) missing for CUDA	numba/numba	CUDA compiler cuda feature_request llvm numba numpy parallel python	s-m-e
Background MCC model: allow ionization by incident particles that are not electrons	ECP-WarpX/WarpX	component-collisions component-ionization gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	RemiLehe
Check that all notebooks run with the latest version of the code	StingraySoftware/stingray	astronomy astrophysics blackhole blackholes data-analysis docs fourier-analysis fourier-transform hacktoberfest help-wanted neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries	matteobachetti
Create a function to store the local exceedence intensity maps as netcdf file	CLIMADA-project/climada_python	enhancement help-wanted	simonameiler
Create a dockerfile for coastseg	SatelliteShorelines/CoastSeg	colab earth-engine enhancement help-wanted jupyter landsat python	2320sharon
mark binomial_exact() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
mark poisson_low() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
mark poisson_exact() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
mark tprob() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
mark identity() function for removal	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	GavinHuttley
Remove `np.testing` from unit tests	vprusso/toqito	enhancement help-wanted matrix-analysis physics pytest python python-3 quantum quantum-computing quantum-information unitaryhack	purva-thakre
Add more checks for the individual control parameters of `fit.control()` and `build.control()`	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache: doesn't work with `defn.res` and `which.nodes` provided together	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache: `max.parents` as list and `defn.res` doesn't work	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Which are valid combination of `cor.var`, `which.nodes` and `group.var`?	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildscorecache_mle(): catcov.mblogit = "single" is not implemented	furrer-lab/abn	bayesian-network binomial categorical-data enhancement gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
fitabn_mle(): `catcov.mblogit = "single"` is not implemented	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
buildScoreCache doesn't work with `defn.res` and `which.nodes` provided together	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
fitabn_mle(): Return very low score when multinomial fit is NULL	furrer-lab/abn	bayesian-network binomial categorical-data gaussian grouped-datasets mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
More options for MDAnalysis trajectory playback	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	BradyAJohnston
Is it possible to allow `pathlib.Path` to be passed as argument to `Mesh()`?	firedrakeproject/firedrake	enhancement straightforward	p479h
Allow returning eigenstates as an operator.	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	Ericgig
Enable checkpointing with autotune	scverse/scvi-tools	P1 cite-seq deep-generative-model deep-learning human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	martinkim0
Degree centrality support	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	Paulo-21
Add `BeginStep` and `EndStep` as part of the context manager	jorgensd/adios4dolfinx	adios2 checkpointing fenicsx mpi-applications	finsberg
Add gradient mesh flag to `band_structure` program	HofstadterTools/HofstadterTools	band-theory condensed-matter-physics electromagnetism enhancement fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order	bartandrews
Add density of states flag to `band_structure` program	HofstadterTools/HofstadterTools	band-theory condensed-matter-physics electromagnetism enhancement fractals mathematical-physics quantum-hall-effect quantum-physics theoretical-physics topological-materials topological-order	bartandrews
Math expressions in caustics docs	Ciela-Institute/caustics	docs gravitational-lensing pytorch	ConnorStoneAstro
Incorrect result in computing `MulticlassRecall` macro average when `ignore_index` is specified	PyTorchLightning/metrics	analyses bug-/-fix data-science deep-learning machine-learning metrics python pytorch v0.10.x v0.11.x v0.9.x v1.0.x v1.1.x v1.2.x v1.3.x v1.4.x	JeroenMandersloot
Add documentation for using Fraggle	MintonGroup/swiftest	documentation	profminton
Enable "Search Cell Outputs" in Find/Replace, disable "Replace" button when an output is highlighted	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgdocumentsearch tagSearch-and-Replace	JasonWeill
Spin Tracking	ECP-WarpX/WarpX	component-spin-tracking gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Create method for drawing synthetic data from a model	NIFTy-PPL/NIFTy	enhancement jax	Edenhofer
Implementation of Louvain Algorithm	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	jamesdbaker
New function: best.deadband a function to find the best deadband to use	Qepanna/goFlux	enhancement	Qepanna
Add more choices to the argument side in the function flux.plot	Qepanna/goFlux	enhancement	Qepanna
New function: autoID to create UniqueID from aux file without clicking on peaks	Qepanna/goFlux	enhancement	Qepanna
Suggestion: Limit the number of plots per page in the output of flux2pdf	Qepanna/goFlux	enhancement	Qepanna
New function: crop.meas to modify time columns in measurement data sets	Qepanna/goFlux	enhancement	Qepanna
New function: a Shiny app to align clocks on multiple instruments	Qepanna/goFlux	enhancement	Qepanna
Add warning message to import functions if wrong extension in raw file	Qepanna/goFlux	documentation	Qepanna
Add argument for "matchID" instead of UniqueID in flux2pdf	Qepanna/goFlux	enhancement	Qepanna
Support profiling without source code changes	google/jax	enhancement jax	cheshire
Add Qobj method for getting data as a numpy array shaped like a tensor rather than an array	qutip/qutip	ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	nlupugla
Deconvolving Cls	heracles-ec/heracles	astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	JaimeRZP
replace BatchNorm with LayerNorm	mackelab/sbi	API-changes bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	bkmi
replace BatchNorm with LayerNorm	sbi-dev/sbi	API-changes bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	bkmi
Contribution: Add new audio/speech metrics for generative audio	PyTorchLightning/metrics	New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch topic-Audio	d-caviedes
Replace scalar instances of `np.sqrt`, `np.cos`, etc. with `math` alternatives	glotzerlab/freud	analysis computational-chemistry computational-physics data-analysis hacktoberfest molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task	janbridley
Implementing custom multi quantile loss.	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial	mat-ej
Store weights in metadata of binned spectra and mixmats	heracles-ec/heracles	astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	ntessore
Add pgstar decorator to mark solver progress in Trho profiles + Kippenhahn diagrams	MESAHub/mesa	astronomy astrophysics binary-evolution enhancement fortran stellar-astrophysics stellar-evolution	Debraheem
Add `mul_hi`	JuliaLang/julia	feature hacktoberfest hpc julia julia-language julialang machine-learning maths numerical programming-language science scientific	LilithHafner
Change `run_update_volume` to use the new box parameter in `hoomd.update. BoxResize`	cmelab/flowerMD	hoomd-blue molecular-dynamics molecular-dynamics-simulation mosdef-hub polymer simulation	chrisjonesBSU
ApplyStencil: Shared Memory & Fixed Stencils	ECP-WarpX/WarpX	Performance-optimization gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Add optional `origin` parameter to `pie`	JuliaPlots/Makie.jl	Makie enhancement gpu graphics julia julia-language plot plotting visualization	JohannesNE
suggestions for write_cl	healpy/healpy	Good-first-issue HelpUs	hivon
Make PyGLTFLib an optional dependency	fury-gl/fury	3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation	guaje
Beam Pattern Support	thorstone25/qups	digital-signal-processing enhancement imaging matlab matlab-toolbox prototyping signal-processing toolbox ultrasound ultrasound-imaging	thorstone25
Convert example scripts from documentation to code-blocks except for those that generate outputs.	MintonGroup/swiftest	documentation	profminton
Missing VDW radius values for rarely used elements	BradyAJohnston/MolecularNodes	biochemistry blender blender-addon enhancement geometry-nodes help-wanted molecular molecular-dynamics molecular-graphics molecular-modeling molecule pdb protein protein-data-bank protein-structure protein-visualization proteins sciart structural-biology visualisation	rbdavid
Use TensorBoard as default logger	scverse/scvi-tools	P2 cite-seq deep-generative-model deep-learning enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	martinkim0
Code maintainability - utils/__init__.py split (?)	bluesky/bluesky	bluesky dataacquisition design-discussion hackathon maintenance python	stan-dot
`--input-pcr-primers` listed in CLI help options despite being removed in v3	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tbug virus	kapsakcj
Output runtime for calculation of similarity	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	steffenger
Warn if Laser Plane is too Close to Absorbing/Thermal Boundary	ECP-WarpX/WarpX	changes-input-scripts-/-defaults component-boundary gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Implementation of Community Detection via Semi-Synchronous Label Propagation Algorithms	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	gulldan
test and bugfix arm architecture support	MrMinimal64/multivar_horner	bug evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3	jannikmi
Improve test coverage in `callbacks/broker.py`	bluesky/bluesky	bluesky dataacquisition hackathon python	DominicOram
The examples in the document are inconsistent with the API interface	JuliaDynamics/DrWatson.jl	documentation hacktoberfest project-assistant project-management science science-research setup-tool simulations	nighthink
read_cdf/TimeSeries crashes if CDF variable doesn't have a 'FILLVAL' attribute	sunpy/sunpy	Affects-Dev Affects-Release Effort-Low Good-First-Issue Package-Novice Priority-High astronomy astropy hacktoberfest io io/CDF python solar solar-physics sun sunpy timeseries	jgieseler
Code warntype should show print the unstable SSA values in red/yellow	JuliaLang/julia	display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	gbaraldi
Units discrepancies between __init__ and get_amount	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Add static type annotations	dask/dask	dask numpy pandas pydata python scikit-learn scipy	sam-goodwin
Associate fields with catalogues in config files	heracles-ec/heracles	CLI astronomy cosmology enhancement healpix large-scale-structure python spherical-harmonics	ntessore
Review type ignore statements	nci/scores	climate coding contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python refactoring verification weather xarray	tennlee
Drop support for Python3.8 and 3.9	bluesky/bluesky	bluesky dataacquisition hackathon python	callumforrester
`docker login` with docker.io creds "successfully" logs-into `registry.fedoraproject.org` then fails to push to `registry-1.docker.io`	containers/podman	Good-First-Issue containers docker kind/bug kubernetes linux oci	rhatdan
Document the option to collapse cells while displaying the first line	jupyterlab/jupyterlab	documentation jupyter jupyterlab	danmcmahill
Show `; attributes...` in plot function docstrings	JuliaPlots/Makie.jl	documentation enhancement gpu graphics julia julia-language plotting visualization	jariji
Document `Makie.spaces()` values	JuliaPlots/Makie.jl	documentation enhancement gpu graphics julia julia-language plotting visualization	jariji
Make the block comment work in Python (and other languages without block comments)	jupyterlab/jupyterlab	enhancement jupyter jupyterlab pkgshortcuts statusNeeds-Discussion	krassowski
Feature: Check if set of vectors constitute a tight frame	vprusso/toqito	feature-request help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
Feature: Bell inequality upper bound for qubits	vprusso/toqito	feature-request help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
Regularize provider/service interface	Qiskit/qiskit-experiments	qiskit	coruscating
Add option to have 'dark' figure output with black background	jgieseler/solarmach	enhancement esa heliophysics spacephysics spaceweather	jgieseler
WGLMakie cannot draw Mesh with Float64 normals.	JuliaPlots/Makie.jl	Makie WGLMakie bug conversions gpu graphics julia julia-language plotting visualization	jacobleft
Make `DataConverter` accept a list of files to convert instead of only a directory	graphnet-team/graphnet	astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch	RasmusOrsoe
Small bug in dynamic completeness calculation	dsavransky/EXOSIMS	bug	turmon
Docstrings - some are missing references (paper or online source describing the metric)	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add Yourself to Our Community Map! :sparkles:	ECP-WarpX/WarpX	component-documentation gpu help-wanted hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Jax version of VAEMixin	scverse/scvi-tools	backlog cite-seq deep-generative-model deep-learning enhancement human-cell-atlas jax scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes	justjhong
parseTH for TH3x	JuliaHEP/UnROOT.jl	cern-root enhancement hacktober hep high-energy-physics julia particle-physics	tamasgal
Modify the extract shorelines to not require transects	SatelliteShorelines/CoastSeg	V3 colab earth-engine jupyter landsat python	2320sharon
Request: Spearman rank correlation	nci/scores	climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation new-metric oceanography pandas python verification weather xarray	nicholasloveday
Duplicate micro-simulations on interior boundaries of macro-domain decomposition	precice/micro-manager	bug coupling macro-micro multiphysics multiscale research-and-development	mathiskelm
User unfriendly behavior of attributes.all when stored	aiidateam/aiida-core	aiida computational-science data-provenance database provenance scheduler ssh type/usability workflow workflow-engine workflows	agoscinski
API docs missing for `read_csv`, `read_fwf` and `read_table`	dask/dask	dask documentation numpy pandas pydata python scikit-learn scipy	fjetter
docs: document nextalign-like use-case	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna docs help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus	ivan-aksamentov
InternalFeatureImportance is in documentation but not implemented	catboost/catboost	big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning model-analysis python r tutorial	mareksimunek
Need CI to test package publishing workflow	precice/micro-manager	coupling macro-micro multiphysics multiscale research-and-development	IshaanDesai
More user friendly yes/no prompt in `verdi computer delete`	aiidateam/aiida-core	aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/verdi type/usability workflow workflow-engine workflows	agoscinski
Additional Preset: Geothermal Brine	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
Add MathJax equation for Murphy Score (in both Continuous and Probability) docstrings	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to isotonic fit docstrings (in each of continuous, probability and processing)	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to ROC (scores.probability.roc_curve_data) docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to FIRM docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add MathJax equation to Diebold Mariano docstring	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	Steph-Chong
Add EnumAttr to the Gradient Dialect for different differentiation methods.	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
Add a function that will be called after the lowering process is finished.	PennyLaneAI/catalyst	autodiff automatic-differentiation frontend jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	erick-xanadu
TODO in `is_separable` check	vprusso/toqito	enhancement matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	purva-thakre
FR: Add ability to change the "reset zoom" binding	JuliaPlots/Makie.jl	Axis Makie enhancement gpu graphics interaction julia julia-language plotting visualization	david-macmahon
Need a chunker for cycles	euroargodev/argopy	argo argo-data argo-floats enhancement help-wanted internals oceanography performance python stale	gmaze
Remove LogoutButton	plotly/dash	P3 bioinformatics charting dash dash-3.0 data-science data-visualization feature finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	AnnMarieW
Add a small figure mode	jgieseler/solarmach	enhancement esa heliophysics spacephysics spaceweather	jgieseler
Investigate `QuaternaryHeap` for shortest-path and other functions	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
util/eccanom zero-size Exception	dsavransky/EXOSIMS	bug help-wanted	turmon
Allow specification of values to be summarised in the _make_summary()-method	jepegit/cellpy	battery chemistry code-improvements data-analysis electrochemistry enhancement opensource physics	morrowrasmus
Refactor common HPMC pair potential features into a base class	glotzerlab/hoomd-blue	conda-forge cuda docker gpu hard-particle hoomd-blue molecular-dynamics monte-carlo-simulation particle-system python simulation singularity task	joaander
`NUM_GPU_DEVICES_PER_NODE` in testing infrastructure	parthenon-hpc-lab/parthenon	amr enhancement high-performance-computing kokkos parthenon	pgrete
Documentation suggests sudo make install	precice/aste		MakisH
Paraview cannot open ASTE output .vtu files	precice/aste		MakisH
ASTE assumes data name Data, ignoring CLI option	precice/aste		MakisH
Option --mesh does not work with a file extension	precice/aste		MakisH
Bars in fraction and square root (LaTeX string) visible even if set to false	JuliaPlots/Makie.jl	Attributes Makie bug gpu graphics julia julia-language plotting text visualization	cyanescent
Update the Structural Alignment section of the Tutorial to include CEAlign	biopython/biopython	Documentation bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment	JoaoRodrigues
Input a bad channel list (3D tools)	CIRADA-Tools/RM-Tools	enhancement	Cameron-Van-Eck
`colorrange` is an invalid attribute for `contourf`	JuliaPlots/Makie.jl	(tri)contour(f) Attributes Makie bug colors gpu graphics julia julia-language plotting visualization	asinghvi17
Migrate PageRank and HITS implementations from `sprs` to `faer`	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	IvanIsCoding
[MNT] Improve chainopy docs	aadya940/chainopy	bayesian-data-analysis bayesian-inference bayesian-statistics data-analysis data-science deep-learning forecasting machine-learning markov-chain markov-model markov-process time-series time-series-analysis	aadya940
Figure out PTE convergence issues	lanl/singularity-eos	bug	jhp-lanl
Layout as list of components does not work with Dash Pages page_container	plotly/dash	P3 bioinformatics bug charting dash data-science data-visualization finance flask gui-framework jupyter modeling plotly plotly-dash productivity python react rstats technical-computing web-app	antonymilne
Add coverage per CDS to output	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	joverlee521
Updated, self-maintained resource to list exhaustively existing remote modules	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Add EOS to python interface	lanl/singularity-eos	enhancement interface	jhp-lanl
Go through and add thumbnails to each tutorial gallery entry	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
Inconsistent warning message logging	tardis-sn/tardis	astrophysics codestyle python radiative-transfer science supernova	DeerWhale
Make better implementations for `fast_array_util.py	tardis-sn/tardis	astrophysics easy python radiative-transfer science supernova	wkerzendorf
Heuristic for cell height should consider preferred text output types	jupyterlab/jupyterlab	bug jupyter jupyterlab	krassowski
stSidebarNav items should be disabled when app is disconnected	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featuremultipage-apps machine-learning priorityP3 python statusconfirmed streamlit typebug	sfc-gh-pfinnigan
Switch to pyproject.toml	multiscale/muscle3		LourensVeen
Improve traceback messages	bluesky/bluesky	bluesky dataacquisition maintenance python user-IO	stan-dot
Apply Classification Methods to Real-Time Collected Experimental Data	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pysimplegui python real-datasets step-response	samirmartins
Programming Arduino Directly from PYDAQ	samirmartins/pydaq	arduino arduino-library enhancement graphical-user-interface national-instruments nidaq nidaqmx pysimplegui python real-datasets step-response	samirmartins
Compatibility with python 3.13 - invalid escape sequence	radis/radis	astrophysics bug closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy 😎.	minouHub
Warnings when building the doc	radis/radis	astrophysics closember combustion exoplanets hitemp hitran infrared plasma plasma-physics radiation spectra spectroscopy todo 😎.	minouHub
Shift cyclostrophic argument to model_kwargs in from_tracks	CLIMADA-project/climada_python	conventions	spjuhel
DOC: fix docstring validation errors for `pandas.Timestamp`	pandas-dev/pandas	Code-Style Docs alignment data-analysis data-science flexible pandas python	natmokval
Mathjax: x and y vs forecast and observed	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
reprojection tutorial	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	nicholasloveday
Dash filename error	fitbenchmarking/fitbenchmarking	Bug Good-first-issue	AndrewLister-STFC
Doc Generation Error - HTTP Error 429	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeBug-Fix	robinroy03
button help hover in sidebar is not fully visible	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.sidebar machine-learning priorityP3 python statusconfirmed streamlit typebug	hagsted
Implement mass matrix in Barker's kernel	blackjax-devs/blackjax	adaptation bayesian-inference enhancement hamiltonian-monte-carlo help-wanted mcmc probabilistic-programming sampling-methods	AdrienCorenflos
Followup documentation for petroff color sequence	matplotlib/matplotlib	Difficulty-Medium Documentation Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
DOC: fix docstring validation errors for pandas.Series	pandas-dev/pandas	Code-Style Docs alignment data-analysis data-science flexible pandas python	natmokval
DOC: fix docstring validation errors for pandas.Timedelta/pandas.TimedeltaIndex	pandas-dev/pandas	Code-Style Docs alignment data-analysis data-science flexible pandas python	natmokval
Family packages in main documentation	qutip/qutip	DOC python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack	pmenczel
Make ITK keywords in PyPI consistent	InsightSoftwareConsortium/ITK	Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation	jhlegarreta
Documentation: Carbonate system tutorial notebook	KingsburyLab/pyEQL	Good-First-Issue docs	rkingsbury
nextclade run with optional dataset tag input	nextstrain/nextclade	clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus	jrotieno
STY/DEV: fix and enable lint rule UP038	scipy/scipy	DX algorithms closember maintenance python scientific-computing scipy	lucascolley
DOCS: Website documentation about solvers is wildly out of date	firedrakeproject/firedrake	documentation	JDBetteridge
[ENH]: Support avif as output format	matplotlib/matplotlib	Good-first-issue New-feature data-science data-visualization gtk matplotlib plotting python qt status-upstream-fix-required tk wx	rotsee
Support trailing commas	finsberg/gotranx	code-generation enhancement gotran help-wanted ode parser parsing	finsberg
Add examples to docstrings	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	nicholasloveday
Add issue templates	heracles-ec/heracles	astronomy cosmology healpix large-scale-structure maintenance python spherical-harmonics	ucapbba
Add a code of conduct	heracles-ec/heracles	astronomy cosmology healpix large-scale-structure maintenance python spherical-harmonics	ucapbba
date_input should be able to specify return type	streamlit/streamlit	data-analysis data-science data-visualization deep-learning developer-tools featurest.date_input machine-learning python streamlit typeenhancement	BobVitorBob
In dark theme the "Add" button in keyboard shortcuts UI is not readable	jupyterlab/jupyterlab	bug jupyter jupyterlab tagAccessibility	krassowski
Allow reversed y-axis on spectrogram plots	jonescompneurolab/hnn-core	computational-modeling eeg enhancement meg neuron-simulator	ntolley
Review docstring and possibly raise a userwarning for pearsonr based on preserve_dims=all	nci/scores	climate contingency-table dask documentation enhancement forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
`qjit(static_argnums=...)` fails when the marked static argument has a default value	PennyLaneAI/catalyst	autodiff automatic-differentiation bug jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	paul0403
Shift default zero phase to epoch of minimum	snad-space/ztf-viewer	enhancement	hombit
`warpx --version`	ECP-WarpX/WarpX	gpu hpsf laser particle-in-cell physics pic plasma research simulation	ax3l
Infinite sheds beam fraction on ground zenith guardrail syntax bug	pvlib/pvlib-python	bug easy help-wanted photovoltaic python renewable-energy renewables solar-energy	mikofski
BUG: Cannot read GDB file using a geometry filter (mask)	geopandas/geopandas	bug geoparquet geospatial pandas python spatial	shiyuning
DOC warnings and other QoL improvements	fury-gl/fury	3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation state-needs-PR	robinroy03
Move straggler test objects into test folders	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
ImportError: cannot import name 'rvmod_for' from partially initialized module 'RV_mod.rvmod' (most likely due to a circular import)	3fon3fonov/exostriker	exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling	RubiscoYHY
DOC: conda-forge `compilers` package now also usable on windows	scipy/scipy	Documentation algorithms closember python scientific-computing scipy	h-vetinari
Dask.Visualize ignoring engine setting	dask/dask	bug dask dataframe numpy pandas pydata python scikit-learn scipy	frbelotto
Add merge rotation patterns for `qml.Rot` and `qml.CRot`	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	paul0403
Rewrite the stats `tohist()` method	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
Change `expected` to `expected_fh` if it is a file handler	tardis-sn/tardis	astrophysics python radiative-transfer science supernova	atharva-2001
Repeated analysis duplicates auto generated manuscript prose	smith-chem-wisc/MetaMorpheus	Bug calibration database-search discovery mass-match proteome proteomics-database-search ptm spectra uniprot	nbollis
add examples to Gallery	xgi-org/xgi	documentation graph-analysis higher-order higher-order-networks hypergraphs network-science simplicial-complexes	maximelucas
Unexpected behaviour if n_samples decreases with iterations	NIFTy-PPL/NIFTy	bug	fmkroci
Implement SWAP gate disentangling at compile time	PennyLaneAI/catalyst	autodiff automatic-differentiation compiler jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	paul0403
cell_id param missing from `run_cell` methods	ipython/ipython	closember data-science hacktoberfest ipython jupyter notebook python repl spec-0	antazoey
New Score Request: Add "percent within X" metric	nci/scores	climate contingency-table dask forecast-evaluation forecast-verification forecasting model-validation new-metric oceanography pandas python verification weather xarray	tennlee
Feature: Convert Kraus operators to the natural representation	vprusso/toqito	feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso
add example with multinomial node.	furrer-lab/abn	bayesian-network binomial categorical-data documentation enhancement gaussian grouped-datasets help-wanted mixed-effects multinomial multivariate poisson structure-learning	matteodelucchi
Add edge collapses to slicers	DavidLapous/multipers	cpp cython enhancement help-wanted icml-2024 multiparameter-persistence neurips-2023 persistent-homology python tda topological-data-analysis	DavidLapous
Enhancement: prevent accidental double-setting of pH	KingsburyLab/pyEQL	Good-First-Issue enhancement	rkingsbury
BUG: `.convert_dtypes(dtype_backend="pyarrow")` strips timezone from tz-aware pyarrow timestamp Series	pandas-dev/pandas	Arrow Bug Dtype-Conversions Localization alignment data-analysis data-science flexible pandas python	jamesdow21
Docs: Add process - focused diagrams	bluesky/bluesky	bluesky dataacquisition documentation enhancement low-priority maintenance python	stan-dot
BUG: `extruded_shallow_water` demo is not tested	firedrakeproject/firedrake	bug testing	connorjward
Add better Matplotlib tests	Qiskit/rustworkx	dag enhancement graph graph-theory help-wanted python rust	IvanIsCoding
Add release notes for 0.16 (and some better documentation)	Qiskit/rustworkx	dag documentation enhancement graph graph-theory python rust	IvanIsCoding
Implement an option to print out instructions in the null device	PennyLaneAI/catalyst	autodiff automatic-differentiation jax jit llvm mlir pennylane python qir quantum quantum-compiler quantum-computing	jay-selby
[Bug]: Poly3DCollection initialization cannot properly handle parameter verts when it is a list of nested tuples and shade is False	matplotlib/matplotlib	Difficulty-Easy Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-mplot3d wx	williamlus
FUTURE BUG: reconsider how we deep-copy path objects	matplotlib/matplotlib	Difficulty-Hard Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk wx	tacaswell
TST: Make test_sql.py parallelizable	pandas-dev/pandas	IO-SQL Testing alignment data-analysis data-science flexible pandas python	WillAyd
Expanded grid_graph functionality	Qiskit/rustworkx	dag enhancement graph graph-theory python rust	awstasiuk
RFE: Allow filtering containers by command	containers/podman	Good-First-Issue containers docker kind/feature kubernetes linux oci	krystalcode
[Bug]: I give an RGB image to imsave but I don't have the right color map!	matplotlib/matplotlib	Difficulty-Easy Good-first-issue data-science data-visualization gtk matplotlib plotting python qt status-confirmed-bug tk wx	zef126
Accessibility: Adding alt text to images in `scores` documentation	nci/scores	climate contingency-table dask documentation forecast-evaluation forecast-verification forecasting help-wanted model-validation oceanography pandas python verification weather xarray	Steph-Chong
Improve automatic periodic boundary detection heuristic	idaholab/moose	C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	GiudGiud
Multiple time integrators don't work when we use AMR.	idaholab/moose	C-Framework Good-first-issue P-normal T-defect amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation	grmnptr
Re-run and seed SBC tutorial	mackelab/sbi	bayesian-inference bug likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	michaeldeistler
Check boundary tasks in examples	parthenon-hpc-lab/parthenon	amr high-performance-computing kokkos parthenon refactor	pgrete
Re-run and seed SBC tutorial	sbi-dev/sbi	bayesian-inference bug likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	michaeldeistler
Improve performance benchmarks	xgi-org/xgi	graph-analysis higher-order higher-order-networks hypergraphs improve network-science simplicial-complexes	nwlandry
ENH: new_alignment.counts_per_pos should use a numba decorated function	cogent3/cogent3	bioinformatics biological-sequence-analysis biology biopython data-science evolution genomics markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics	KatherineCaley
`posterior.to("cpu")` method	mackelab/sbi	bayesian-inference enhancement likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	michaeldeistler
Replace our use of scipy's interpolate.interp1d	nci/scores	climate coding contingency-table dask forecast-evaluation forecast-verification forecasting model-validation oceanography pandas python verification weather xarray	tennlee
`posterior.to("cpu")` method	sbi-dev/sbi	bayesian-inference enhancement likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference	michaeldeistler
[Bug]: `fontsize` in tables not working	matplotlib/matplotlib	Difficulty-Easy Good-first-issue data-science data-visualization gtk matplotlib plotting python qt tk topic-table wx	acgc99
Use `study.ask` in tests instead of `create_new_trial`	optuna/optuna	code-fix contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python	not522
STY: fix and enable lint rule UP031	scipy/scipy	algorithms closember maintenance python scientific-computing scipy	lucascolley
ENH: optimize.root: warn when inner parameters are ignored with `method='krylov'`	scipy/scipy	algorithms closember enhancement python scientific-computing scipy scipy.optimize	lucascolley
`retry_history` method in `RetryFailedTrialCallback` is not tested	optuna/optuna	contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python test	not522
Add `value` for `--format` option in CLI	optuna/optuna	contribution-welcome distributed feature hacktoberfest hyperparameter-optimization machine-learning parallel python	not522
Incorrect units pvlib.ivtools.sdm.fit_desoto	pvlib/pvlib-python	documentation easy help-wanted photovoltaic python renewable-energy renewables solar-energy	RDaxini
Add "See also" to the regex function docstrings	JuliaLang/julia	docs hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific	jariji
Issue with parse time regex dropping 0's on minutes/seconds	sunpy/sunpy	Bug Effort-Low Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest python solar solar-physics sun sunpy time	hayesla
Some introspection about molecular structure	lanl/singularity-eos	enhancement help-wanted	Yurlungur
Implement parseTH for 3D histograms	JuliaHEP/UnROOT.jl	cern-root enhancement hacktober hep high-energy-physics julia particle-physics	tamasgal
Add more "versions" to metadata in start document	bluesky/bluesky	bluesky dataacquisition enhancement metadata python	DiamondJoseph
Pre-commit hook for automatic formatting and linting	vprusso/toqito	matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack	vprusso