✨️ Good First Issues ✨️


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Robust default color scheme ipython/ipython closember data-science hacktoberfest ipython jupyter notebook python repl dimaqq
Add install instructions when dependencies are missing ipython/ipython closember data-science documentation hacktoberfest ipython jupyter notebook python repl shazow
[docs] update make.cmd ipython/ipython closember data-science documentation hacktoberfest ipython jupyter notebook python repl windows Carreau
Fallback to pydoc if site._Helper is not defined ipython/ipython bug closember data-science hacktoberfest ipython jupyter notebook python repl eudoxos
weighted stats class for pandas objects statsmodels/statsmodels comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist jseabold
Add option to project `separation` onto an ellipse astropy/astropy Effort-low Feature-Request Package-novice astronomy astrophysics astropy coordinates python science eteq
Documention of scipy.sparse.linalg.eigsh does not match ARPACK for generalized eigenvalue problem (Trac #1587) scipy/scipy Documentation Migrated-from-Trac algorithms closember defect prio-normal python scientific-computing scipy scipy.sparse.linalg scipy-gitbot
diagnostic plots for regression - another version statsmodels/statsmodels comp-graphics count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis wishlist josef-pkt
Improve the example scripts NeuralEnsemble/PyNN enhancement apdavison
improve interpolation in IERS data astropy/astropy Effort-low Feature-Request Package-novice astronomy astrophysics astropy python science time mhvk
Test coverage for scipy.signals.windows needs improvement scipy/scipy algorithms closember python scientific-computing scipy scipy.signal task ankit-maverick
Is there a function to generate a train set and test set from DataFrame? statsmodels/statsmodels count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing pandas-integration prediction python regression-models robust-estimation statistics timeseries-analysis wishlist cloga
classification performance measures statsmodels/statsmodels comp-discrete count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh jseabold
model comparison notebook statsmodels/statsmodels FAQ comp-docs count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis jseabold
Add (pred_table) to appropriate GLM results statsmodels/statsmodels comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh wishlist jseabold
Implement "Beer–Lambert Law" support. colour-science/colour API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
Implement support for "Mie Scattering". colour-science/colour API Feature Good-First-Issue P3 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
Allow tuples/iterables as convenience for setting contraints on model parameters astropy/astropy Effort-low Feature-Request Package-novice astronomy astrophysics astropy modeling python science embray
Clarify Mathieu function documentation scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.special cimatosa
modify the appearance of the ACF PLOT function when using subplots statsmodels/statsmodels comp-graphics comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh aviPython
Add FIR filter examples to scipy.signal documentation scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.signal task rgommers
ENH: More informative error message in fit_regularized Hessian inversion fail statsmodels/statsmodels count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis jseabold
pairwise_tukeyhsd - retrieve "reject" values statsmodels/statsmodels comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction prio-high python regression-models robust-estimation statistics timeseries-analysis type-enh arnaldorusso
Reading and writing Excel spreadsheets in the unified table interface astropy/astropy Enhancement Package-novice astronomy astrophysics astropy python science table unified-io hamogu
Add examples to docstrings pvlib/pvlib-python documentation easy help-wanted photovoltaic python renewable-energy renewables solar-energy testing bmu
Comparison operator overloading doesn't work with sparse matrices scipy/scipy algorithms closember enhancement python scientific-computing scipy scipy.sparse SteveDiamond
Add Kobayashi neuron model NeuralEnsemble/PyNN enhancement apdavison
Implement support for "BFD (l:c) colour-difference" computations. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
ENH: weightstats CompareMeans add from_data and summary methods statsmodels/statsmodels comp-stats count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh josef-pkt
Remove unused variational::base_family class stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan bob-carpenter
Log on disk path of files served when using --debug jupyter/notebook closember jupyter jupyter-notebook notebook Carreau
Add API documentation for public class attributes RaRe-Technologies/gensim Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec cscorley
Support retrieving the current value of state variables without recording NeuralEnsemble/PyNN enhancement apdavison
Do we remember why utils.io.IOStream exists? ipython/ipython closember data-science hacktoberfest ipython jupyter notebook python repl takluyver
Clarify definition of preconditioner for sparse linear system solvers scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.sparse.linalg anntzer
Implement support for "JCAMP-DX" and "CxF" xml file formats. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets Ron024
ipython Sphinx directive executes code when excluded by only, ifconfig ipython/ipython closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl cgranade
Improve test coverage by moving self-tests biopython/biopython bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment peterjc
Add missing methods to Series dask/dask dask dataframe numpy pandas pydata python scikit-learn scipy mrocklin
array.to_hdf5(compute=False) doesn't return delayed value dask/dask array dask io numpy pandas pydata python scikit-learn scipy nirizr
Treat subprocess errors as exceptions ipython/ipython closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl minrk
Return Timestamps should take pandas series or pandas index SDXorg/pysd enhancement JamesPHoughton
test on pypy once pypy implements supported Python 3 ipython/ipython closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl minrk
add poisson_log_lcdf and poisson_log_lccdf functions stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan davharris
feature request: redirect magic's result to pager ipython/ipython closember data-science hacktoberfest ipython jupyter notebook python repl taoluo
Convergence information being displayed during ARIMA.fit() regardless of disp value statsmodels/statsmodels comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis philipobrien
Test Random Functions SDXorg/pysd JamesPHoughton
Deprecate record.database_letters, record.query_letters biopython/biopython From-Redmine bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment vincentdavis
make 'snake' documentation clearer bluesky/bluesky bluesky dataacquisition documentation python tacaswell
better linking from api docs to examples bluesky/bluesky bluesky dataacquisition documentation python tacaswell
More categorical and numeric split types for decision trees mlpack/mlpack c-methods c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request rcurtin
BleiCorpus after serialize cannot be loaded RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec vincentmajor
Standardize error handling mlpack/mlpack c-core c-methods c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request rcurtin
Documentation regarding input/output options mosdef-hub/foyer atom-typing disseminating-forcefields documentation force-field foyer molecular-dynamics molecular-simulation python ctk3b
DOC: Add "Examples" to docstrings scipy/scipy Documentation algorithms closember python scientific-computing scipy task WarrenWeckesser
Dual Shapes for Convex Polyhedra glotzerlab/coxeter computational-geometry enhancement geometry physics polygons polyhedra shapes bdice
MSA functions simd-everywhere/simde GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
LinearLSQFitter cannot fit compound models astropy/astropy Docs Effort-low Package-novice astronomy astrophysics astropy modeling python science jehturner
'ConcatenatedDoc2Vec' object has no attribute 'corpus_count' RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec jasminezz
Implement Asymmetric Laplace Distribution stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics new-function stan heroxbd
cygdb tests are failing cython/cython Debugger Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python lindsayad
Use pass-by-value instead of two overloads for copy and move mlpack/mlpack c-methods c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request rcurtin
FiniteAutomaton : declare a factory for intersection, etc. chocoteam/choco-solver constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver cprudhom
New functionality: correlated discretized RVs econ-ark/HARK Dolo-Integration Expertise-Prob-and-Stats Function-Distributions help-wanted mnwhite
proper check for filename before calling subprocess RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec prakhar2b
bivariate normal cdf stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature new-function stan bob-carpenter
minimal training time benchmark catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning planned python r tutorial szilard
multiple functions from scipy.special do not work with quantities astropy/astropy Docs Effort-low Feature-Request Hacktoberfest Package-novice astronomy astrophysics astropy python science units namurphy
Add random tests for custom equality Martinsos/edlib alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment Martinsos
Create periodogram for Epoch folding StingraySoftware/stingray GSoC astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest low-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries matteobachetti
Improving computational time in LDASeqModel RaRe-Technologies/gensim Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec Diego999
Implementation of scipy.integrate.simps dask/dask array dask numpy pandas pydata python scikit-learn scipy Joshuaalbert
DOC: add additional gallery examples geopandas/geopandas documentation plotting jorisvandenbossche
Check what's the reason to use double-precision in topic models RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp performance python topic-modeling word-embeddings word-similarity word2vec menshikh-iv
Add a tests for our tests helpers dask/dask dask numpy pandas pydata python scikit-learn scipy TomAugspurger
Implement support for CIELab2000HL. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
Recommend a new default value of gravity.abs_tol AMReX-Astro/Castro adaptive-mesh-refinement amr astrophysical-simulation astrophysics castro cfd gravity help-wanted hydrodynamics pde radiation reactions study maxpkatz
Add windows command line support to aligner Martinsos/edlib alignment-path bioinformatics c-plus-plus edit-distance enhancement levehnstein-distance library python sequence-alignment randrick
Function to check GFF miRTop/mirtop formatter gff help-wanted internal isomirs mirna smallrna-seq lpantano
Implement support for "CGATS" file format. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
verdi setup could automatically set up localhost aiidateam/aiida-core aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/config type/feature-request workflow workflow-engine workflows ltalirz
List optional cytoolz dependency dask/dask dask numpy pandas pydata python scikit-learn scipy jakirkham
How to contribute documentation to COBRApy? opencobra/cobrapy biochemistry bioinformatics cell-design cobra computational-biology docs enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python question sbml sbml-model sbml-simulation strain-engineering systems-biology natJimenez
Cygdb not working with recent virtualenvs cython/cython Debugger big-data c cpp cpython cpython-extensions cython help-wanted performance python BertrandBordage
Improvements of IntVar Views chocoteam/choco-solver constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver arnaud-m
Ship `cython.py` in a separate package cython/cython big-data c cpp cpython cpython-extensions cython help-wanted performance python scoder
Mass Luminosity Relationship should be upated dsavransky/EXOSIMS enhancement help-wanted dsavransky
deprecate int_step stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics bug documentation stan bob-carpenter
sparse LU decomposition does solve with complex right-hand side scipy/scipy Documentation algorithms closember defect python scientific-computing scipy scipy.sparse.linalg sebglane
Composition of Search Strategy with different limit chocoteam/choco-solver constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp help-wanted java solver bourreauEric
Explore gphoto2 CAPTURECOMPLETE event panoptes/POCS Hardware-Testing astronomy citizen-science exoplantes gphoto2 panoptes python telescopes wtgee
Confusing "TypeError: '<' not supported between … 'str' and 'int'" when doc-tag not present for `most_similar()` RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec souveekbose
Consider reading temperature from CPU, using to control computer box fan panoptes/POCS arduino astronomy citizen-science exoplantes panoptes python telescopes jamessynge
Argument types for MathFunctions sxs-collaboration/spectre enhancement help-wanted nilsdeppe
Properly document all kwargs for POCS class panoptes/POCS Documentation astronomy citizen-science exoplantes panoptes python telescopes wtgee
Model calculation is not able to read features from stdin catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial vpd
Add an 'event' command bluesky/bluesky bluesky dataacquisition python danielballan
Hardware modifications log panoptes/POCS Enhancement astronomy citizen-science exoplantes panoptes python telescopes wtgee
Handle instrument calibration uncertainties for astrometry sblunt/orbitize enhancement semaphoreP
Get horizon/obstructions from image panoptes/POCS Enhancement astronomy citizen-science exoplantes panoptes python scheduler telescopes wtgee
Add column to name the file during `stats` sub-command miRTop/mirtop formatter gff help-wanted internal isomirs mirna smallrna-seq lpantano
support ggplot style figures for stats command miRTop/mirtop enhancement formatter gff help-wanted isomirs mirna smallrna-seq lpantano
Implement DESeq2 like normalization miRTop/mirtop formatter gff help-wanted internal isomirs mirna smallrna-seq lpantano
Account for field of view in horizon constraint panoptes/POCS astronomy citizen-science exoplantes panoptes python scheduler telescopes wtgee
Function to parse queries and apply to the GFF file miRTop/mirtop formatter gff help-wanted internal isomirs mirna smallrna-seq lpantano
Dataset Collection ynop/audiomate audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition ynop
generate validation data from ROOT (based on validation/data/*.json) scikit-hep/pyhf asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow lukasheinrich
CLI for ANN mlpack/mlpack c-binding c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request arjunmenon
ENH/REF GLM simplify computation if is_canonical statsmodels/statsmodels comp-genmod count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh type-refactor josef-pkt
Pythran fallback not used for numpy call cython/cython Pythran big-data c cpp cpython cpython-extensions cython enhancement performance python serge-sans-paille
fill() method for DeviceNDArray numba/numba CUDA compiler cuda feature_request llvm numpy parallel python seibert
Python wrappers are not profiled separately when binding=True cython/cython Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python mhsmith
Add tutorial on Dirichlet Process Mixture Models pyro-ppl/pyro Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference fritzo
Coercing a sliced C array to Python should create a list cython/cython Cython-Language-Feature Type-Analysis big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python scoder
Use scipy.stats functions for defining distributions lanl/PyBNF enhancement low-priority ryants
Implement support for "A Perception-based Color Space for Illumination-invariant Image Processing". colour-science/colour API Feature Good-First-Issue Help-Wanted P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets TFiFiE
Add stats output to multiqc miRTop/mirtop enhancement formatter gff help-wanted isomirs mirna smallrna-seq lpantano
Cannot load codemirror mode dynamically vatlab/sos-notebook enhancement help-wanted jupyter-kernels BoPeng
Create a Map Differential Rotation example sunpy/sunpy Effort-Medium Examples Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest physics python solar solar-physics sun sunpy nabobalis
Improve documentation dicompyler/dicompyler-core dicom dicom-rt dvh hacktoberfest help-wanted python radiation-oncology radiation-physics bastula
Speed up f-string float formatting cython/cython Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python scoder
measures param for grid search and cross_validate should support callables NicolasHug/Surprise enhancement factorization machine-learning matrix recommendation recommender svd systems NicolasHug
using gnulib instead of some compatibility hacks gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
EXECUTE: support for the third argument (quiet execution) gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
implement CDF_* routines using NASA CDF lib gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
implement color_quan using magick_quantize? gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
ADD JSON_PARSE gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot priority! programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
Add support for saving and restoring procedures gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python save-files scientific-computing scientific-visualization slayoo
Testsuite change from procedures to functions gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
COMPUTE_MESH_NORMALS gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
test_resolve_routine fails (first of all, it fails with IDL) gnudatalanguage/gdl Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization opoplawski
Slice by 0-dimensional np.array dask/dask array dask numpy pandas pydata python scikit-learn scipy crusaderky
reimplement MEMORY (at least for 64-bit Linux) using wait() calls gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
input conversion reading string (or files?) with windows-style line ends ("\r\n") gnudatalanguage/gdl antlr astronomy bug c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
TRIRED gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
Speed up method calls by avoiding bound method instantiation cython/cython Optimization big-data c cpp cpython cpython-extensions cython help-wanted performance python scoder
plot functionality lanl/PyBNF enhancement low-priority ryants
Automaticly deduce cat_features from DataFrame catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial wingrime
Doc for objects that inherit from BaseCoordinateFrame is messy astropy/astropy Docs Effort-low Package-novice astronomy astrophysics astropy coordinates python science dstansby
Test all the Jupyter notebooks in the CI scikit-hep/pyhf asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
GAN Inference pyro-ppl/pyro bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch question variational-inference sameerkhurana10
Wrong parameter distributions from DREAM lanl/PyBNF bug emitra17
Install hdf5 as external library with fortran and mpi spack/spack build-tools documentation help-wanted hpc linux macos package-manager python radiuss scientific-computing spack JohnWGrove
ENH: Add rsquared and variants to state space models statsmodels/statsmodels comp-tsa comp-tsa-statespace count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh ChadFulton
copy_from_remote_to_remote question aiidateam/aiida-core aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/documentation topic/transports type/task workflow workflow-engine workflows KimBenjaminTang
Small improvements to the LightSource class qpv-research-group/solcore5 enhancement hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Radiative coupling and tunnel junctions qpv-research-group/solcore5 enhancement hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Rigorous models for tunnel junctions qpv-research-group/solcore5 Hacktoberfest enhancement hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Derived properties qpv-research-group/solcore5 enhancement hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Test on grids with Gauss points sxs-collaboration/spectre enhancement nilsvu
linter "did you mean..." conda-forge/conda-smithy continuous-integration hacktoberfest linter CJ-Wright
Add NumPy's kron for Dask Arrays dask/dask array dask numpy pandas pydata python scikit-learn scipy jakirkham
Make nicer display of non edit view of document ropenscilabs/qcoder enhancement help-wanted r r-package rstats shiny unconf unconf18 elinw
Dask Collections API compatibility dask/dask dask numpy pandas pydata python scikit-learn scipy TomAugspurger
Find bugs or unclear man pages in docs miRTop/mirtop formatter gff help-wanted isomirs mirna smallrna-seq lpantano
help with the header of sRNAbench miRTop/mirtop formatter gff isomirs mirna smallrna-seq lpantano
Add to summary tab ropenscilabs/qcoder enhancement hacktoberfest r r-package rstats shiny unconf unconf18 elinw
integrate mirtop into #galaxy miRTop/mirtop enhancement formatter gff help-wanted isomirs mirna smallrna-seq lpantano
PAML run method docstrings - return value biopython/biopython Documentation bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment peterjc
Benchmark ORC reader dask/dask dask dataframe io needs-info numpy pandas pydata python scikit-learn scipy jcrist
Package/Installer for Windows LiberTEM/LiberTEM data-processing electron-microscopy help-wanted image-processing python windows sk1p
Package/Installer for Mac OS X LiberTEM/LiberTEM data-processing electron-microscopy help-wanted image-processing python sk1p
Clean up code: `.str().length()` stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup stan syclik
Make sure that Map and TimeSeries are able to take file handlers and a filetype sunpy/sunpy Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest map python solar solar-physics sun sunpy timeseries Cadair
Crash when bounds of prange() are Python objects cython/cython Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python scoder
Apply the same transformation to image and mask in elastic_transform ? DLTK/DLTK cnn data-science deep-learning deep-neural-networks dltk dltk-model-zoo enhancement help-wanted machine-learning medical medical-image-processing medical-imaging ml neural-network neural-networks neuroimaging python tensorflow Jing-He
Refactor parsing of time formats to use astropy custom formats sunpy/sunpy Effort-High Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest python solar solar-physics sun sunpy time vn-ki
Unit test for `get_phase_lag` and `get_mean_phase_difference` functions StingraySoftware/stingray astronomy astrophysics blackhole blackholes data-analysis enhancement fourier-analysis fourier-transform hacktoberfest medium-priority neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries swapsha96
Better user-facing messages on invalid IDs kblin/ncbi-acc-download enhancement help-wanted areejalsheikh
DOC: avoid iteration for light travel time of lots of objects astropy/astropy Docs Effort-low Package-novice Performance astronomy astrophysics astropy python science time StuartLittlefair
stdint compat for windows cython/cython Code-Generation Library big-data c cpp cpython cpython-extensions cython help-wanted performance python jbrockmendel
Add unbounded pointer depth in pure Python 3.7+ cython/cython big-data c cpp cpython cpython-extensions cython help-wanted performance python kne42
Crash if certain non-ascii characters in model file. lanl/PyBNF minor emitra17
Add documentation on cli commands (including piping) scikit-hep/pyhf asymptotic-formulas closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Filebrowser improvements LiberTEM/LiberTEM GUI data-processing electron-microscopy enhancement image-processing python sk1p
Special cases in iterable unpacking cython/cython Python-Semantics big-data c cpp cpython cpython-extensions cython help-wanted performance python scoder
multiple usage of same keyword (IDL --> duplicate keyword) gnudatalanguage/gdl Low-priority antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization alaingdl
Output file symmy596/SurfinPy density-functional-theory thermodynamic-properties symmy596
Move pointing logic out of state panoptes/POCS State-Machine astronomy citizen-science exoplantes panoptes python telescopes wtgee
Least squares fit to speed up sampler sblunt/orbitize enhancement help-wanted sblunt
Use MakeString to instead of stringstream where possible sxs-collaboration/spectre enhancement nilsdeppe
when ~ncores=1, Parmap should not fork rdicosmo/parmap Good-first-issue enhancement UnixJunkie
Test all public methods of classes (mainly pdf.Model) scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow lukasheinrich
Document the container types numba/numba compiler cuda doc easy feature_request llvm numpy parallel python stuartarchibald
Print what files you created when using -v mode kblin/ncbi-acc-download enhancement help-wanted tseemann
Make sure testing is covering entire state machine panoptes/POCS State-Machine Testing astronomy bug citizen-science exoplantes panoptes python telescopes wtgee
Improve code coverage ropensci/jstor hacktoberfest help-wanted jstor peer-reviewed r r-package rstats text-analysis text-mining tklebel
generate quality circuit diagrams ECSHackWeek/impedance.py ECS-Hack-Week battery corrosion electrochemistry fuel-cell impedance lithium-ion mdmurbach
Check data types for SONATA export NeuralEnsemble/PyNN sonata apdavison
Handle spatial information when importing SONATA networks NeuralEnsemble/PyNN sonata apdavison
Wrap coordinates into fractional coordinates mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python mattwthompson
Standardise our docstring convention on Time inputs sunpy/sunpy Documentation Effort-Medium Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy hacktoberfest python solar solar-physics sun sunpy Cadair
Explanations within the examples qpv-research-group/solcore5 hacktoberfest help-wanted photovoltaic python semiconductor solar-cells dalonsoa
Feature Request: GPUOptions for Go binding tensorflow/tensorflow deep-learning deep-neural-networks distributed machine-learning ml neural-network python statcontribution-welcome tensorflow typefeature mattn
[FR] Error messages should be more specific pyro-ppl/pyro bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference warnings-&-errors fritzo
Call for User-Contributed Examples and Tutorials! pyro-ppl/pyro Examples bayesian bayesian-inference deep-learning documentation help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference martinjankowiak
Exposing mu to the services (stepsize warmup) stan-dev/stan algorithm bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan Tuxonomics
IPython directive should strip ansi escape sequence from output. ipython/ipython closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl Carreau
Add tests for code2 and code4 validation (with additional checks on code4's alpha0) scikit-hep/pyhf asymptotic-formulas closember cls docs feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Lint error on python version constraint no-noarch conda-forge/conda-smithy continuous-integration hacktoberfest linter CJ-Wright
MCMC return autocorrelation time sblunt/orbitize enhancement semaphoreP
Support `numpy.tile` numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
Set `DATAPATH` for tests healpy/healpy Good-first-issue zonca
SOBEL & clang : many complains; tests mising for SOBEL, PREWITT & ROBERTS gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization alaingdl
Document NUMBA_CACHE_DIR numba/numba Task caching compiler cuda doc llvm numpy parallel python sklam
Target Field names cannot be all numbers panoptes/POCS astronomy bug citizen-science exoplantes panoptes python telescopes wtgee
Allow user to choose parser in get_spec and get_metadata ropensci/lightr Type-enhancement file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy Bisaloo
Add more options to the dictionary ropenscilabs/gendercoder enhancement gender-diversity help-wanted ozunconf18 r r-package rstats unconf ekothe
Implement Support for "Hermite EETF" as per "BT.2390-4". colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets sobotka
Use Coordinates tag to get rid of template parameters in Domain tags sxs-collaboration/spectre enhancement nilsvu
Cache constant frozen-sets cython/cython Code-Generation Optimization big-data c cpp cpython cpython-extensions cython performance python scoder
SBML timeout not supported if PyBNF installed through PyPI lanl/PyBNF enhancement emitra17
Add option for auto None & nan imputation for categorical features catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial chanansh
Post an issue andyphilips/dynamac ardl r stata time-series time-series-analysis andyphilips
Improve the Python leapfrog integrator jobovy/galpy astronomy astrophysics astropy-affiliated dynamics enhancement help-wanted low-priority physics pinned python scientific-computing jobovy
Work towards mocking all the online tests in SunPy sunpy/sunpy Effort-Medium Good-First-Issue Package-Novice Priority-Medium Tests astronomy astropy hacktoberfest python solar solar-physics sun sunpy Cadair
Fix remote modules' PyPI documentation long description InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation jhlegarreta
silence warnings PDBConstructionWarning in test_PDB_StructureAlignment.py biopython/biopython Testing bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment peterjc
Batching Gaussian Processes pyro-ppl/pyro bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference mileslucas
Add boundary optimized operators of Mattsson, Almquist, and van der Weide ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Document what is Mouse.left what is Mouse.down what is DragEnum etc. JuliaPlots/Makie.jl Makie documentation gpu graphics julia julia-language plotting visualization Datseris
Add top menubar from astropy.org astropy/astropy Docs Effort-low Package-novice astronomy astrophysics astropy python science sprint bsipocz
[Docs?] Numba creates multiple Python objects for an object returned more than once numba/numba compiler cuda doc easy llvm numpy parallel python asodeur
Benchmark scattering mask data vs transmitting pickled mask factories LiberTEM/LiberTEM data-processing electron-microscopy enhancement future image-processing python uellue
GPU modules are listed as available even if `ITK_USE_GPU` is `OFF` InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure fbudin69500
plot_mesh.py is undocumented in Wiki and might not show plot PrincetonUniversity/athena bug documentation visualization felker
Add warnings about "obviously unintended" code cython/cython Error-Reporting big-data c cpp cpython cpython-extensions cython feature help-wanted performance python scoder
Intuitively manage column-wise WCS coordinates astropy/astropy Docs Effort-low Package-novice astronomy astrophysics astropy coordinates io.fits python science wcs matteobachetti
Implement copy_to_host() for negative strided array numba/numba CUDA compiler cuda feature_request llvm numpy parallel python sklam
Move constexpr math functions sxs-collaboration/spectre enhancement nilsdeppe
Raise an exception if a callback is registered _after_ app start? plotly/dash bioinformatics charting dash data-science data-visualization devtools error-messages finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app chriddyp
Document LabelObject perimeter computations InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation blowekamp
Wild Bootstrap lanl/PyBNF enhancement emitra17
convolve_fft defaults and documentation astropy/astropy Docs Feature-Request Hacktoberfest astronomy astrophysics astropy convolution python science astromark
Overload the stream insertion operator for types that are missing it InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure jhlegarreta
Parse strings as multi-element data structures in tests InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement typeInfrastructure jhlegarreta
Add documentation for class attributes to docstrings duetosymmetry/qnm black-holes general-relativity numerical-methods physics python scientific-computing duetosymmetry
Regressing out genes scverse/scanpy Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data joshuahwu
Raise Warning if the Capacity Array is Not Set But `mapc2p` is clawpack/pyclaw feature finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno mandli
Speed up relative re-imports into absolute imports cython/cython Code-Generation Optimization big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python scoder
Uninitialized member variables InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeBug jhlegarreta
CI testing with different random seeds mlpack/mlpack c-build-system c-plus-plus c-testing deep-learning hacktoberfest machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-added-feature rcurtin
Add support for `np.matmul` numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
Bad error messages in ClassifierChain on multioutput multiclass scikit-learn/scikit-learn data-analysis data-science machine-learning modulemultioutput python statistics amueller
Embedded signature doc behavior for classes different from regular Python cython/cython Cython-Language-Feature big-data c cpp cpython cpython-extensions cython enhancement help-wanted performance python david-cortes
"cannot determine Numba type" when calling AOT-compiled function from AOT-compiled function numba/numba AOT bug compiler cuda doc llvm numpy parallel python nmgeek
Cythonize/Cython compilation fails to import/recognize `.pxd` from external modules that only have `__init__.so` cython/cython Build-System big-data c cpp cpython cpython-extensions cython enhancement performance python ghost
jit all the functions which are slow einsteinpy/einsteinpy general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation performance perihelion space-physics shreyasbapat
oldmin/oldmax aren't handled properly InsightSoftwareConsortium/ITK Good-first-issue areaIO cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeEnhancement tashrifbillah
Add quantitative tests to `itk::FastMarchingImageFilterBase`. InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage jhlegarreta
Add support for NumPy `insert` numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
cache files should be aware of EXOSIMS version dsavransky/EXOSIMS enhancement help-wanted dsavransky
Reword documentation lucydot/effmass documentation lucydot
Fix Link lucydot/effmass documentation lucydot
deduplication of louvain and leiden doc scverse/scanpy Area---Documentation-📒 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data fbnrst
Random seed should be encoded as a random generator object in SimulatedUniverse dsavransky/EXOSIMS enhancement help-wanted dsavransky
Cython mishandles PEP-3135 __class__ cell in methods cython/cython P-blocker Python-Semantics big-data c cpp cpython cpython-extensions cython defect help-wanted performance python marginalhours
Warning spam from pybnf dependencies lanl/PyBNF emitra17
Make `UpdateRequiredITKVersionInFiles.sh` fetch files automatically InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure jhlegarreta
error while saving geodataframe as mapinfo .tab file geopandas/geopandas ghost
numpy isin numba/numba compiler cuda feature_request llvm numpy parallel python machineko
Inconsistency in finding blocked reactions opencobra/cobrapy biochemistry bioinformatics cell-design cobra computational-biology flux metabolic-models metabolic-network metabolism modeling needs-information python sbml sbml-model sbml-simulation strain-engineering systems-biology hvdinh16
potential Doc2Vec feature: reverse inference, to synthesize doc/summary words RaRe-Technologies/gensim Hacktoberfest data-mining data-science difficulty-medium document-similarity fasttext feature gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling wishlist word-embeddings word-similarity word2vec gojomo
dagp_plot is not scaleable flyaflya/causact bayesian-inference dags enhancement help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package flyaflya
Make meaningfulLabels = FALSE argument work in dag_greta() flyaflya/causact bayesian-inference dags help-wanted posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package flyaflya
Recipe documentation mosdef-hub/mbuild Recipes documentation enhancement maintenance mbuild molecular-dynamics molecular-simulation molecule-builder python mattwthompson
Standardize documentation in `Utilities` scripts InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation jhlegarreta
Add version changed for API changes astropy/astropy Docs Hacktoberfest Package-novice astronomy astrophysics astropy python science taldcroft
Breaking change: allow input decks to work for both 2D and 3D ECP-WarpX/WarpX gpu laser particle-in-cell physics pic plasma research simulation RemiLehe
Consider pipx as recommended installation method scikit-hep/pyhf asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
Linter should hint about wrapping text conda-forge/conda-smithy Hacktoberfest continuous-integration enhancement hacktoberfest help-wanted linter isuruf
Systematic breakdown table scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
[Discussion] Cool stuff with Makie JuliaPlots/Makie.jl documentation gpu graphics julia julia-language planning plotting visualization asinghvi17
Importing Keras when loading dataset mirapy-org/mirapy astronomy autoencoder bug classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries swapsha96
Clean up clang macros InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCompiler typeStyle dzenanz
Document how to get complete document distribution from LDA RaRe-Technologies/gensim Hacktoberfest data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec Antupis
meta-issue: All NumPy functions with no implementation numba/numba compiler cuda easy feature_request good-second-issue llvm numpy parallel python stuartarchibald
look at merge cycler and make sure it works with any combination of pseudo-axis bluesky/bluesky bluesky dataacquisition python awalter-bnl
Add references to docstrings hoechenberger/questplus doc enhancement psychology psychophysics hoechenberger
Normalization edge case lanl/PyBNF emitra17
Finish GUI integration lanl/PyBNF enhancement emitra17
Moving from autograd to jax mirapy-org/mirapy astronomy autoencoder classification curve-fitting deep-learning enhancement htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries ericmjl
Test coverage of special parameterizations netsiphd/netrd enhancement sdmccabe
Installation instructions should ensure that the terminal preferred encoding is UTF8 aiidateam/aiida-core aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows giovannipizzi
Test delve on Keras linear regression problem delve-team/delve convolutional-neural-networks deep-learning layer-saturation model-training neural-dynamics pruning pytorch training-monitor visualization JustinShenk
Testing trained models life VGG, Inception etc with HTRU1 dataset mirapy-org/mirapy astronomy autoencoder classification curve-fitting deep-learning htru1 image-reconstruction keras machine-learning ogle variable-stars x-ray-binaries swapsha96
Flattening Dask Arrays without spreading out chunks dask/dask array dask numpy pandas pydata python scikit-learn scipy jakirkham
Address Todo items in AzimuthElevationToCartesianTransform InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDesign hjmjohnson
Consider adding __repr__ methods to all classes scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
Add predict_proba for CatBoostClassifier in Java API catboost/catboost JVM-Applier big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial ancasarb
Cython ValueError: no signature found for builtin cython/cython Code-Generation big-data c cpp cpython cpython-extensions cython defect help-wanted performance python zyukyunman
Remove similar code for command-line argument handling idaholab/moose Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
ONNX export doesn't support categorical features catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial wboleksii
bug in gensim.summarization.mz_entropy.mz_keywords RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec bbaranow
Use type hints with single dispatch in time sunpy/sunpy Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy time Cadair
Wall time based default checkpoint writing idaholab/moose C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
Improve PythonUnitTest test separation option idaholab/moose C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Improve ApplyScriptToRemotes.sh script's robustness InsightSoftwareConsortium/ITK Good-first-issue areaRemotes cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure jhlegarreta
WordEmbeddingsKeyedVectors.add() doesn't clear `vectors_norm`, causing `IndexError` on later `most_similar()` RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-easy document-similarity fasttext gensim impact-MEDIUM information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec gojomo
lsmagic returns JSON which makes for awkward UX in JupyterLab ipython/ipython closember data-science hacktoberfest ipython jupyter notebook python repl fperez
Plots.jl recipes JuliaPlots/Makie.jl enhancement gpu graphics julia julia-language plotting visualization asinghvi17
Implement mean for Series[datetime64[ns]] and DatetimeIndex dask/dask dask dataframe numpy pandas pydata python scikit-learn scipy TomAugspurger
Type highlighting in `inspect_types` numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
Support numpy.isnan and numpy.isnat in cuda.jit kernels numba/numba CUDA compiler cuda feature_request llvm numpy parallel python kkraus14
Consistent style for references to external material sunpy/sunpy Documentation Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy wafels
ElementVariablesDifferenceMax could be refactored to use SamplerBase idaholab/moose C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
WikiCorpus.filter_wiki/remove_markup don't remove heading-markup RaRe-Technologies/gensim Hacktoberfest bug data-mining data-science difficulty-medium document-similarity fasttext gensim help-wanted impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec 0x0badc0de
Specifying __bool__ and __nonzero__ cython/cython Type-Analysis big-data c cpp cpython cpython-extensions cython enhancement performance python rinslow
Resurrect and finish stale PRs mlpack/mlpack c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-feature-request rcurtin
Documentation example doesn't work cython/cython Documentation big-data c cpp cpython cpython-extensions cython performance python realead
hasMaterialProperty depends on order in the input file idaholab/moose C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation tophmatthews
ImageDiff and Structrual Similarity idaholab/moose C-MOOSE-Scripts Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
use array_like instead of numeric/array-like pvlib/pvlib-python documentation help-wanted photovoltaic python renewable-energy renewables solar-energy wholmgren
AAVSO Light Curves snad-space/ztf-viewer enhancement hombit
Create a list of reader/writer names ynop/audiomate audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager enhancement music noise speech speech-recognition ynop
add test for case-insensitive logic in DUStructDesc::AddTag gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
ElementGenerator test improvement idaholab/moose C-Framework C-Meshing Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
Use SI units everywhere in the WarpX documentation ECP-WarpX/WarpX component-documentation gpu laser particle-in-cell physics pic plasma research simulation RemiLehe
ENH: Improvements to new ARIMA-type estimators statsmodels/statsmodels comp-tsa count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis type-enh ChadFulton
Consider astroalign for tracking corrections panoptes/POCS Enhancement astronomy citizen-science exoplantes mount panoptes python telescopes wtgee
Bounds checking for shapes in GUI LiberTEM/LiberTEM GUI data-processing electron-microscopy image-processing python uellue
Document reproducibility guarantees lmcinnes/umap 0.4 dimensionality-reduction documentation machine-learning topological-data-analysis umap visualization tomwhite
Storage class in MOOSEDocs should have a late initialization routine. idaholab/moose C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Add aliases for common accessors scikit-hep/pyhf API asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch refactor scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Automate generation of the `SkyCoord` tab-completion documentation astropy/astropy Docs Effort-low Hacktoberfest Package-novice astronomy astrophysics astropy coordinates python science eteq
Add coverage to pdf.Model.expected_auxdata and pdf.Model.mainlogpdf scikit-hep/pyhf asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests matthewfeickert
ENH: Update `qcircuit` version for LaTeX circuit visualization and consider `Quantikz` qutip/qutip ENH Q&A code python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack nathanshammah
Type Annotations qpv-research-group/solcore5 enhancement hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Check urls of datasets in code and documentation ynop/audiomate audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager help-wanted music noise speech speech-recognition ynop
Broken link to "Edit on Github" in ipython documentation ipython/ipython closember data-science documentation hacktoberfest ipython jupyter notebook python repl btel
Add sentence on how to decide which packages to use ropensci/stats19 r r-package rstats Robinlovelace
Add unit test for pattern.apply() mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python uppittu11
Add joining exercise to the stats19 exercises tutorial ropensci/stats19 r r-package rstats Robinlovelace
Park unless pointing withing threshold panoptes/POCS State-Machine astronomy citizen-science exoplantes panoptes python telescopes wtgee
Add realistic spacecraft attitude motion SISPO-developers/sispo enhancement YgabrielsY
word2vec doc-comment example of KeyedVectors usage broken RaRe-Technologies/gensim data-mining data-science difficulty-easy document-similarity documentation fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec gojomo
solution.Solution -- cannot pass `frame=` as kwarg clawpack/pyclaw Bug finite-volume hyperbolic-equations partial-differential-equations pde pde-solver petsc weno rjleveque
Implement .copy() for DeviceNDArray numba/numba CUDA compiler cuda feature_request llvm numpy parallel python jakirkham
Implement `.ravel()` on non-contiguous data numba/numba CUDA compiler cuda feature_request llvm numpy parallel python jakirkham
Sum and difference bodies glotzerlab/coxeter computational-geometry enhancement geometry physics polygons polyhedra shapes b-butler
Mass conversion (200c vs 200m) syasini/AstroPaint astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit syasini
Add checks whether orekit is running properly SISPO-developers/sispo enhancement YgabrielsY
add test for READ_CSV gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
Clean up warnings in doc build dask/dask dask documentation numpy pandas pydata python scikit-learn scipy TomAugspurger
Add AUX file parsing mzy2240/ESA automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability abirchfield
Implement ColumnDescriptionClass catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial Noxoomo
fix: avoid scrambling of group members opencobra/cobrapy biochemistry bioinformatics cell-design cobra computational-biology flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology BenjaSanchez
reorder prior update and posterior updates for kalman tbrown122387/pf particle-filter statistical-methods statistical-models statistics tbrown122387
Optimize performance of base operations xoopR/set6 enhancement intervals oop r r6 sets RaphaelS1
Revise decorators to allow for docstring rendering scikit-hep/pyhf asymptotic-formulas bug closember cls docs follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
Implement and use type system LiberTEM/LiberTEM GSOC Python-API data-processing design docs electron-microscopy enhancement image-processing python uellue
add call outs to all references in docstrings pvlib/pvlib-python documentation help-wanted photovoltaic python renewable-energy renewables solar-energy wholmgren
xml2json recursively search for the root data file scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Unused parameter in mesh generators / --mesh-only does not cause warning or error idaholab/moose C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation YaqiWang
Suggestion for Catboost Tutorial catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial dennislamcv1
Move fast logger to wc_utils KarrLab/de_sim computational-modelling data-driven-model discrete-event-simulation enhancement object-oriented-programming python simulation artgoldberg
Check the language, clarity and consistency of documentation adbar/htmldate date date-parser datetime entity-extraction html-parsing information-extraction lxml metadata metadata-extraction natural-language-processing nlp parsing time up-for-grabs web-scraping webscraping adbar
Test htmldate on further web pages and report bugs adbar/htmldate date date-parser datetime entity-extraction html-parsing information-extraction lxml metadata metadata-extraction natural-language-processing nlp parsing time up-for-grabs web-scraping webscraping adbar
Support erfcx google/jax enhancement jax cossio
Document attribute pipeline in recipe JuliaPlots/Makie.jl Makie documentation gpu graphics julia julia-language plotting visualization asinghvi17
TestHarness should be able to start directory walking in another directory idaholab/moose C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
refactor lumen.js lumen-org/lumen web-application nandaloo
Provide a method to set attributes JuliaPlots/Makie.jl Makie enhancement gpu graphics julia julia-language plotting visualization asinghvi17
collect_results! : path JuliaDynamics/DrWatson.jl hacktoberfest improvement project-assistant project-management science science-research setup-tool simulations JonasIsensee
allow for `x` axis in series. JuliaPlots/Makie.jl Makie gpu graphics help-wanted julia julia-language plotting visualization vizcon mschauer
Inconsistent documentation of boxes glotzerlab/freud analysis computational-chemistry computational-physics data-analysis documentation hacktoberfest molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis vyasr
CUDA: pinned_array_like, pinned_zeroes, pinned_ones, etc. would be handy numba/numba CUDA compiler cuda feature_request llvm numpy parallel python gmarkall
Add more extract providers ropensci/osmextract geo geofabrik-zone help-wanted open-data osm osm-pbf r rstats Robinlovelace
in systemParameters merge outcome columns (e.g. "merger") into one OUTCOME column TeamCOMPAS/COMPAS enhancement wontfix FloorBroekgaarden
How can I disable filename abbreviations in the results of tab-autocompletion? ipython/ipython closember data-science hacktoberfest help-wanted ipython jupyter notebook python repl cxrodgers
Unify files used in force field validation mosdef-hub/foyer atom-typing disseminating-forcefields force-field foyer molecular-dynamics molecular-simulation python testing mattwthompson
Assigning to DeviceNDArray with Ellipsis fails numba/numba CUDA bug compiler cuda llvm numpy parallel python jakirkham
Add more explicit warning when input file is a csv file without `sep = ","` ropensci/lightr Scope-UX/docs file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy Bisaloo
Potential lingering issues with XYZ files mosdef-hub/mbuild low-priority mbuild molecular-dynamics molecular-simulation molecule-builder python mattwthompson
Suggestion : Run checkm on more than 1 MAG at a time CAMI-challenge/CAMITAX enhancement michoug
Function of len() is invalid to dynamic share array numba/numba CUDA Task compiler cuda llvm numpy parallel python mantouRobot
execute doctests in our continuous integration setup sourmash-bio/sourmash bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling ctb
hdf_open - error reporting gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf4 hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization slayoo
interacting with the file system icesat2py/icepyx closember community-driven enhancement hacktoberfest icesat-2 python3 JessicaS11
Add second order element capability to MeshGenerators idaholab/moose C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation dschwen
update and expand our automated testing functions icesat2py/icepyx closember community-driven hacktoberfest help-wanted icesat-2 python3 JessicaS11
Upstream longitude equality helper to astropy sunpy/sunpy Effort-Low Good-First-Issue Package-Novice Priority-Low Refactoring Upstream-Fix-Required astronomy astropy hacktoberfest python solar solar-physics sun sunpy dstansby
Improve interface for AUX data LiberTEM/LiberTEM UX/DX data-processing design docs electron-microscopy image-processing python uellue
Add documentation for get_diagnostics() LiberTEM/LiberTEM UX/DX data-processing electron-microscopy image-processing python uellue
WASM SIMD implementations of SSE simd-everywhere/simde GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
Not working on Lineage OS 15.1 / 16 TrackerControl/tracker-control-android android privacy tracking-protection kasnder
Accession range support? kblin/ncbi-acc-download enhancement help-wanted peterjc
Better empty state experience LiberTEM/LiberTEM GUI data-processing electron-microscopy image-processing python sk1p
Instrument should be selectable rgb/monochrome SISPO-developers/sispo YgabrielsY
Should mention callback_context in the error message about combining multiple outputs into a single callback plotly/dash bioinformatics charting dash data-science data-visualization error-messages finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app chriddyp
show total number of parameters (not only parsets) in pyhf inspect scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow lukasheinrich
Improve `dfply` test suite zdelrosario/py_grama enhancement uq zdelrosario
Read configuration from log files SISPO-developers/sispo YgabrielsY
Find intermediate results SISPO-developers/sispo YgabrielsY
Tutorials/examples/documentation mosdef-hub/mbuild discussion documentation enhancement formatting mbuild molecular-dynamics molecular-simulation molecule-builder python chrisiacovella
Sidebar toggle to show labels for all tips in tree nextstrain/auspice office-hours please-take-this-issue jameshadfield
Update Level Set module to use vector variables idaholab/moose C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
AVX-512BW functions simd-everywhere/simde GSoC/Outreachy-ideas altivec arm arm64 avx avx2 avx512 fma gfni help-wanted instruction-set-support mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
downloaded file unzipping and sorting icesat2py/icepyx closember community-driven enhancement hacktoberfest icesat-2 python3 JessicaS11
Improve autolink to files in MooseDocs idaholab/moose C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Support for Taqman / hydrolysis / multi-colour probes ropensci/tidyqpcr enhancement help-wanted miqe qpcr qpcr-analysis r r-package rstats tidyverse ewallace
Improve name of InputParameters::registerBase idaholab/moose C-Framework Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Create reduction mode straight from files instead of requiring user config sheet arjunsavel/SImMER astronomical-images astronomy astrophysics enhancement python stars arjunsavel
"Remembering" the previous selection of a wide binary arjunsavel/SImMER astronomical-images astronomy astrophysics enhancement python stars arjunsavel
Periodic wavelet collocation operators ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Improved Export/Download support LiberTEM/LiberTEM GUI data-processing electron-microscopy enhancement image-processing python sk1p
Parallelism of calculations in pyhf ala joblib (or similar) scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch question research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Support running of unit tests from main run_tests idaholab/moose C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Centralize all MooseDocs media into large_media idaholab/moose C-Documentation Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation aeslaughter
Upwind SBP operators of Mattsson (2017) ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Change logo :) MolMeDB/MolMeDB cheminformatics chemistry database lipids membranes permeability small-molecule KarelBerka
Issues with ingest scverse/scanpy anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data andrea-tango
PAGA connectivity score scverse/scanpy Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data rsggsr
Add Werror flag to Setup cython/cython Testing big-data c cpp cpython cpython-extensions cython help-wanted performance python WillAyd
[Feature Req.] power spectrum function in py21cmfast 21cmfast/21cmFAST context-python-wrapper type-feature-code NGillet
Trimming links with length less than scene pixel resolution jonschwenk/RivGraph enhancement manuscript python Lvulis
Document how to embed Cython modules in C/C++ applications cython/cython Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python scoder
Automatic island filtering by island vs channel size. jonschwenk/RivGraph documentation enhancement manuscript python Lvulis
Christoffel Symbols are no tensor! einsteinpy/einsteinpy general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic andi8086
pl.violin will not take "hue" kwarg for seaborn? scverse/scanpy Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data auesro
GUI: Selector handle behavior LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy image-processing python uellue
Better warnings for command line arguments that exist for compatibility smithlabcode/falco moldach
NaN returned during exchange maintenance freqtrade/freqtrade Enhancement Good-first-issue RPC algorithmic-trading bitcoin cryptocurrencies cryptocurrency freqtrade python telegram-bot trade trading-bot sanket-k
Split filter() into two functions tbrown122387/pf enhancement particle-filter statistical-methods statistical-models statistics tbrown122387
Add more compile time checks tbrown122387/pf enhancement help-wanted particle-filter statistical-methods statistical-models statistics tbrown122387
Implement support for various photoreceptor models. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
Warn about unraisable exceptions where they occur cython/cython Error-Reporting big-data c cpp cpython cpython-extensions cython enhancement performance python scoder
sc.pl.paga: TypeError: paga() got an unexpected keyword argument 'ncols' scverse/scanpy Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data YubinXie
Implement support for "oRGB: A Practical Opponent Color Space for Computer Graphics". colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
Support target tags panoptes/POCS Enhancement Help-Wanted astronomy citizen-science config exoplantes panoptes python scheduler telescopes wtgee
Need test coverage of all functions lcpp-org/RustBCA bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura drobnyjt
deprecated parameter in tests file appears to be ignored idaholab/moose C-TestHarness Good-first-issue P-normal T-defect T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation bwspenc
Make testing more robust especially for random objects qutip/qutip ENH Q&A help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack nathanshammah
PDD solver: error in the documentation on how to access the output qpv-research-group/solcore5 Documentation hacktoberfest photovoltaic python semiconductor solar-cells dalonsoa
Check "truth" of CIF exporter Materials-Consortia/optimade-python-tools adapters openapi optimade optimade-api optimade-python optimade-specification priority/medium python tests CasperWA
Usage with Shelter Sandbox TrackerControl/tracker-control-android android privacy tracking-protection m37r
Wrong documentation for Jaccard scipy/scipy Documentation algorithms closember defect python scientific-computing scipy scipy.spatial sprint HKH515
If you get "Segmentation fault", please read! 3fon3fonov/exostriker bug enhancement exoplanet exoplanets help-wanted multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling 3fon3fonov
QUfitting outputs CIRADA-Tools/RM-Tools enhancement Cameron-Van-Eck
Plotting for QUfitting and RMclean1d CIRADA-Tools/RM-Tools enhancement Cameron-Van-Eck
Complete Implementation IfcFacetedBrep converter tumcms/Open-Infra-Platform IFC boost building-information-modelling ifc infrastructure okstra point-cloud refactoring hechth
Chain TrackerControl with other VPN services, such as ProtonVPN TrackerControl/tracker-control-android android privacy tracking-protection famewolf
Calling host functions/operators from function with device annotation parthenon-hpc-lab/parthenon Kokkos bug help-wanted pgrete
var_context builder stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics feature stan bob-carpenter
Tackle some low-hanging fruit in "test_grammar.py" cython/cython Parsing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python scoder
Zooming out from a labelled subtree does not correctly update the URL query nextstrain/auspice bug jameshadfield
Consider adding plotly functionalities qutip/qutip ENH Q&A code help-wanted python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack nathanshammah
Adding get_memory_manager numba/numba CUDA compiler cuda feature_request llvm numpy parallel python jakirkham
lammpsdata box parameters mosdef-hub/mbuild bug mbuild molecular-dynamics molecular-simulation molecule-builder python amorshedi
Implement "rich" output in console and logging DeltaRCM/pyDeltaRCM enhancement amoodie
ValueError: cannot convert float NaN to integer scverse/scanpy anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data sygongcode
Delete or optimize reconstruction? parthenon-hpc-lab/parthenon discussion enhancement help-wanted question pgrete
Use of `IndexRange`s in `par_for` wrappers parthenon-hpc-lab/parthenon enhancement pgrete
automate PyPI/conda release using GitHub Actions. econ-ark/HARK Expertise-CI Expertise-Open-Source Priority-Low Tag-Installation help-wanted MridulS
Dangerous default arguments in numba numba/numba bug compiler cuda llvm numpy parallel python HPLegion
Refactor test suite arjunsavel/SImMER astronomical-images astronomy astrophysics python stars testing arjunsavel
Save for review issues Yes/No answers and slider pmkruyen/dearscholar enhancement Glenn437
BUG: groupby.sum() is inconsistent with df.sum() for large integers pandas-dev/pandas Bug Dtype-Conversions Groupby Needs-Tests Reduction-Operations alignment data-analysis data-science flexible pandas python tom-weiss
Examples for CuPy and Numba.cuda LiberTEM/LiberTEM data-processing docs electron-microscopy image-processing python uellue
Bug on pyapi.call when args is None numba/numba bug compiler cuda easy llvm numpy parallel python guilhermeleobas
readthedocs: "Tutorials" NathanSandford/Chem-I-Calc documentation help-wanted NathanSandford
Custom c++ metric Run Problem catboost/catboost big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning objectives-and-metrics python r tutorial gavrenkov
simplify and document code --- code review gnudatalanguage/gdl antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
Warnings snowformatics/macrobot computer-vision enhancement image-analysis plant-pathogen-interactions python snowformatics
NERSC Software Package spack/spack build-tools ecp feature help-wanted hpc linux macos nersc package-manager python radiuss scientific-computing spack shahzebsiddiqui
Adding markdown links to OpenAPI schema Materials-Consortia/optimade-python-tools OpenAPI docs openapi optimade optimade-api optimade-python optimade-specification priority/low python schema CasperWA
Eliminate `get_providers` and put similar functions into `optimade.server.data` Materials-Consortia/optimade-python-tools enhancement openapi optimade optimade-api optimade-python optimade-specification priority/low python suggestions CasperWA
Launch Binder button does not work. vaexio/vaex bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization adrienpacifico
Better input TSV validation open2c/cooler bioinformatics contact-matrix cooler enhancement file-format genomics hdf5 hi-c python sparse nvictus
Include csv result table in report snowformatics/macrobot computer-vision enhancement image-analysis plant-pathogen-interactions python snowformatics
Possibility of having different number of units in the hidden layers scverse/scvi-tools cite-seq deep-generative-model deep-learning enhancement human-cell-atlas scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes gprashant17
Using Python type hints pyro-ppl/pyro bayesian bayesian-inference deep-learning enhancement machine-learning probabilistic-modeling probabilistic-programming python pytorch testing usability variational-inference warnings-&-errors jpchen
custom logging level for numba internals. numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
Investigate use of testbook for testing Jupyter notebooks scikit-hep/pyhf SciPy-Conference asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch research scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests matthewfeickert
Utility request: preprocessing step of Lancaster et al. JuliaDynamics/TimeseriesSurrogates.jl enhancement hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries Datseris
Add marker showing current mouse position in sequences and gene map nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Attach gene map to the bottom-most sequence nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priomedium research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
[DOC] Add docstring for split_out and split_every in dask groupby-aggregate API dask/dask dask dataframe documentation numpy pandas pydata python scikit-learn scipy VibhuJawa
Equality tests on floats: add support for math.isclose() and numpy.isclose() numba/numba compiler cuda feature_request llvm numpy parallel python alexandrehuat
Add support for extra NOAA JSON timeseries sunpy/sunpy Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy timeseries nabobalis
Add status panel showing current filtering and sorting criteria and number of sequences displayed out of total nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Add filtering and sorting reset button(s) nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Einasto Profile syasini/AstroPaint astrophysical-signals cosmology halo-catalog python simulation-toolkit syasini
Factorize NFW profiles syasini/AstroPaint astrophysical-signals cosmology halo-catalog python simulation-toolkit syasini
Add tSZ to Battaglia16 syasini/AstroPaint astrophysical-signals cosmology enhancement halo-catalog python simulation-toolkit syasini
Add more tests syasini/AstroPaint astrophysical-signals cosmology halo-catalog python simulation-toolkit test syasini
Variable column width nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Strip common prefixes in sequence names nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Support MiniZinc output chocoteam/choco-solver constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp feature java solver cprudhom
DOC: Reccomended use of read_csv's date_parser parameter is very slow pandas-dev/pandas Docs IO-CSV Performance Timeseries alignment data-analysis data-science flexible pandas python sm-Fifteen
Add new coordinate and metric classes einsteinpy/einsteinpy coordinates enhancement general-relativity geodesics gravitational-physics hacktoberfest metric new-feature orbital-simulation perihelion research space-physics JeS24
GUI: ROI selector bug LiberTEM/LiberTEM GUI bug data-processing electron-microscopy image-processing python anandbaburajan
Implement support for "HyAB" large colour difference metric. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
[FEATURE-REQUEST] Support netCDF-4 files vaexio/vaex bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization snitramodranoel
Check for extraneous tensor casts with "data" handling scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement follow-up frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Paint qSZ using Line Integral Convolution syasini/AstroPaint astrophysical-signals cosmology halo-catalog python simulation-toolkit syasini
Adjoints of FEOperators gridap/Gridap.jl enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes santiagobadia
Loading json schema via pkgutil scikit-hep/pyhf asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow alexander-held
Support zero-length arrays in numba.cuda numba/numba CUDA compiler cuda feature_request llvm numpy parallel python eric-wieser
change to standard NLL fit objective scikit-hep/pyhf asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow lukasheinrich
Passing hyperparameters as kwargs mackelab/sbi API-changes bayesian-inference less-urgent likelihood-free-inference machine-learning parameter-estimation pytorch question simulation-based-inference michaeldeistler
BUG: read_sql no longer works simply with SqlAlchemy selectables and a quick fix pandas-dev/pandas IO-SQL Needs-Tests alignment data-analysis data-science flexible pandas python machow
DOC: `.str.cat` output in case of `Index` object pandas-dev/pandas Docs alignment data-analysis data-science flexible pandas python galipremsagar
Evaluate PDE solution gridap/Gridap.jl enhancement finite-elements gridap help-wanted julia new-functionality numerical-methods partial-differential-equations pdes jw3126
Audio Data Loading [FEATURE-REQUEST] vaexio/vaex bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization eladmw
Benchmark the batched tridiagonal solver joglekara/VlaPy documentation numerical-methods plasma-physics python tests vlasov joglekara
Case sensitive input parsing parthenon-hpc-lab/parthenon documentation help-wanted invalid question refactor jdolence
Implement higher order finite-differenced implementations of edfdv joglekara/VlaPy enhancement numerical-methods plasma-physics python tests vlasov joglekara
Implement centered-difference vdfdx components joglekara/VlaPy enhancement numerical-methods plasma-physics python tests vlasov joglekara
cut mask (experiment footprint) based on input keyword syasini/AstroPaint astrophysical-signals cosmology halo-catalog help-wanted python simulation-toolkit syasini
Benchmark the edfdv solvers joglekara/VlaPy documentation numerical-methods plasma-physics python tests vlasov joglekara
Benchmarking the vdfdx solvers joglekara/VlaPy documentation numerical-methods plasma-physics python tests vlasov joglekara
column types not consistent in etox_targets() ropensci/webchem bug cas-number chemical-information chemspider consistent-api identifier r r-package ropensci rstats webscraping Aariq
Catboost R package does not support calc_feature_statistics catboost/catboost R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial benshahararnon
Backend option in Compound.save() mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python rsdefever
Improve error message for NumPy alias type used as dtype in ArrayNdCtors numba/numba compiler cuda feature_request llvm numpy parallel python stuartarchibald
Check for L2 overflow TeamCOMPAS/COMPAS enhancement severity_minor urgency_low ilyamandel
[REQUEST] Zoom to model tumcms/Open-Infra-Platform boost building-information-modelling enhancement ifc infrastructure okstra point-cloud pjanck
fix LCA_Database __repr__ so that `None` is not displayed sourmash-bio/sourmash bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling ctb
An 'x' button to close the error messages popup plotly/dash bioinformatics charting dash data-science data-visualization finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app chriddyp
Interval component doesn't work when Dash app is an iframe of a Flask app plotly/dash bioinformatics charting dash data-science data-visualization finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app louis-red
Off-by-one error max_date_allowed in dcc.DatePickerRange plotly/dash bioinformatics charting dash data-science data-visualization finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app MattiasOlla
cmfgen2tardis not working tardis-sn/tardis astrophysics bug-lady_beetle priority---medium python radiative-transfer science supernova Knights-Templars
[Feature Req.] Ability to access all perturbed velocity components (also alternate line-of-sight direction) 21cmfast/21cmFAST context-python-wrapper type-feature-code BradGreig
`cmake` linting is not the same as the linting in the CI parthenon-hpc-lab/parthenon Yurlungur
Merge returns duplicate indices dask/dask dask dataframe documentation numpy pandas pydata python scikit-learn scipy tadej-redstone
Move BrownCorpus from word2vec to gensim.corpora RaRe-Technologies/gensim data-mining data-science document-similarity fasttext gensim housekeeping information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec piskvorky
Expose weights as parameter wherever relevant in the various Delta E computation definitions. colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
The X11 connection broke (error 1). Did the X11 server die? 3fon3fonov/exostriker bug exoplanet exoplanets external-package-problem help-wanted multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling 3fon3fonov
Enhancement: Parallelize classical value of nonlocal game vprusso/toqito enhancement matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Expand Generators Module Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
Support superquadrics in sdf actor fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Latex support fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Render video frames on a cube fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
GIF support fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Check how shaders affect antialiasing fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Add glow effects fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Add support for fast rotations fury-gl/fury 3d-graphics beer-Hacktoberfest-beer game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeNew-Feature Garyfallidis
Suggestions for documentation improvements jump-dev/JuMP.jl Status-Help-Wanted Type-Documentation conic-programs julia linear-programming mathematical-modelling mathematical-programming mixed-integer-programming modeling-language nonlinear-programming optimization semidefinite-programming odow
Bash's B is misaligned with the other symbols in he launcher pad (and consider switching to the official Bash icon) jupyterlab/jupyterlab Design-System-CSS jupyter jupyterlab joelostblom
sc.tl.filter_rank_genes_groups gene name with NA scverse/scanpy Bug-🐛 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data jphe
COLORMAP_APPLICABLE gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization PaddyLeahy
Use `PetscRealPart` and `PetscImaginaryPart` in supermeshing.py firedrakeproject/firedrake complex ReubenHill
Render code examples automatically with sphinx_gallery pyro-ppl/pyro Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference website eb8680
RF AnnexRepo: extend/unify init_remote and enable_remote datalad/datalad RIA/ORA closember data-storage dataset enhancement git-annex python usable yarikoptic
Performance of _get_relevance() DeepRank/deeprank 3d-cnn docking enhancement protein-protein-interaction pytorch NicoRenaud
Cannot use automate_training on Compute Canada cluster ivadomed/ivadomed jcohenadad
Alternate "port_handler=slirp4netns" not implemented for user-defined rootless cni networks containers/podman Good-First-Issue containers docker kind/feature kubernetes linux network oci pasta rootless slirp4netns usury
Check how order parameters treat particles with zero neighbors glotzerlab/freud analysis computational-chemistry computational-physics data-analysis environment hacktoberfest molecular-dynamics monte-carlo-simulation order particle-system python science scientific-computing spatial-analysis bdice
JSOCClient docs are out of date/innacurate sunpy/sunpy Documentation Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest net python solar solar-physics sun sunpy wtbarnes
CUDA: Add accessors for function attributes beyond just register use per thread numba/numba CUDA compiler cuda llvm numpy parallel python gmarkall
Nuclear timescale calculation makes assumptions about core mass TeamCOMPAS/COMPAS severity_minor urgency_low TomWagg
Better error message for `to_csv` with distributed worker and non-local filesystem dask/dask dask documentation numpy pandas pydata python scikit-learn scipy jsignell
XYZ writer improvements mosdef-hub/mbuild enhancement mbuild molecular-dynamics molecular-simulation molecule-builder python rsdefever
f"Values {list(not_found)}, from {list(indexer)}, " "are not valid obs/ var names or indices." scverse/scanpy Bug-🐛 anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data brianpenghe
TYP: investigate/fix ignored mypy errors pandas-dev/pandas Closing-Candidate Typing alignment data-analysis data-science flexible pandas python simonjayhawkins
Add progress indicators for URL-based fetching nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
App internet is disabled when monitoring is disabled and always-on is enabled TrackerControl/tracker-control-android android privacy tracking-protection wontfix p2635
Note --max-ppsize for large datasets in preprocess vignette SchlossLab/mikropml documentation machine-learning r-package rstats kelly-sovacool
chopping chains in results class sblunt/orbitize enhancement semaphoreP
Savename expand for nested structs is not working JuliaDynamics/DrWatson.jl bug hacktoberfest project-assistant project-management savename science science-research setup-tool simulations sebastianpech
Better explain the groups param & batch effects in the intro vignette SchlossLab/mikropml documentation machine-learning r-package rstats kelly-sovacool
TEOS-10 Accessor Improvement Suggestions euroargodev/argopy argo argo-core argo-data argo-floats enhancement invalid oceanography python stale DocOtak
clust_wts does not exist in GDL gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization brandy125
Explore Alaska census data ElectionDataAnalysis/electiondata common-data-format election election-data ericmtsai
make model runs end at the time specified. DeltaRCM/pyDeltaRCM enhancement amoodie
Validate extents when creating a Mesh sxs-collaboration/spectre enhancement nilsvu
Refactor SVI tutorial code from MD code blocks into code cells pyro-ppl/pyro Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference ab-10
requesting ncols parameter in sc.pl.violin() scverse/scanpy Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data rpeys
Add an explicit Runge-Kutta method to applications stillwater-sc/universal arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic Ravenwater
Fix documentation of abort sxs-collaboration/spectre documentation wthrowe
rendering a single/monolithic offlineable html file nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus dpark01
Visualization of closure plots stillwater-sc/universal arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic Ravenwater
Visualization of the ubox of unum Type I stillwater-sc/universal arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems enhancement fixed-point-arithmetic floating-point-arithmetic half-precision help-wanted integer-arithmetic interval-arithmetic octa-precision posit-arithmetic quad-precision quarter-precision rational-arithmetic Ravenwater
Test US Senate contest totals wherever they exist ElectionDataAnalysis/electiondata common-data-format election election-data enhancement sfsinger19103
Prevent tooltip content from going outside the screen nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain priohigh research rna sars-cov-2 science sequences sequencing strain tbug tfeat virus ivan-aksamentov
Add overflow values to the tests simd-everywhere/simde altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization mr-c
Warn when no observables are present lanl/PyBNF enhancement emitra17
add more hash manipulation utilities to sourmash CLI sourmash-bio/sourmash bioinformatics fracminhash good-next-issue hacktoberfest kmer minhash plugin_todo python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling ctb
Why do factorial approximations generate different values stillwater-sc/universal arbitrary-precision arbitrary-precision-arithmetic arbitrary-precision-floats arbitrary-precision-integers arithmetic artificial-intelligence c-plus-plus digital-signal-processing embedded-systems fixed-point-arithmetic floating-point-arithmetic half-precision integer-arithmetic interval-arithmetic numerical-investigation octa-precision posit-arithmetic quad-precision quarter-precision question rational-arithmetic Ravenwater
Feature Request: Support ddof argument in np.nan[std | var] numba/numba compiler cuda feature_request llvm numpy parallel python mroeschke
DOC: add comparison to spreadsheets pandas-dev/pandas Docs IO-Excel alignment data-analysis data-science flexible pandas python afeld
[FEATURE] specify number of trees for shap catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial pseudotensor
Stork In Git Repo idaholab/moose C-MOOSE-Scripts Good-first-issue P-minor T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation friedmud
Offset support in Wigner and other visualizations qutip/qutip ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack Krastanov
Dashline / dotted line actor fury-gl/fury 3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation state-needs-PR typeNew-Feature skoudoro
Residuals to orbit plot sblunt/orbitize enhancement help-wanted sblunt
Developer documentation lacks complete installation instructions nextstrain/augur bug documentation please-take-this-issue huddlej
Clean up custom abundance input and documentation tardis-sn/tardis astrophysics documentation io model priority---medium python radiative-transfer science supernova andrewfullard
Re-implement `%preview -r` with the new `sos server` mechanism. vatlab/sos-notebook enhancement jupyter-kernels BoPeng
save chi2 values to results sblunt/orbitize enhancement long-term semaphoreP
Automatically run tests from submodules idaholab/moose C-TestHarness Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation tophmatthews
allow multi coefficient polynomials MrMinimal64/multivar_horner enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3 jannikmi
`verdi calcjob cleanworkdir`: Add option for work chain aiidateam/aiida-core aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/verdi type/feature-request workflow workflow-engine workflows mbercx
Feature: Complementary channel vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Enhancement: Maximum confidence state distinguishability vprusso/toqito enhancement matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Add checks for relative input shapes inside bindings. mlpack/mlpack c-automatic-bindings c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing NippunSharma
Get all modules to pass parallel/distributed/threaded/recover tests idaholab/moose C-Modules Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation loganharbour
Write an example/recipe for going from structure to chemiscope input cosmo-epfl/chemiscope documentation hacktoberfest materials-science molecule visualization web Luthaf
Update release-checklist and move into docs gvilitechltd/LibSWIFFT c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft gvilitech
Migrate from markdown files to docs gvilitechltd/LibSWIFFT c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography documentation hash-functions homomorphic lattice-based-crypto secure-hashing swifft gvilitech
[nextalign] Run clang-analyzer as a part of the dev script and in CI nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextalign package-nextalign_cli research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Check file changes based on content instead of the last_modified metadata jupyterlab/jupyterlab enhancement help-wanted jupyter jupyterlab pkgdocregistry skukhtichev
Add boundary conditions for different sides in Brick and Rectangle sxs-collaboration/spectre enhancement nilsdeppe
Handle missing prefixes more elegantly CLARIAH/grlc api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui albertmeronyo
Handle metadata more elegantly CLARIAH/grlc api enhancement linked-data linked-data-api open-api semantic-web sparql swagger-ui albertmeronyo
STELLAR module: issues with output density VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars bug climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides jbirky
[REF] All graphical unit tests needs updating tumcms/Open-Infra-Platform boost building-information-modelling example-files ifc infrastructure okstra point-cloud refactoring pjanck
Bounds check for rectangular ROI LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy image-processing python uellue
Path input for file browser should be able to open a file directly LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy enhancement image-processing python uellue
DOC: Reindexing behaviour of dataframe column-assignment missing pandas-dev/pandas Docs Indexing alignment data-analysis data-science flexible pandas python fish-face
allow different polygons in `sc.pl.spatial` scverse/scanpy Area---Plotting-🌺 Area-–-Spatial-🗺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data giovp
DOC: add button to edit on GitHub pandas-dev/pandas Docs Needs-Discussion alignment data-analysis data-science flexible pandas python afeld
allow sampling of posterior outside of prior bounds mackelab/sbi bayesian-inference enhancement likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference rdgao
Inline example plots in docs scverse/scanpy Area---Documentation-📒 Area---Plotting-🌺 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data ivirshup
JupyterLab drag-and-drop copy doesn't work for folders jupyterlab/jupyterlab jupyter jupyterlab adammclaurin
Add Windows filesystem support ml-evs/matador bug computational-chemistry materials-science python ml-evs
Rectangle domain creator / Affine coordinate map should output error instead of FPE for invalid input sxs-collaboration/spectre bug nilsvu
Feature: Min-relative entropy for quantum states vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Feature: Max-relative entropy for quantum states vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Feature: Min-relative entropy for quantum channels vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Feature: Max-relative entropy for quantum channels vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
[feature] implement locally spheroidal surface binding potential lcpp-org/RustBCA bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura drobnyjt
reizql: META(filename=...) matcher reizio/reiz.io ast-matcher python-ast search-engine source source-code isidentical
Make image licensing requirements clear nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus emmahodcroft
Add type hints (PEP-484) SISPO-developers/sispo YgabrielsY
Add bibtex style citation into readme SISPO-developers/sispo YgabrielsY
Add simplified install instructions to readme SISPO-developers/sispo YgabrielsY
Keep only typical config files + Standardise them ivadomed/ivadomed cardDESIGN_DISCUSSION documentation help-wanted charleygros
[BUG] Spaces get removed from literal text when reading IFC tumcms/Open-Infra-Platform IFC boost bug building-information-modelling early-binding-generator ifc infrastructure okstra point-cloud pjanck
Improving tutorials pysal/spaghetti enhancement gis graph-theory network-analysis notebooks pysal python spatial-network topology wishlist jGaboardi
have code error out if metallicities exceed tabulated fsps metallcities dnarayanan/powderday enhancement dnarayanan
dust masses for gizmo with OTF dust dnarayanan/powderday bug variable-extinction dnarayanan
Linear Scheduler Coefficients should be Named quantities in the JSON input dsavransky/EXOSIMS enhancement dsavransky
Audit selectKernel dialog to make sure it always has translator jupyterlab/jupyterlab jupyter jupyterlab JessicaBarh
DOC: Additional items for the cheat sheet pandas-dev/pandas Docs alignment data-analysis data-science flexible pandas python Dr-Irv
get rid of unused argument warning tbrown122387/pf enhancement help-wanted particle-filter statistical-methods statistical-models statistics tbrown122387
Possible conversion issues with large unit cells Materials-Consortia/optimade-python-tools adapters bug help-wanted openapi optimade optimade-api optimade-python optimade-specification priority/medium python CasperWA
Apply Nextstrain's Auspice customizations to the tree page nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextclade_web research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
BUG (?): dtype.value_counts() shows categorical multiple times pandas-dev/pandas Algos Categorical Docs alignment data-analysis data-science flexible pandas python MarcoGorelli
Stock price forecasting demo traja-team/traja animal-behavior enhancement python spatial-data-analysis time-series-analysis trajectory-analysis JustinShenk
DOC: follow Google's developer documentation style guide geopandas/geopandas documentation martinfleis
Add type hints to entity grid dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Detect when trying to load an IDL sav file in the genx reader and redirect users to scipy.io.readsav sunpy/sunpy Documentation Effort-Low Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest io python solar solar-physics sun sunpy namurphy
Streamlit protobuf names may collide with those of other packages streamlit/streamlit data-analysis data-science data-visualization deep-learning developer-tools machine-learning priorityP3 python statusconfirmed streamlit typebug thiemoToadi
Implement `_repr_html_` on relevant classes LiberTEM/LiberTEM UX/DX data-processing electron-microscopy image-processing python sk1p
Stencil neighborhood option doesn't support numpy.int64. numba/numba ParallelAccelerator compiler cuda llvm lowpriority numpy parallel python DrTodd13
Advertisting: answer to open question about opening binary files ropensci/lightr file-import help-wanted r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy Bisaloo
Implement Guiraud’s Index dpalmasan/TRUNAJOD2.0 coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Implement a Hapax Legomena Index dpalmasan/TRUNAJOD2.0 coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
write command-line test for `lca summarize --query-from-file` sourmash-bio/sourmash bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling testing ctb
Document units in writer/reader functions mosdef-hub/mbuild documentation mbuild molecular-dynamics molecular-simulation molecule-builder python jennyfothergill
Polarization angles use wrong convention CIRADA-Tools/RM-Tools enhancement Cameron-Van-Eck
Add type hints to givenness dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Add type hints to lexico semantic norms dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Add type hints to semantic_measures.py dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Add type hints to surface_proxies dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Add type hints to utils dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
NeighborList should be constructible from system-like object and 2D array of bond indices glotzerlab/freud analysis computational-chemistry computational-physics data-analysis hacktoberfest locality molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis bdice
missing function comfit gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping mpfit netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization brandy125
Improve description of modifier inputs in docs scikit-hep/pyhf asymptotic-formulas closember cls docs frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
Update all examples with new plotting methods from #1011 LiberTEM/LiberTEM UX/DX data-processing docs electron-microscopy enhancement image-processing python uellue
use Kubota & done as an option for AGN spectra dnarayanan/powderday enhancement dnarayanan
Function documentation ropenscilabs/qcoder help-wanted r r-package rstats unconf unconf18 elinw
POISE should halt if rotational frequency is close to pericenter angular frequency VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides RoryBarnes
Add output column headers to .forward files VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides RoryBarnes
Read in input files only once VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides RoryBarnes
Printing of output parameters should be limited to those that are requested VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars climate enhancement exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides RoryBarnes
Implement universal POS tags ratio dpalmasan/TRUNAJOD2.0 coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio usability dpalmasan
Allow user to supress reports of missing CandidateContests ElectionDataAnalysis/electiondata common-data-format election election-data enhancement user-convenience sfsinger19103
Allow users to access the PNGs from the web GUI LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy enhancement image-processing python uellue
`tag!()` always includes name of the last git tag with a message JuliaDynamics/DrWatson.jl hacktoberfest low-priority project-assistant project-management saving-files science science-research setup-tool simulations imLew
Improve handling of PBC info from openbabel mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python jennyfothergill
Improve box handling in pybel tests mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python jennyfothergill
Fix boundingbox check for non-orthogonal boxes mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python jennyfothergill
Improvements to coordinate_transform.py mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python jennyfothergill
Pkg.activate is not enough for forcing correct environment JuliaDynamics/DrWatson.jl hacktoberfest project-assistant project-management science science-research setup-tool simulations fredrikekre
BUG: Spinner updates every 2 steps but advertises as 1 step astropy/astropy Bug Effort-low Package-novice astronomy astrophysics astropy python science utils pllim
Create a way to read project data from a spread sheet ropenscilabs/qcoder r r-package rstats unconf unconf18 elinw
Interesting package: scclust llrs/experDesign batch cran experiment-design r r-package rstats llrs
Minimum cell cutoff in sc.pl.dotplot scverse/scanpy Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data gokceneraslan
Eliminate use of Astropy logging StingraySoftware/stingray astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest help-wanted neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries matteobachetti
Remove the restriction that metric tensor can only be 'uu' or 'll' einsteinpy/einsteinpy enhancement general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics symbolic tensor WenyinWei
Smarter error messages from the filtertransformer Materials-Consortia/optimade-python-tools enhancement ergonomics openapi optimade optimade-api optimade-python optimade-specification priority/low python server transformers ml-evs
Missing tests for some validation paths aiidateam/aiida-core aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/query-builder topic/testing workflow workflow-engine workflows ramirezfranciscof
Initial ice sheets heights shouldn't be negative! VirtualPlanetaryLaboratory/vplanet astrobiology atmospheres atmospheric-escape binary-stars bug climate exoplanets galaxies geochemistry geophysics habitability magnetic-fields n-body-simulator orbits planetary-science rotation stellar stellar-astrophysics tides RoryBarnes
Make use of rhandsontable's read only features ropensci/dataspice data dataset enhancement help-wanted metadata r r-package rstats schema-org unconf unconf18 amoeba
use `world` instead of `usa` for default basemap ropensci/rinat inaturalist r r-package rstats spocc stragu
Untested code in Nodes.py cython/cython Testing big-data c cpp cpython cpython-extensions cython defect help-wanted performance python scoder
correlation between celltypes and age scverse/scanpy Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data FADHLyemen
Add optimized implementations to WASM SIMD128 simd-everywhere/simde GSoC/Outreachy-ideas accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
Improve response_fields and sort query parameter regexes Materials-Consortia/optimade-python-tools ergonomics models openapi optimade optimade-api optimade-python optimade-specification priority/low python schema suggestions ml-evs
Add random walks to rustworkx Qiskit/rustworkx dag enhancement graph graph-theory python rust nahumsa
BUG: Automatic data alignment fails in the `transform` method of `GroupBy` objects pandas-dev/pandas Apply Docs Groupby alignment data-analysis data-science flexible pandas python gdudziuk
Pass detrended_flux and detrended_flux_err directly to constructor ekaterinailin/AltaiPony enhancement ekaterinailin
[ENH] Pythonise the documentation! cython/cython Documentation big-data c cpp cpython cpython-extensions cython help-wanted performance python scoder
Support secure DNS TrackerControl/tracker-control-android android help-wanted privacy tracking-protection laurentlbm
Add Colab notebook with examples running on GPU blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo probabilistic-programming sampling-methods rlouf
Huge data use: Traffic wrongly attributed to TC TrackerControl/tracker-control-android android privacy tracking-protection wontfix ThatIsAPseudo
Calculating Time Resolution pysat/pysat cubesat electric-fields enhancement ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science thermosphere rstoneback
Allow data w missing modalities upon request ivadomed/ivadomed feature help-wanted charleygros
When too many tabs are open in a supanel they overflow jupyterlab/jupyterlab jupyter jupyterlab pkgui-components tagDesign-System-CSS krassowski
Improve list of papers using TARDIS tardis-sn/tardis astrophysics documentation python radiative-transfer science supernova smithis7
Implement Salience model for Entity Grid dpalmasan/TRUNAJOD2.0 coherence cohesion enhancement entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio dpalmasan
Document required vs. optional dependencies mosdef-hub/mbuild mbuild molecular-dynamics molecular-simulation molecule-builder python mattwthompson
Dekel-Zhao Profile Jammy2211/PyAutoLens astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python Jammy2211
Self interacting dark matter profile deflections Jammy2211/PyAutoLens astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python Jammy2211
Hernquist Light Profile Jammy2211/PyAutoLens astronomy astrophysics cosmology galaxy gravitational-lenses gravitational-lensing image image-processing lens-modeling physics python Jammy2211
[BUG] 0.29.22: sphinx warnings cython/cython Documentation big-data c cpp cpython cpython-extensions cython performance python kloczek
doc_path must be unique ropenscilabs/qcoder r r-package rstats unconf unconf18 elinw
Warn users about about incompatibility with adblockers and Brave browser nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextclade_web research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Investigate slow navigation of the tree page nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextclade_web research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Open tree in new tab without requiring new analysis nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus corneliusroemer
Warn users about memory consumption when they try to run on huge datasets nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Document DYLD_FALLBACK_LIBRARY_PATH behavior from Big Sur on spack/spack bug build-tools documentation hpc impact-low linux macOS macos modules package-manager python radiuss scientific-computing spack sethrj
Improve IAU/COSMO documentation in enmap.read_map simonsobs/pixell astrophysics cosmology documentation image-processing zatkins2
Add units to BlackBodySimpleSource tardis-sn/tardis astrophysics easy python radiative-transfer science supernova smithis7
Documentation tests LondonBiofoundry/basicsynbio help-wanted hainesm6
Gensim's FastText model reads in unsupported modes from Facebook's FastText RaRe-Technologies/gensim bug data-mining data-science difficulty-easy document-similarity fasttext gensim information-retrieval machine-learning natural-language-processing neural-network nlp python topic-modeling word-embeddings word-similarity word2vec mpenkov
_sparse_nanmean is inefficient scverse/scanpy Area-–-Performance-🐌 Enhancement-✨ anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data ivirshup
[REQUEST] Additional example tumcms/Open-Infra-Platform boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud pjanck
Explain the calculation of coherence limit in RB Qiskit/qiskit-experiments documentation qiskit ShellyGarion
nice plotting functions? jameschapman19/cca_zoo canonical-correlation-analysis cca cca-zoo dcca deep enhancement kernel multiset-cca multiview pls pytorch tensor-cca jameschapman19
FFTW Cleanup ECP-WarpX/WarpX backend-openmp component-spectral gpu laser particle-in-cell physics pic plasma research simulation ax3l
Support jit decorator flags in cc.export (e.g. fastmath) numba/numba AOT compiler cuda feature_request llvm numpy parallel python gmarkall
Default values of Adaboost program are not good mlpack/mlpack c-binding c-methods c-plus-plus deep-learning hacktoberfest help-wanted machine-learning machine-learning-library nearest-neighbor-search regression s-keep-open scientific-computing t-bug-report NippunSharma
Standardize actors colors (follow-up of #430) fury-gl/fury 3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement skoudoro
Merge implementations from "missing SSE implementations" to NEON simd-everywhere/simde accelerated-implementation altivec arm arm64 avx avx2 avx512 fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
Relaxed SIMD support simd-everywhere/simde altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization nemequ
boxplot attributes aren't fully documented JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization SimonDanisch
RMSPE Metric catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial jonimatix
Clean tests fAndreuzzi/BisPy algorithms bisimulation graph-algorithms graph-theory hacktoberfest help-wanted python fandreuz
Optional extra columns for displaying additional info, such as number of parameters and number of data points in result tables fitbenchmarking/fitbenchmarking Enhancement Good-first-issue Anders-Markvardsen
include sample data with the install cogent3/cogent3 bioinformatics biological-sequence-analysis biology biopython data-science enhancement evolution genomics help-wanted markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics GavinHuttley
Implement vectorized adaptive HMC pyro-ppl/pyro bayesian bayesian-inference deep-learning enhancement help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference eb8680
ENH: expose all shapely functions as GeoSeries/GeometryArray methods geopandas/geopandas enhancement martinfleis
Migrate some examples to a public dataset LiberTEM/LiberTEM data-processing docs electron-microscopy image-processing python uellue
Fix deprecation warning jonschwenk/RivGraph manuscript python jonschwenk
BUG: `DataFrame.to_parquet` doesn't round-trip pyarrow StringDtype pandas-dev/pandas Docs IO-Parquet Strings alignment data-analysis data-science flexible pandas python TomAugspurger
Replace os.path imports with custom helper datalad/datalad DX closember data-storage dataset easy git-annex python usable adswa
Simplify the API JuliaSmoothOptimizers/PDENLPModels.jl enhancement tmigot
Convergence plots do not show up tardis-sn/tardis astrophysics documentation python radiative-transfer science supernova visualization atharva-2001
Docs: 404 aiidateam/aiida-core aiida computational-science data-provenance database provenance scheduler ssh topic/documentation workflow workflow-engine workflows m-a-saleh
rewrite git history to remove jupyter notebook outputs undark-lab/swyft enhancement help-wanted likelihood-free-inference machine-learning marginal-neural-ratio-estimation neural-ratio-estimation parameter-estimation python pytorch simulation-based-inference truncated-neural-ratio-estimation bkmi
Implement sorting on the backend Merck/BioPhi antibody enhancement help-wanted humanization humanness oasis sapiens prihoda
Functions in Grama throughout are still missing documentation zdelrosario/py_grama enhancement uq OscarDeGar
Add "thomas_fermi" option for unbound electrons atomec-project/atoMEC atomic-physics density-functional-theory electronic-structure enhancement plasma-physics warm-dense-matter timcallow
[ENH] Help type checkers find Shadow.pyi cython/cython Pure-Python-Mode big-data c cpp cpython cpython-extensions cython defect performance python Bluenix2
User submitted query response on how to start interacting with DHS surveys - A demo ropensci/rdhs dataset dhs dhs-api extract peer-reviewed r r-package rstats survey-data OJWatson
storing dict in .h5ad should raise warning when keys include '/' scverse/anndata Bug-🐛 bioinformatics data-science machine-learning scanpy scverse transcriptomics MxMstrmn
Preprocessing for EZStat format ECSHackWeek/impedance.py battery corrosion electrochemistry enhancement fuel-cell impedance lithium-ion xraymancs
Should sleep/retry a few times upon 'Network is unreachable' datalad/datalad DX closember data-storage dataset git-annex python tests usable yarikoptic
[REQUEST] New example files OFF / XYZ / BIN tumcms/Open-Infra-Platform boost building-information-modelling enhancement example-files ifc infrastructure okstra point-cloud pjanck
Provide instructions on mounting OASis database through Docker Merck/BioPhi antibody documentation help-wanted humanization humanness oasis sapiens prihoda
Add support for uncertainty with microscopy data ivadomed/ivadomed mariehbourget
Fix warnings in docs build nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tbug virus ivan-aksamentov
Add user guide/examples/tutorials Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
Allow indels in primer detection nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus mcroxen
[Docs] Add landscape images for 2d functions in documentation sjvrijn/mf2 benchmark-functions benchmark-suite benchmarking-suite documentation multi-fidelity python sjvrijn
Add CITATION.cff LiberTEM/LiberTEM UX/DX data-processing docs electron-microscopy enhancement image-processing infra python uellue
replace `pytorch_testing_utils` with native PyTorch solution pmeier/pystiche Good-first-issue enhancement framework neural-style-transfer python pytorch pmeier
Possible confusion between current GUI parameters and notebook download LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy image-processing notebooks python uellue
[ENH] download and use horizon data to affect sky diffuse and far shading pvlib/pvlib-python enhancement help-wanted io photovoltaic python renewable-energy renewables solar-energy mikofski
Implement CW_FIELD compound widget procedure gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
Implement CW_FORM compound widget procedure gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
Implement CW_PDMENU compound widget procedure gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
[REQUEST] Add citation feature tumcms/Open-Infra-Platform boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life pjanck
Mark "short" sequences nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ivan-aksamentov
Use point set to shape mapping to improve polygon annotation widget palaimon/ipyannotator annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila ibayer
[REQUEST] Rework Contributors tumcms/Open-Infra-Platform boost building-information-modelling documentation enhancement ifc infrastructure okstra point-cloud quality_of_life refactoring pjanck
add `seed` to param string docs sourmash-bio/sourmash bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling ctb
ENH: Rename noise keyword argument in redshifts_from_comoving_density function skypyproject/skypy astronomy astrophysics cosmology enhancement forward-modeling low-priority module-galaxies skypy rrjbca
Navigation arrows between individual results Merck/BioPhi antibody enhancement humanization humanness oasis sapiens prihoda
Add unit tests to explicitly test different combinations of data types sblunt/orbitize enhancement long-term sblunt
BUG: a duplicated index would cause groupby.fillna(method='ffill') a wrong result pandas-dev/pandas Bug Groupby Needs-Tests alignment data-analysis data-science flexible pandas python mIgLLL
Add new layout methods Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
Expand graph operations Qiskit/rustworkx dag enhancement graph graph-theory python rust georgios-ts
Add more centrality measures Qiskit/rustworkx dag enhancement graph graph-theory python rust georgios-ts
Speed up code ElectionDataAnalysis/electiondata common-data-format election election-data technical-debt sfsinger19103
Add `is_semiconnected` function. Qiskit/rustworkx dag enhancement graph graph-theory python rust georgios-ts
Don't render incorrectly formatted inline math/latex as math text jupyterlab/jupyterlab bug jupyter jupyterlab joelostblom
Spack recipe out there? parthenon-hpc-lab/parthenon enhancement help-wanted kurtsansom
Deactivate filer icon (eye) missing for date range filters nextstrain/auspice enhancement eharkins
Add option to disable GPUDirect RDMA parthenon-hpc-lab/parthenon enhancement help-wanted jlippuner
Add support for class labeling of bbox palaimon/ipyannotator annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila ibayer
Use more helpful package tools Materials-Consortia/optimade-python-tools CI enhancement ergonomics help-wanted needs-discussion openapi optimade optimade-api optimade-python optimade-specification priority/low python question security suggestions CasperWA
Setting adata.filename = None doesn't load .X to memory scverse/anndata Bug-🐛 bioinformatics data-science machine-learning pinned scanpy scverse topic-backed transcriptomics Koncopd
can we add namespace when save_model in format cpp? catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting help-wanted kaggle machine-learning python r tutorial nickhuangxinyu
Triply jagged branches JuliaHEP/UnROOT.jl cern-root future hacktoberfest hep hep-ex high-energy-physics julia particle-physics aminnj
Improve image labeling for large number of classes palaimon/ipyannotator annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila ibayer
%" pipe and "<-" assignment when using IRkernel in JupyterLab" >Add "%>%" pipe and "<-" assignment when using IRkernel in JupyterLab jupyterlab/jupyterlab enhancement jupyter jupyterlab k-motwani
Benchmarking for potential regression JuliaHEP/UnROOT.jl cern-root hacktoberfest hep hep-ex high-energy-physics julia particle-physics performance aminnj
`num` test failures beyond bit-for-bit differences with intrinsic math MESAHub/mesa astronomy astrophysics binary-evolution fortran rainy-day stellar-astrophysics stellar-evolution warrickball
Account for correlations in Gaia measurements sblunt/orbitize enhancement sblunt
No error is showns when using meshblock/nx2=1 for 2D sims (and similar for 3D) parthenon-hpc-lab/parthenon bug pgrete
add deprecation warnings to results plotting methods sblunt/orbitize easy sblunt
[Documentation] Translation of tutorials from English to Polish | Tłumaczenie z angielskiego na polski DataverseLabs/pyinterpolate Good-First-Issue documentation help-needed kriging machine-learning poisson-kriging python semivariogram spatial-analysis spatial-interpolation SimonMolinsky
Deprecate changing solar-{x,y} CTYPE sunpy/sunpy Effort-Low Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest map python solar solar-physics sun sunpy dstansby
Use ReadImage and WriteImage functions where appropriate InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle dzenanz
MCBUR[12] TeamCOMPAS/COMPAS enhancement urgency_low reinhold-willcox
Confusing, overlapping TestHarness Arguments should be cleaned up idaholab/moose C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
Add Option To Always Print A TIMED_SECTION idaholab/moose C-Framework Good-first-issue P-normal T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation friedmud
Add a helpful error message to `GenericMap.submap()` for helioprojective-related NaNs sunpy/sunpy Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest map python solar solar-physics sun sunpy ayshih
shell mode: switch to pkg mode with ']' JuliaLang/julia REPL hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific timholy
ENH: check for minimum version of folium geopandas/geopandas enhancement martinfleis
Full support Of ROI (Regions of Interest) gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 help-wanted idl/gdl-only mapping netcdf objects plotting plplot programming-language pv-wave python scientific-computing scientific-visualization SkippySky
Ensure doctests are not providing sole coverage for any code scikit-hep/pyhf asymptotic-formulas closember cls frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow tests matthewfeickert
Change build system to use newer pyproject.toml approach fitbenchmarking/fitbenchmarking Enhancement Good-first-issue Maintenance AndrewLister-STFC
Add an option to stop the whole workflow for the first failed job DataBiosphere/toil aws common-workflow-language cwl gridengine intern kubernetes mesos pipeline python slurm wdl workflow adamnovak
Drag fit enhancement Qiskit/qiskit-experiments enhancement qiskit eggerdj
Change formatting style for printed output atomec-project/atoMEC atomic-physics density-functional-theory electronic-structure plasma-physics warm-dense-matter timcallow
Add metadata to standalone examples bokeh/bokeh bokeh data-visualisation interactive-plots javascript jupyter notebooks numfocus plots plotting python tag-component-docs tag-component-examples type-task visualisation visualization tcmetzger
Switch to using Typer over Click scikit-hep/pyhf CLI asymptotic-formulas build closember cls feat/enhancement frequentist-statistics help-wanted hep hep-ex high-energy-physics histfactory jax numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
create helper utilities for generating mean flow and demand files from previous runs IMMM-SFA/mosartwmpy enhancement thurber
Updating "file formats" docs for additional clarity? nanoporetech/megalodon basecalling documentation epigenetics guppy variant-calling lyijin
Migrate to importlib.resources files() (version 1.4 / Python 3.9) API snek5000/snek5000 cfd closember fluiddyn fluidsim jinja2 long-term nek5000 python simulation snakemake snek5000 workflow ashwinvis
Add METEOR metric PyTorchLightning/metrics New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch topic-Text stancld
OFTI should have a time warning sblunt/orbitize easy sblunt
Add verbose mode to `TimeSeries`? sunpy/sunpy Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest python solar solar-physics sun sunpy timeseries dstansby
Edit notebook metadata jupyter/notebook closember enhancement help-wanted jupyter jupyter-notebook notebook jtpio
Doc: `cupyx.profiler` needs to be added to the module list of API reference cupy/cupy catdocument cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priomedium python rocm scipy tensor kmaehashi
[BUG-REPORT] Issue converting object to string vaexio/vaex bigdata data-science dataframe feature-request hdf5 machine-learning machinelearning memory-mapped-file priority-low pyarrow python tabular-data visualization grafail
consolidate the describe / config caches in RunBundler bluesky/bluesky bluesky dataacquisition maintenance python tacaswell
add page size checks for sync/async request mode icesat2py/icepyx IS2HW_2022 closember community-driven hacktoberfest icesat-2 python3 JessicaS11
[Tracker] Implement all `numpy.*` APIs in CuPy cupy/cupy catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor kmaehashi
`spack location --build-dir` inconsistency spack/spack bug build-tools hpc impact-low linux macos package-manager python radiuss scientific-computing spack albestro
Include an integer `setindex` for `NamedTuple` JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific rafaqz
chunk_layer is memory-inefficient aqlaboratory/openfold alphafold2 enhancement help-wanted protein-structure pytorch gahdritz
Instructions on how to use core Stan directly in C++ stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics documentation stan rok-cesnovar
Consider adding binder mackelab/sbi bayesian-inference enhancement less-urgent likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference schmitts
Better operator dimension parameterisation qutip/qutip ENH python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack pierreguilmin
More CI compiler versions bcgsc/btllib algorithms bioinformatics bloom-filter cpp data-structures enhancement genome library python vlad0x00
Add an mBuild docs example of changing an existing box's dimensions and angles for the new mbuild.Box's structure. mosdef-hub/mbuild documentation mbuild molecular-dynamics molecular-simulation molecule-builder python bc118
GPU accelerated training not available during multitasking and model retraining catboost/catboost GPU big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial JHlozek
[Feature Request] Allow setting the `title` property of the label surrounding the `RadioItem` and `Checklist` choices. plotly/dash bioinformatics charting dash data-science data-visualization documentation-needed finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app Viech
Extend Callback Interface catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial ayulockin
[BUG] dashtable with pagination: tooltips appear in wrong place plotly/dash DataTable bioinformatics charting dash data-science data-visualization finance flask gui-framework julia jupyter modeling plotly plotly-dash productivity python r react rstats technical-computing web-app HeinerTholen
[BUG-REPORT] str.replace(..., regex=True) : can't use capture group in repl str vaexio/vaex bigdata bug data-science dataframe enhancement hdf5 machine-learning machinelearning memory-mapped-file priority-medium pyarrow python tabular-data visualization Binger-cn
Is "do_spin_temp" a valid parameter for run_coeval? 21cmfast/21cmFAST context-python-wrapper priority-medium type-documentation oscarhdz7
Add docs that show new features of the Results class sblunt/orbitize easy enhancement semaphoreP
Test default default cases for strongly typed enum serialization InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeCoverage typeTesting jhlegarreta
cleanup switch in hdf5_fun.cpp gnudatalanguage/gdl Low-priority antlr astronomy cleanup data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization alaingdl
Issues with compiling SU2 on Windows 10 su2code/SU2 c-plus-plus cfd documentation enhancement flow fluid fluid-dynamics hpc opensource optimization physics python simulation GabrieleMorvillo
Support more interpolation methods in `cupy.percentile` and `cupy.quantile` cupy/cupy contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor takagi
Document somewhere how to make a new release atomec-project/atoMEC atomic-physics density-functional-theory electronic-structure enhancement not-critical plasma-physics warm-dense-matter DanielKotik
Representations for objects mad-lab-fau/tpcp algorithms biosignals data-management data-science help-wanted machine-learning python AKuederle
Port NumPyro introductory examples to Pyro pyro-ppl/pyro Examples bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference eb8680
Low-memory attention a little slow aqlaboratory/openfold alphafold2 enhancement help-wanted protein-structure pytorch gahdritz
Support build avatars sourced from non-GitHub URLs nextstrain/auspice enhancement huddlej
MCMC burn in/number of steps tutorial sblunt/orbitize easy enhancement sblunt
[REF] Paths Variable in ProfileConverter tumcms/Open-Infra-Platform boost building-information-modelling ifc infrastructure okstra point-cloud refactoring jschlenger
[REF] noexcept(false) in IfcGeometryConverter tumcms/Open-Infra-Platform boost building-information-modelling ifc infrastructure okstra point-cloud refactoring jschlenger
Consider merging "Usage" and "Scripts" into a single documentation entry ivadomed/ivadomed documentation jcohenadad
objectid takes arbitrarily long JuliaLang/julia Hacktoberfest hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific cooijmanstim
Replace uses of tempname in CI by mktemp JuliaLang/julia ci hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific Keno
Contribute ! blackjax-devs/blackjax bayesian-inference community hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Naming Convention for CI Tests ECP-WarpX/WarpX cleaning component-tests gpu laser particle-in-cell physics pic plasma research simulation EZoni
Runtime of some tests could be reduced by reducing num simulations mackelab/sbi bayesian-inference enhancement hackathon likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference janfb
glottomap: add option to show/hide NA SietzeN/glottospace SietzeN
missing keyword ELAPSED in SYSTIME() gnudatalanguage/gdl WIP antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization alaingdl
Remove whitespaces before scope resolution operators InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle jhlegarreta
Optimizer classes should not print non-self member variables InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeStyle jhlegarreta
Add test for on the fly event generation nu-radio/NuRadioMC enhancement neutrino radio simulation shallmann
Use matplotlib's object oriented interface in our crossspectrum.plot and other places StingraySoftware/stingray astronomy astrophysics blackhole blackholes data-analysis enhancement fourier-analysis fourier-transform hacktoberfest help-wanted neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries matteobachetti
NameError/AttributeError suggestions in Python 3.10 error messages ipython/ipython closember data-science hacktoberfest ipython jupyter notebook python repl tirkarthi
Feature request: Accept a URL to an input file kanaverse/kana bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly slowkow
Address fixtures that are not being used tardis-sn/tardis astrophysics python radiative-transfer science supernova testing-vertical_traffic_light atharva-2001
Request: Add build compiling with `c++17` to github actions. InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeInfrastructure phcerdan
Better introduction to parametric types in the manual JuliaLang/julia doc hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific types-and-dispatch adigitoleo
Add equivalent of cycle_basis that returns an edge list Qiskit/rustworkx dag enhancement graph graph-theory python rust IvanIsCoding
[Tracker] Implement all `scipy.*` APIs in CuPy cupy/cupy catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor kmaehashi
Add missing parameters to the `nan` functions cupy/cupy catnumpy-compat contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor takagi
Implement reordering function to assess feature significance? jameschapman19/cca_zoo canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca JohannesWiesner
Error is thrown when Dialog has no buttons jupyterlab/jupyterlab bug jupyter jupyterlab mnowacki-b
Comment option for CSVTable jupyterlab/jupyterlab enhancement jupyter jupyterlab pkgcsvviewer barronh
Cylinder actor needs to use repeat_primitives by default fury-gl/fury 3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation typeEnhancement skoudoro
transpose a databox lanl/spiner enhancement help-wanted Yurlungur
Separate random proposals and the RMH acceptance step blackjax-devs/blackjax bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
New method to fetch data along a given trajectory euroargodev/argopy argo argo-data argo-floats argo-traj enhancement oceanography python stale gmaze
recreate DEM comparison notebook icesat2py/icepyx closember community-driven hacktoberfest icesat-2 python3 JessicaS11
More image metrics PyTorchLightning/metrics New-metric analyses data-science deep-learning enhancement help-wanted machine-learning metrics python pytorch topic-Image Borda
Implement IO support for OpenEXR Layout by Fichet et al. (2021). colour-science/colour API Feature Good-First-Issue P2 color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets KelSolaar
`" >Allow packing by `{"advected"}` rather than using an explicit `std::vector` parthenon-hpc-lab/parthenon enhancement pgrete
Cleanup HDF5 ifdef logic for restart interfaces parthenon-hpc-lab/parthenon enhancement pgrete
WIP: Experiment with dropping too-old events bluesky/bluesky bluesky dataacquisition python tacaswell
Hide Contextual Help jupyterlab/jupyterlab enhancement jupyter jupyterlab pkginspector CptTrips
Getting starting cells for parcels implicitly assumes that inlet is located along x=0 coordinate DeltaRCM/pyDeltaRCM help-wanted amoodie
Antenna model list in the documentation needs updating nu-radio/NuRadioMC help-wanted neutrino radio simulation shallmann
Support measurments of observables with degenerate eigenvalues qutip/qutip python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack Sola85
Define additional notations in Docs JulianKarlBauer/mechkit continuum-mechanics documentation help-wanted mechanics mechanics-of-materials python JulianKarlBauer
Missing SVs tjiangHIT/cuteSV oxford-nanopore pacbio-data structural-variation bnoyvert
Particle Histogram 2D ECP-WarpX/WarpX component-diagnostics gpu help-wanted laser particle-in-cell physics pic plasma research simulation ax3l
DOC: document saving a GeoDataFrame with more GeoSeries to a file geopandas/geopandas documentation martinfleis
write deterministic resamplers and samplers tbrown122387/pf help-wanted particle-filter statistical-methods statistical-models statistics tbrown122387
Variable `columns` is not defined tardis-sn/carsus astronomy atomic-database bug priority-low python atharva-2001
CSVY Parsers Should Be Incorporated to Model Readers tardis-sn/tardis astrophysics easy python radiative-transfer science supernova marxwillia
[ENH]: FancyArrow in 3D matplotlib/matplotlib Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-arrow topic-mplot3d wx patquem
Add "completely symmetric" fourth-order tensors to notation.ExplicitConverter JulianKarlBauer/mechkit continuum-mechanics enhancement mechanics mechanics-of-materials python JulianKarlBauer
better calling convention for large numbers of arguments JuliaLang/julia codegen hacktoberfest hpc julia julia-language julialang latency machine-learning numerical programming-language science scientific JeffBezanson
Export `DocumentSet` to bibtex NLeSC/litstudy bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews stijnh
Export `DocumentSet` to RIS NLeSC/litstudy bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews stijnh
Support WoS (Web of Science) NLeSC/litstudy bibliographics bibliometric-analysis bibliometric-visualization bibliometrics enhancement help-wanted jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews stijnh
SBP coefficients of Albin & Klarmann (2016) ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Output font size not changing for code cells jupyterlab/jupyterlab bug jupyter jupyterlab pkgapputils mpauper
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found. (Ubuntu related?) 3fon3fonov/exostriker exoplanet exoplanets external-package-problem multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling unclear 3fon3fonov
DEP: change default of atol in `scipy.sparse.linalg.*` scipy/scipy algorithms closember deprecated python scientific-computing scipy scipy.sparse.linalg h-vetinari
[BUG-REPORT] Vaex `to_dask_array` fails `AttributeError: 'ValueError' object has no attribute 'numpy'` vaexio/vaex bigdata data-science dataframe hdf5 help-wanted machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization Ben-Epstein
add missing_only=True to all imputers to use in combination with variables=None feature-engine/feature_engine data-science easy enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn solegalli
Move CSVY writer from custom abundance widget to io tardis-sn/tardis astrophysics io python radiative-transfer science supernova Rodot-
make paths in "File browser" editable? jupyterlab/jupyterlab enhancement help-wanted jupyter jupyterlab pkgfilebrowser mathause
Wrong use of 'command -v' in setup-env.csh spack/spack bug build-tools hpc impact-low linux macos package-manager python radiuss scientific-computing shell-support spack a-denis
Repl session uuid JuliaLang/julia REPL feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific jariji
More concise error message with feature name, not only feature_idx catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial fingoldo
AstropyDepreciationWarning riogroup/SORA documentation effort_low GianmarcoBroilo
Warn user if Nboot > Npermutations privong/pymccorrelation bootstrapping-statistics correlation-coefficient enhancement monte-carlo privong
Extracting asc/descending tracks in high latitudes (regions 4 and 11) icesat2py/icepyx closember community-driven enhancement hacktoberfest icesat-2 python3 s2002365
conda-forge download statistics icesat2py/icepyx closember community-driven documentation hacktoberfest icesat-2 python3 JessicaS11
streamlit's webserver not working when using BAZEL for installation bug streamlit/streamlit areadeployment data-analysis data-science data-visualization deep-learning developer-tools machine-learning priorityP3 python streamlit typebug rubenverhack
Enable Sky Projection for `plot_fit` PetroFit/petrofit Enhancement Good-First-Issue Visualization fitting galfit petrofit petrosian python sersic robelgeda
Consistent treatment of `nan` in summary functions zdelrosario/py_grama enhancement uq zdelrosario
[Bug]: Large file size when using fill_between() matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tgrohens
MICADO Docs, show how to change Seeing with AnisoCADO PSF AstarVienna/irdb documentation help-wanted AstarVienna
[Doc]: Arguments of FFMpegFileWriter not clear. matplotlib/matplotlib Documentation Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-animation wx baloe
Expand retworkx-core testing Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
expand non_fitted_error_checks for methods get_feature_names_out and inverse transform feature-engine/feature_engine data-science enhancement feature-engineering feature-extraction feature-selection machine-learning python scikit-learn solegalli
METIS calibration pinhole mask AstarVienna/ScopeSim_Templates enhancement astronomyk
Properly handle edge cases for greedy_modularity_communities networkx/networkx Good-First-Issue complex-networks graph-algorithms graph-analysis graph-generation graph-theory graph-visualization python type-Bug-fix MridulS
Reduce template parameters in `Swarm::AllocateBoundariesImpl_` parthenon-hpc-lab/parthenon C++17 refactor brryan
Remove INSFVMomentumFriction idaholab/moose C-Modules/Navier-Stokes Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation lindsayad
Add documentation on optimizing transfer performance idaholab/moose C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation GiudGiud
Add documentation for XDA/XDR format and/or link to existing documentation idaholab/moose C-Documentation C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation GiudGiud
Map remaining pymatgen/atomate sets and workflows jacksund/simmate enhancement jacksund
STYLE replace flake8-rst with something maintained pandas-dev/pandas Code-Style alignment data-analysis data-science flexible pandas python MarcoGorelli
Widgets code shows up during the commandline tardis-sn/tardis astrophysics bug-lady_beetle python radiative-transfer science supernova wkerzendorf
option+letter on OSX with tkagg give non-alpha numeric rather than alt- matplotlib/matplotlib Difficulty-Medium GUI-MacOSX GUI-tk Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tacaswell
docs: broken image links on QC page nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tbug virus victorlin
`std::set` instead of `std::vector`? parthenon-hpc-lab/parthenon discussion Yurlungur
Add Yamazaki et al (2020) terrain-following interpolation algorithm euroargodev/argopy argo argo-data argo-floats argo-traj enhancement oceanography python stale gmaze
Explicitly document the `missing` behavior for all functions that handle `missing` values JuliaLang/julia doc hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific CameronBieganek
Limit max number of Simbad rows snad-space/ztf-viewer bug hombit
Move more connected components functions to retworkx-core Qiskit/rustworkx dag enhancement graph graph-theory python rust enavarro51
`tardis/analysis.py` uses Pandas's deprecated `.ix` method tardis-sn/tardis astrophysics bug-lady_beetle python radiative-transfer science supernova epassaro
Document LineStrings and their use JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization asinghvi17
Restructure Unit Tests parmoo/parmoo blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization thchang
Reduce Duplicate Code in Unit Tests parmoo/parmoo blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization thchang
Missing functions from DTLZ libraries parmoo/parmoo blackbox-optimization bug mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization thchang
A GUI for creating MOOPs parmoo/parmoo blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization thchang
FITS reading should emit a warning when memory mapping is explicitly requested but not successful sunpy/sunpy Effort-Medium Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy hacktoberfest io python solar solar-physics sun sunpy ayshih
[Feature Request] Force users to select a default output directory rather than creating a 'VesselVio' directory on the desktop JacobBumgarner/VesselVio analysis enhancement open-source visualization ElisabethKugler
Handle 7- and 9-parameter Hipparcos fits sblunt/orbitize enhancement help-wanted long-term sblunt
Writing tutorials pymedphys/pymedphys dicom help-wanted medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy SimonBiggs
Write a downloader function for data tardis-sn/carsus astronomy atomic-database feature python epassaro
Set notated input parameters not being recognized DeltaRCM/pyDeltaRCM documentation help-wanted Lvulis
Distributed.jl should verify Julia version between primary-worker JuliaLang/julia feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical parallel programming-language science scientific Naikless
Add alpha-DPI as a backend in orbitize sblunt/orbitize enhancement sblunt
2022.04.0: sphinx warnings `reference target not found` dask/dask dask documentation numpy pandas pydata python scikit-learn scipy kloczek
Update relevant tests to use `sort_results` argument dask/dask dask dataframe numpy pandas pydata python scikit-learn scipy tests pavithraes
Implement multipathfinder blackjax-devs/blackjax bayesian-inference enhancement hamiltonian-monte-carlo probabilistic-programming sampler sampling-methods junpenglao
`RotatedSunFrame` should accept an `astropy.time.TimeDelta` object as `durations=` input sunpy/sunpy Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Low astronomy astropy coordinates hacktoberfest python solar solar-physics sun sunpy Cadair
Add a way for the JP2 get_header function to get the comments sunpy/sunpy Effort-Medium Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest io python solar solar-physics sun sunpy nabobalis
For all Windows users, please read!!! 3fon3fonov/exostriker exoplanet exoplanets multi-planet-systems periodogram radial-velocity transit-modeling ttv-modeling 3fon3fonov
poisson_conf_interval 'kraft-burrows-nousek' fails unexpectedly astropy/astropy Bug Effort-low Package-novice astronomy astrophysics astropy python science stats hamogu
Discuss `xlims!`, `ylims!`, and `limits!` in the Basic Tutorial? JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization CameronBieganek
Standardize reporting known inconsistencies in `dask.dataframe` API dask/dask dask documentation numpy pandas pydata python scikit-learn scipy rrpelgrim
Expand test coverage openmopac/mopac electronic-structure help-wanted molecular-orbital-theory quantum-chemistry semiempirical-methods godotalgorithm
Use Artifact system to ship test .root files JuliaHEP/UnROOT.jl cern-root hacktoberfest help-wanted hep hep-ex high-energy-physics julia particle-physics Moelf
Inconsistent rounding for parameters in savename JuliaDynamics/DrWatson.jl bug hacktoberfest project-assistant project-management science science-research setup-tool simulations cumberworth
Add a pretty printer that returns information that is useful for the user blackjax-devs/blackjax bayesian-inference documentation enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Improve the documentation blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
User-defined random number generator jmejia8/Metaheuristics.jl constrained-optimization decision-making differential-evolution enhancement hypervolume multi-objective-optimization nsga2 optimization pso simulated-annealing mohamed82008
Only upload failed images on failure matplotlib/matplotlib Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tacaswell
Outdated clade schematic used on nextclade frontpage nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna influenza ncov needs-triage neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tbug virus corneliusroemer
inconsistency in FBA flavour invocations opencobra/cobrapy biochemistry bioinformatics cell-design cobra computational-biology enhancement flux help-wanted metabolic-models metabolic-network metabolism modeling python sbml sbml-model sbml-simulation strain-engineering systems-biology lptolik
[Bug]: Axes.indicate_inset[_zoom](linewidth=...) doesn't affect connectors matplotlib/matplotlib Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx QuLogic
ENH: sparse matrix assigning should be optimized rather than using densified matrixes scipy/scipy algorithms closember enhancement python scientific-computing scipy scipy.sparse likaiwen123
Suspend OGLE-III snad-space/ztf-viewer enhancement pruzhinskaya
Fix PDBList access to servers other than RCSB biopython/biopython Bug bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
Extend PDBList obsolete handling to mmCIF and mmtf formats as well as assemblies biopython/biopython Bug Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
Update argument handling in PDBList.py, possibly by creating a new module. biopython/biopython Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
Access to Alphafold database of 3D modules in a PDBList-like interface biopython/biopython Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
Add example with non-ascii characters to demonstracte Unicode support quantling/pyndl documentation enhancement derNarr
podman events different than docker events containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci joachimBurket
Implement remaining numpy functions zdelrosario/py_grama uq zdelrosario
Utility to change model title zdelrosario/py_grama enhancement uq zdelrosario
Polymer Builder issue mosdef-hub/mbuild low-priority mbuild molecular-dynamics molecular-simulation molecule-builder python CalCraven
Energy Minimize mosdef-hub/mbuild documentation mbuild molecular-dynamics molecular-simulation molecule-builder python CalCraven
How to pass compression level to_parquet, to_zarr [docs] dask/dask dask documentation numpy pandas pydata python scikit-learn scipy ncclementi
ValueErrors that should be TypeErrors zdelrosario/py_grama invalid uq mstites
Add more viz plot types parmoo/parmoo blackbox-optimization enhancement mathematical-software multicriteria-optimization multiobjective multiobjective-optimization numerical-optimization python3 response-surface-methodology simulation-based-optimization simulation-optimization surrogate-based-optimization viz HyrumDickinson
Filter for un-mutated bases nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus emmahodcroft
Add final extraction directory size and total file count to reports SMI/SmiServices enhancement rkm
Dialog hangs if IBodyWidget.getValue() throws an error jupyterlab/jupyterlab bug jupyter jupyterlab pkgapputils tagExtensions herjiict
Slow calculation time for IfcSine and IfcCosine tumcms/Open-Infra-Platform IFC boost building-information-modelling evaluation example-files ifc infrastructure okstra point-cloud quality_of_life Elvira2227
Missing documentation / docstrings zdelrosario/py_grama enhancement uq mstites
Code duplication within eval functionality & unittests zdelrosario/py_grama uq mstites
Jax analog for FCLayers scverse/scvi-tools cite-seq deep-generative-model deep-learning enhancement human-cell-atlas jax scrna-seq scverse single-cell-genomics single-cell-rna-seq variational-autoencoder variational-bayes RK900
README budges. BiomedSciAI/fuse-med-ml ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision mosheraboh
how to specify db-load-mode in precomputed_alignments_mmseqs.py aqlaboratory/openfold alphafold2 protein-structure pytorch lzhangUT
Create fully pinned requirements file for bug-fix branches matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tacaswell
Outlier filter for live plots LiberTEM/LiberTEM GUI UX/DX data-processing electron-microscopy image-processing python uellue
Performance best practices docs page parthenon-hpc-lab/parthenon documentation help-wanted Yurlungur
Avoid logger info in CCDData.read when unit specifies matches that in FITS file astropy/astropy Feature-Request astronomy astrophysics astropy nddata python science astrofrog
Replace custom deepdiff wrapper scripts with deepdiff CLI nextstrain/augur easy-problem enhancement huddlej
ENH: Add osx-arm executable to bioconda nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain package-nextalign_cli package-nextclade_cli research rna sars-cov-2 science sequences sequencing strain tfeat virus corneliusroemer
Open/limit FileDialog.getExistingDirectory from a subdir of root jupyterlab/jupyterlab enhancement jupyter jupyterlab pkgfilebrowser suganya-sk
Bio.PDB.PSEA should use a temporary directory to run the third-party tool biopython/biopython Enhancement bioinformatics biopython dna genomics help-wanted phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
report sketch progress from `sketch fromfile` sourmash-bio/sourmash bioinformatics enhancement fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling bluegenes
pgstar Controls MESAHub/mesa astronomy astrophysics binary-evolution enhancement fortran stellar-astrophysics stellar-evolution ericasaw
Drop the name of returning, only keep type for single returning method siavash-saki/tesspy documentation Zeroto521
reduce the size of photosphere in the RPacketPlotter Plot tardis-sn/tardis astrophysics python radiative-transfer science supernova visualization jayantbhakar
Is there a good way to issue a warning from a task? dask/dask dask enhancement numpy pandas pydata python scikit-learn scipy ian-r-rose
Mismatch between documentation and REST API containers/podman Good-First-Issue HTTP-API containers docker documentation kind/bug kubernetes linux oci benoitf
Print Source Label in Segmentation Plot PetroFit/petrofit Enhancement Good-First-Issue fitting galfit petrofit petrosian python sersic robelgeda
Add new metric - example + doc BiomedSciAI/fuse-med-ml ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision mosheraboh
Add an interactive event viewer graphnet-team/graphnet astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch RasmusOrsoe
Save widget settings along with the widget cosmo-epfl/chemiscope component-jupyter component-python hacktoberfest materials-science molecule visualization web rosecers
docs: Natgrads notebook thomaspinder/GPJax bayesian-inference documentation enhancement gaussian-processes jax machine-learning probabilistic-programming daniel-dodd
Auto-Update setup.py's release version upon github release ianfhunter/GNOLL Feature-Request Python board-game c code-quality cpp dice dice-notation dice-roller dice-rolls go golang haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Allow tables to correct hull energies jacksund/simmate enhancement mctaggartdh
[Bug]: crash due to backend issue in ipython session started explicitly with InteractiveShell matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx zpincus
Unfriendly error message in CLI: "invalid Zip archive: Could not find central directory end" nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov needs-triage neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tbug virus sacundim
Add option to profile code modules and examples graphnet-team/graphnet astrophysics deep-learning feature gpu graph-neural-network high-energy-physics machine-learning neural-network neutrino-oscillations neutrino-physics neutrinos particle-physics physics-analysis python pytorch MortenHolmRep
Test: d4!! ianfhunter/GNOLL Python Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Test: Symbolic Arithmetic ianfhunter/GNOLL Test-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
ENH: Output feature table for use during Genbank submission nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain package-nextalign package-nextclade research rna sars-cov-2 science sequences sequencing strain tfeat ttalk virus corneliusroemer
ARIA labels on main area widget are incorrect (always referring to a notebook) jupyterlab/jupyterlab bug jupyter jupyterlab pkgapputils tagAccessibility krassowski
[ENH]: support PySide6's `snake_case` matplotlib/matplotlib Difficulty-Medium GUI-Qt Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx bersbersbers
Improve the ecological analysis method mzy2240/ESA automation contingency-analysis enhancement esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability mzy2240
Versioning our documentation blackjax-devs/blackjax bayesian-inference documentation enhancement hamiltonian-monte-carlo probabilistic-programming sampling-methods junpenglao
Add "How to distribute gradient computation?" document blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Add "How to write and sampling loop?" document blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Add "How to run adaptation for several chains?" document blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Speed up `draw_xgi_nodes` and `draw_xgi_hyperedges` xgi-org/xgi higher-order-networks hypergraphs improve network-science viz nwlandry
Publish the doc for each PR individually blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
RFE: Add tracking/monitoring/events of what will/is currently performed by `kube play` command containers/podman Good-First-Issue containers docker kind/feature kube kubernetes linux oci podman-desktop benoitf
`cupyx.scipy.sparse.block_diag` working with cupy sparse matrix on GPU cupy/cupy catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor tagerjump
Sparse Eigensolver issue. qutip/qutip BUG medium python quantum quantum-computing quantum-information quantum-mechanics quantum-optics quantum-toolbox qutip unitaryhack Ericgig
Add weights for the pearson, spearman, and r2_score PyTorchLightning/metrics analyses data-science deep-learning enhancement machine-learning metrics python pytorch DomInvivo
Power/Exponent ianfhunter/GNOLL Feature-Request board-game c core cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Labels for PatchCollection do not show matplotlib/matplotlib Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-collections-and-mappables topic-legend wx Robotatron
Duplicate and non-existing Doxygen groups InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation jhlegarreta
Make the `itkMultiLabelSTAPLEImageFilterTest` quantitative InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting jhlegarreta
Save scientific work citations to a BibTeX file for ease of use in Doxygen InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation jhlegarreta
Easy Means of Enabling Swap Memory on Podman Machine (MacOS, maybe others) containers/podman Good-First-Issue containers docker kind/feature kubernetes linux oci podman-machine jamesmikesell
Add validation of profile UUID to the `Profile` class and `verdi setup` aiidateam/aiida-core aiida computational-science data-provenance database priority/nice-to-have provenance scheduler ssh topic/config topic/verdi type/enhancement workflow workflow-engine workflows sphuber
No error message in matplotlib.axes.Axes.legend() if there are more labels than handles matplotlib/matplotlib API-argument-checking Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-legend wx haferburg
Auto-Detect when changing params in `dataset_balanced_division_to_folds(reset_split=False)` BiomedSciAI/fuse-med-ml ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision SagiPolaczek
[FR] allow orthogonal parameters in pyro.param pyro-ppl/pyro bayesian bayesian-inference deep-learning discussion enhancement low-priority machine-learning probabilistic-modeling probabilistic-programming python pytorch variational-inference martinjankowiak
list available EdgeStats in docs xgi-org/xgi documentation higher-order-networks hypergraphs network-science maximelucas
Store distance from on-axis when calculated in BaseSource init DavidT3/XGA astronomy astrophysics enhancement galaxy-clusters heasoft sas x-ray x-ray-astronomy xga xmm xmm-observations xmm-science-analysis xspec DavidT3
[ENH]: Add default kwargs values if figure.suptitle(t, **kwargs) to rcParams and inherit from there. matplotlib/matplotlib Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-rcparams topic-ticks-axis-labels wx frank-klein-schaarsberg-wb
create documentation project on Read the Docs BiomedSciAI/fuse-med-ml ai cmmd collaboration ct deep-learning documentation enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision SagiPolaczek
Remove support for "installing" Parthenon as a library parthenon-hpc-lab/parthenon refactor pgrete
Add a "How to use forward-mode differentiation instead of backward-mode differentiation" tutorial blackjax-devs/blackjax bayesian-inference documentation hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Progress Bar Float Error streamlit/streamlit data-analysis data-science data-visualization deep-learning developer-tools featurest.progress machine-learning priorityP4 python statusconfirmed streamlit typebug spencervoorend
DOCS: make example project CamelCase instead of it having space in its name JuliaDynamics/DrWatson.jl documentation hacktoberfest project-assistant project-management science science-research setup-tool simulations math4mad
Web: indicate that a download has been initiated nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus chaoran-chen
HyMD profiling Cascella-Group-UiO/HyMD chemistry coarse-grained hybrid-particle-field molecular-dynamics optimization physics hmcezar
"default None" in docstring parameter descriptions considered harmful pvlib/pvlib-python documentation help-wanted photovoltaic python renewable-energy renewables solar-energy kandersolar
Transitive closure Qiskit/rustworkx dag enhancement graph graph-theory python rust LaurentBergeron
Adding UNO cards ianfhunter/GNOLL Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg CodeWAdi
Add option to close an `Axis3`'s outline box JuliaPlots/Makie.jl Makie gpu graphics julia julia-language plotting visualization fatteneder
Implement multinomial HMC blackjax-devs/blackjax bayesian-inference hamiltonian-monte-carlo help-wanted important mcmc probabilistic-programming sampler sampling-methods rlouf
DOC: Improve the register_index_accessor Documentation pandas-dev/pandas Accessors Docs alignment data-analysis data-science flexible pandas python achapkowski
Replace `prepare_for_sbi` with separate calls to for prior and simulator in all tutorials mackelab/sbi API-changes bayesian-inference likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference jecampagne
IO ImageBase tests not exercised InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting jhlegarreta
Add (Kernelized) Stein discrepancy diagnostic blackjax-devs/blackjax bayesian-inference diagnostics enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods rlouf
Add Stein Variational Gradient Descent blackjax-devs/blackjax bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampler sampling-methods vi rlouf
Add Macros from various games ianfhunter/GNOLL Low/No-Code Macro-Request Multiple-Assignees board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Simplify `minimize_lbfgs` and `pathfinder_adaptation` blackjax-devs/blackjax bayesian-inference enhancement hamiltonian-monte-carlo help-wanted probabilistic-programming sampling-methods junpenglao
Information for new contributors pandas-dev/pandas alignment data-analysis data-science flexible pandas python noatamir
Enable evaluation of multiple inputs at once on a single polynomial MrMinimal64/multivar_horner enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3 KPJoshi
json-file log-driver not producing valid json containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci andrin55
in pro RESOLVE_ROUTINE, new keyword SKIP_EXISTING is missing gnudatalanguage/gdl antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization alaingdl
More gates CQCL/qujax enhancement jax python quantum SamDuffield
Documentation at docs.einsteinpy.org needs updates einsteinpy/einsteinpy documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics JeS24
prolongation does not preserve min/max values parthenon-hpc-lab/parthenon bug help-wanted BenWibking
Allow `dict_list` to return other types than dictionaries JuliaDynamics/DrWatson.jl enhancement hacktoberfest project-assistant project-management running-listing science science-research setup-tool simulations Datseris
improve pjit pytree error involving Nones (and PytreeLeafs) google/jax better_errors jax mattjj
Add Macro: Fate of the Norns - Runes ianfhunter/GNOLL Macro-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Geodesic Plotting improvements einsteinpy/einsteinpy general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion plotting space-physics JeS24
A forecasting/predicting example would be useful biaslab/RxInfer.jl documentation SebastianCallh
Provide option to move the legend and logo jgieseler/solarmach enhancement esa heliophysics spacephysics spaceweather jgieseler
Progress bar to be moved from inner loops to outer loops kazewong/flowMC enhancement jax mcmc normalizing-flows stat marylou-gabrie
[Bug]: Cannot use empty markers in scatter matplotlib/matplotlib API-consistency Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx Atcold
Make automatic validation for all scikit-learn public functions scikit-learn/scikit-learn Meta-issue Sprint Validation data-analysis data-science machine-learning python statistics glemaitre
BUG: freqz does not work on multi-dimensional array, despite what documentation claims scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.signal sliedes
Adding some basic VI approximation and fitting routine blackjax-devs/blackjax bayesian-inference enhancement hamiltonian-monte-carlo help-wanted important probabilistic-programming sampling-methods vi junpenglao
DOC: comparison of optimizers in optimization guide scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.optimize dschmitz89
add `isort` as a pre-commit hook BiomedSciAI/fuse-med-ml ai cmmd collaboration ct deep-learning enhancement fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision SagiPolaczek
Update Image Extraction Microservices Description SMI/SmiServices documentation darshad-github
Add new example Jupyter notebooks / edit old ones einsteinpy/einsteinpy documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics JeS24
help,/files does not show open files gnudatalanguage/gdl Low-priority antlr astronomy data-analysis dicom eigen3 enhancement fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization brandy125
Domain diagnostics sxs-collaboration/spectre nilsvu
Neutron star surface finder algorithm sxs-collaboration/spectre nilsvu
Is azimuth to be specified from true or magnetic north? pvlib/pvlib-python documentation help-wanted photovoltaic python renewable-energy renewables solar-energy ertong
Degree to radian pyomeca/biorbd Ipuch
Negative weights for KDE lzkelley/kalepy enhancement kde kernel-density-estimation pdfs python python3 resample resampling statistical-analysis statistics Pablobala
`podman manifest create` should support `--format` containers/podman Good-First-Issue containers docker kind/feature kubernetes linux oci jlebon
lo_en can equal hi_en in evselect_image DavidT3/XGA astronomy astrophysics bug galaxy-clusters heasoft sas x-ray x-ray-astronomy xga xmm xmm-observations xmm-science-analysis xspec DavidT3
Add confirmation email and other fields to form hpc-social/map community high-performance-computing hpc map alansill
[ENH]: Warn when a SymLogScale receives values that are all in the linear regime matplotlib/matplotlib Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx timhoffm
MAINT: HiGHS build flag cleanup scipy/scipy Build-issues algorithms closember maintenance python scientific-computing scipy mckib2
z as die symbol does not work with percentile dice ianfhunter/GNOLL board-game bug c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Setup SonarCloud for C ianfhunter/GNOLL C C++ Feature-Request board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell help-wanted java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Readme Badges should link to documentation for that language ianfhunter/GNOLL Low/No-Code board-game c cpp dice dice-notation dice-roller dice-rolls go golang hacktoberfest haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
Dates round/floor/ceil arguments switched JuliaLang/julia dates hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific jariji
Consider adding machine provider prefix to ssh keys containers/podman Good-First-Issue containers docker kind/feature kubernetes linux oci arixmkii
[ENH]: Add setter/getter methods for all keyword parameters to Figure.__init__ matplotlib/matplotlib Difficulty-Easy Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tacaswell
[ENH]: "Road sign" boxstyle/annotation matplotlib/matplotlib Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-annotation wx oscargus
Define better error message for container name conflicts with "external" storage containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci baude
Representing gradient of constraints as tangents on a power manifold JuliaManifolds/Manopt.jl enhancement help-wanted julia manifolds manopt optimization mateuszbaran
Helper functions for arithmetic on MSDS colour-science/colour Discussion Feature Good-First-Issue color color-science color-space color-spaces colorspace colorspaces colour colour-science colour-space colour-spaces colourspace colourspaces data dataset datasets python spectral-data spectral-dataset spectral-datasets tjdcs
BUG: Wrong (?) documentation in geopandas.sindex.SpatialIndex.query geopandas/geopandas bug documentation tqa236
`eachindex` should throw `DimensionMismatch` for differently sized tuples JuliaLang/julia bug correctness-bug-⚠ hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific cafaxo
Remove or Implement VTK Outputs parthenon-hpc-lab/parthenon forrestglines
Compute ADM quantities in initial data sets sxs-collaboration/spectre nilsvu
Kerr in harmonic coordinates sxs-collaboration/spectre nilsvu
target completeness should be cached dsavransky/EXOSIMS dsavransky
Check that `ParameterInput` is the same on every rank parthenon-hpc-lab/parthenon bug help-wanted Yurlungur
CLN: Use dedup_names in all instances where duplicate column names are renamed pandas-dev/pandas Clean IO-HTML alignment data-analysis data-science flexible pandas python datapythonista
Add a screenshot for visually showing where the areas of the shell are located jupyterlab/jupyterlab documentation jupyter jupyterlab jtpio
Both completer and document search event handlers get dispatched on Esc jupyterlab/jupyterlab bug jupyter jupyterlab pkgcompleter pkgdocumentsearch krassowski
BUG: JSON serialization with orient split fails roundtrip with MultiIndex pandas-dev/pandas Bug IO-JSON alignment data-analysis data-science flexible pandas python datapythonista
Command palette gets re-rendered even if hidden jupyterlab/jupyterlab bug jupyter jupyterlab tagPerformance krassowski
Migrate `steiner_tree()` and `metric_closure()` to rustworkx-core Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
fix paths of image urls ianfhunter/GNOLL Low/No-Code board-game bug c cpp dice dice-notation dice-roller dice-rolls go golang haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg ianfhunter
dev: Unit tests on `GaussianDistribution` object. thomaspinder/GPJax bayesian-inference enhancement gaussian-processes jax machine-learning probabilistic-programming daniel-dodd
Check initialization values in tests InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeTesting jhlegarreta
List all plugins within JupyterLab jupyterlab/jupyterlab enhancement help-wanted jupyter jupyterlab fcollonval
Multidimensional version of `RandomShuffle` and `BlockShuffle`. JuliaDynamics/TimeseriesSurrogates.jl enhancement hacktoberfest hypothesis-testing julia method-request nonlinear-time-series surrogate surrogates timeseries kahaaga
username() function (analogous to homedir()) JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific speculative stevengj
Allow more than one structure viewer in structure-only mode cosmo-epfl/chemiscope component-jupyter component-structure hacktoberfest materials-science molecule visualization web Luthaf
Please switch from pytest-tornasync to pytest-jupyter jupyterlab/jupyterlab jupyter jupyterlab maintenance frenzymadness
[Bug]: host's /etc/hosts file overrides private network dns settings in podman containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci hcldan
[MNT]: Specify ordering in file in gallery folder matplotlib/matplotlib Difficulty-Medium Documentation-build Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx story645
WEB: Better management of releases in the pandas home page pandas-dev/pandas Web alignment data-analysis data-science flexible pandas python datapythonista
Try out occupancy API for all kernels and see if it improves performance cholla-hydro/cholla enhancement alwinm
Sorting problem on dates hpc-social/jobs hpc hpc-social jobs jobs-board opportunities alansill
Rename coupled() routine to avoid confusion idaholab/moose C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation GiudGiud
descrip() has extra spaces statdivlab/rigr low-priority adw96
BUG: _validate_setitem_value fails to raise for PandasArray pandas-dev/pandas Bug ExtensionArray Indexing alignment data-analysis data-science flexible pandas python jbrockmendel
Documentation overhaul einsteinpy/einsteinpy documentation general-relativity geodesics gravitational-physics hacktoberfest orbital-simulation perihelion space-physics JeS24
no order argument in neighbors() xgi-org/xgi higher-order-networks hypergraphs improve network-science maximelucas
Add typing hints to all methods Autostronomy/AstroPhot astronomy documentation python pytorch science-research scientific-computing ConnorStoneAstro
Add typing hints to all methods ConnorStoneAstro/AutoProf astronomy documentation python pytorch science-research scientific-computing ConnorStoneAstro
Add username to extraction metadata SMI/SmiServices enhancement rkm
Remove unused globals associated with COOLING_CPU from global.h cholla-hydro/cholla code-cleanup evaneschneider
Remove functions associated with H correction on CPU from global.cpp and global.h cholla-hydro/cholla code-cleanup evaneschneider
Add button closing dangling kernels jupyterlab/jupyterlab enhancement help-wanted jupyter jupyterlab fcollonval
Convert docstrings to google format Autostronomy/AstroPhot astronomy documentation python pytorch refactor science-research scientific-computing ConnorStoneAstro
Convert docstrings to google format ConnorStoneAstro/AutoProf astronomy documentation python pytorch refactor science-research scientific-computing ConnorStoneAstro
Clean up module imports Autostronomy/AstroPhot astronomy python pytorch refactor science-research scientific-computing ConnorStoneAstro
Clean up module imports ConnorStoneAstro/AutoProf astronomy python pytorch refactor science-research scientific-computing ConnorStoneAstro
Documentation Issue about "-1" in lag energy spectrum StingraySoftware/stingray GSoC astronomy astrophysics blackhole blackholes data-analysis fourier-analysis fourier-transform hacktoberfest neutronstars pulsars time-series time-series-analysis timeseries x-ray x-ray-binaries yrxu
interp.interp2d is being deprecated dsavransky/EXOSIMS help-wanted dsavransky
lax.conv_transpose has different convention than TF, document it and make switching easy? google/jax documentation enhancement jax mattjj
Support lazy loading for `cupyx.scipy.*` submodules cupy/cupy catenhancement contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor kmaehashi
PERL5LIB missing when activating environment with Perl packages spack/spack bug build-tools hpc impact-low linux macos package-manager perl python radiuss scientific-computing spack marcodelapierre
Standardize on import numpy as np biopython/biopython Style bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment peterjc
"Missing secrets.toml" error message is printed incorrectly in Windows streamlit/streamlit data-analysis data-science data-visualization deep-learning developer-tools featurest.secrets machine-learning priorityP2 python statusconfirmed streamlit typebug vdonato
CI: add test for GCC 13.x and GCC trunk simd-everywhere/simde altivec arm arm64 avx avx2 avx512 fma gfni help-wanted mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization mr-c
DOC: Simplify pandas theme footer pandas-dev/pandas Docs alignment data-analysis data-science flexible pandas python datapythonista
Download and prepare PFAM-A database Robaina/Pynteny bioinformatics computational-biology enhancement genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block Robaina
BUG: solve_ivp inaccurate for piecewise-smooth system scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.integrate liamwheen
Running sessions status bar title does not work jupyterlab/jupyterlab bug jupyter jupyterlab krassowski
Migrate tbump.toml to pyproject.toml scikit-hep/pyhf asymptotic-formulas chore closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy packaging python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow kratsg
Unit tests for Utils Autostronomy/AstroPhot astronomy python pytorch science-research scientific-computing unit-test ConnorStoneAstro
Unit tests for Utils ConnorStoneAstro/AutoProf astronomy python pytorch science-research scientific-computing unit-test ConnorStoneAstro
Isolation of optuna integration modules. optuna/optuna contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python gen740
Produce more detailed MeshGenerator errors idaholab/moose C-Framework Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation loganharbour
Broken documentation links on Gensim's PyPI page RaRe-Technologies/gensim bug data-mining data-science difficulty-easy document-similarity documentation fasttext gensim impact-LOW information-retrieval machine-learning natural-language-processing neural-network nlp python reach-LOW topic-modeling word-embeddings word-similarity word2vec piskvorky
Allow selection and picking of surfaces with triangle strips fury-gl/fury 3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation Garyfallidis
ENH: expose `greedy` colouring from mapclassify geopandas/geopandas enhancement plotting martinfleis
BUG: to_parquet doesn't set correct geometry_type in GeoParquet metadata for 3D geometries geopandas/geopandas bug jorisvandenbossche
Restart from latest checkpoint ECP-WarpX/WarpX component-checkpoint/restart enhancement gpu help-wanted laser particle-in-cell physics pic plasma research simulation sheroytata
Streamline CI workflow Qiskit/qiskit-experiments qiskit coruscating
Distribution API seems missing containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci lnnwvr
New optimized variable-coefficient second-derivative operators of Stierström, Almquist, Mattsson ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Feature Types From Loaded Model catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial DanRamage
Use `__future__.annotations` everywhere in the Optuna code base optuna/optuna code-fix contribution-welcome distributed hacktoberfest hyperparameter-optimization machine-learning parallel python HideakiImamura
Create a non-root default user with id 1000 scikit-hep/pyhf Docker asymptotic-formulas closember cls feat/enhancement frequentist-statistics hep hep-ex high-energy-physics histfactory jax needs-triage numpy python pytorch scientific-computations scikit-hep scipy statistical-inference statistics tensorflow matthewfeickert
`pvlib.irradiance.poa_horizontal_ratio` should be removed pvlib/pvlib-python easy help-wanted photovoltaic python renewable-energy renewables solar-energy mikofski
Support different audio / directory structures CouncilDataProject/speakerbox audio-classification enhancement speaker-id speaker-identification transformers evamaxfield
" in returned Id attribute ( /v1.24/images/${img}/history )" >REST API: "\u003cmissing\u003e" instead of "" in returned Id attribute ( /v1.24/images/${img}/history ) containers/podman Good-First-Issue bugweek containers docker kind/bug kubernetes linux oci eriksjolund
Consistent naming of generators xgi-org/xgi higher-order-networks hypergraphs improve network-science nwlandry
Replace print statements by warnings or stderr in NCBIXML biopython/biopython bioinformatics biopython dna genomics phylogenetics protein protein-structure python sequence-alignment JoaoRodrigues
add automatic authorization to order/download icesat2py/icepyx closember community-driven enhancement hacktoberfest icesat-2 python3 JessicaS11
Potential bug could occur in deletion of files in test harness idaholab/moose C-TestHarness Good-first-issue T-task amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation permcody
Add Apriori algorithm also for better comparison firefly-cpp/NiaARM association-rule-mining association-rules data-mining data-science enhancement evolutionary-algorithms help-wanted swarm-intelligence minakshikaushik
update ICESat-2 resource guide icesat2py/icepyx closember community-driven documentation hacktoberfest icesat-2 python3 JessicaS11
MooseDocs media extension doesn't throw an error if there is a syntax issue in an option idaholab/moose C-Documentation Good-first-issue P-normal T-defect amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation cticenhour
get_lodf() function doesn't work properly with open lines mzy2240/ESA automation bug contingency-analysis esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability MaxB25
Allow deletions and insertions in virus properties input files nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov needs-triage neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus ammaraziz
Unify `get_residue_contact_pairs()` from buildgraph.py by `get_IRCs()` from irc.py DeepRank/deeprank-core nice-to-have stale utils DaniBodor
Support device mapping in kube play similar do Kubernetes device plugins containers/podman Good-First-Issue containers docker kube kubernetes linux oci volunteers-wanted rhatdan
Broken link in Minuit docs fitbenchmarking/fitbenchmarking Documentation Good-first-issue jess-farmer
compare_by plotter: filenames too long for large symbols JPenuchot/ctbench benchmark clang compilation data-analysis data-visualization gcc metaprogramming JPenuchot
Add reverse direction serialization Qiskit/rustworkx dag enhancement graph graph-theory python rust mtreinish
allow to set loglevel for healthcheck containers/podman Good-First-Issue containers docker kind/feature kubernetes linux oci nolange
remaining autodiff functors roualdes/bridgestan c cpp enhancement julia python r stan bob-carpenter
Convert all indexing variables to `size_t`/`ptrdiff_t` cholla-hydro/cholla code-cleanup enhancement refactor bcaddy
Allow custom link text in `\mylinkref` in docs JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization asinghvi17
Make HeSD a subset of Type Ia TeamCOMPAS/COMPAS enhancement urgency_low reinhold-willcox
Feature: Check for linearly independent / dependent vectors vprusso/toqito feature-request matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Suggestions for documentation and features biaslab/RxInfer.jl documentation enhancement John-Boik
Consider removing <4 gene limit NathanSkene/EWCE benchmarking deconvolution enhancement single-cell single-cell-rna-seq transcriptomics bschilder
New optimized second-derivative operators of Eriksson and Mattsson (2022) ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
Ability to build models from inside R and Rust roualdes/bridgestan R-lang c cpp help-wanted julia python r rust stan WardBrian
[Analysis] Analyze differences in outputs generated with LSA method and solved with linalg.solve DataverseLabs/pyinterpolate Good-First-Issue concept help-needed kriging machine-learning math-and-logic poisson-kriging python semivariogram spatial-analysis spatial-interpolation SimonMolinsky
Use pathlib or os.join method and global TEST_PATH variable consistently in test modules DeepRank/deeprank-core CI stale testing DaniBodor
Support local volumes with a lifetime longer than that of the podman host containers/podman Good-First-Issue containers docker kubernetes linux oci samuel-f
Support axis in unique method cupy/cupy catfeature contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx priomedium python rocm scipy tensor ReedCao
DOC: Fix docs for various offset constructors pandas-dev/pandas Docs Frequency alignment data-analysis data-science flexible pandas python Dr-Irv
Can't turn of the grid of two axis simultaneously JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization pabloemontes
Add full support for CDF gnudatalanguage/gdl antlr astronomy c++-only data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization GillesDuvert
[Request] Dates.unix2datetime with local time option JuliaLang/julia dates hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific kescobo
Styled input checkbox focus state is not visible on Ubuntu/Firefox jupyterlab/jupyterlab bug jupyter jupyterlab tagAccessibility krassowski
Tabs bar positioning in TabUI fury-gl/fury 3d-graphics category-UI game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation guaje
BUG: deprecation warnings for private API are misleading scipy/scipy algorithms closember defect deprecated maintenance python scientific-computing scipy tupui
outlet grid cells don't report channel outflow IMMM-SFA/mosartwmpy enhancement thurber
Links to videos and presentations on (or using) Makie JuliaPlots/Makie.jl documentation gpu graphics julia julia-language plotting visualization asinghvi17
Improve documentation on coordinate systems healpy/healpy Good-first-issue HelpUs Cameron-Van-Eck
DOC: docstrings in robust.norms, improve, reorganize statsmodels/statsmodels comp-docs comp-robust count-model data-analysis data-science econometrics forecasting generalized-linear-models hypothesis-testing prediction python regression-models robust-estimation statistics timeseries-analysis josef-pkt
Showing strings compactifies too aggressively JuliaLang/julia display-and-printing hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific strings KristofferC
Add type stability tests JuliaHEP/UnROOT.jl cern-root hacktoberfest help-wanted hep hep-ex high-energy-physics julia particle-physics tamasgal
`verdi archive create --test-run` still claims to have written the archive aiidateam/aiida-core aiida computational-science data-provenance database provenance scheduler ssh type/bug workflow workflow-engine workflows mbercx
Unspecified feature name when getting most of errors caused by data catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial AndreyGurevich
Add description field to events page hpc-social/events vsoch
Add to calendar button / download link to ical hpc-social/events vsoch
How to get or create plot tree structure in R? catboost/catboost R big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial viniCerutti
gallery disappears when switching between results and parameter sections kanaverse/kana bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly jkanche
ENH: add dwithin predicate and associated distance to sindex query / spatial join geopandas/geopandas enhancement shapely-parity brendan-ward
The input (stdin) styling does not match that of JupyterLab jupyterlab/jupyterlab bug jupyter jupyterlab tagCSS SylvainCorlay
Improve version tracking and deprecate SVN support dsavransky/EXOSIMS enhancement help-wanted dsavransky
Sketch seed matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt status-needs-rebase status-orphaned-PR tk wx oscargus
STY: pysat_testing and empty datasets pysat/pysat cubesat electric-fields ionosphere magnetosphere measurements nasa nasa-data netcdf plasma python radar-measurements satellite-data science-research space space-science style thermosphere jklenzing
BUG: Add ``numeric_only`` to function signature of ``DataFrameGroupBy.cumprod`` and ``DataFrameGroupBy.cumsum` pandas-dev/pandas Bug Clean Groupby alignment data-analysis data-science flexible pandas python phofl
ENH: Add ``numeric_only`` to ``DataFrame.cum*`` methods pandas-dev/pandas API---Consistency Enhancement Transformations alignment data-analysis data-science flexible pandas python phofl
Document usage of colorbuffer to plot GLMakie 3D figure into a CairoMakie Figure JuliaPlots/Makie.jl documentation gpu graphics help-wanted julia julia-language plotting visualization felixcremer
Feature: Pretty Good Measurement vprusso/toqito enhancement feature-request help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Classical in-situ radiation computation ECP-WarpX/WarpX component-diagnostics gpu help-wanted laser particle-in-cell physics pic plasma research simulation berceanu
Dialog closes unexpectedly when typing in the textarea jupyterlab/jupyterlab bug jupyter jupyterlab verilog15
Invalid "Last Up" time in HyperV containers/podman Good-First-Issue containers docker kind/bug kubernetes linux oci podman-machine windows baude
Remove astro-colibri from Summary snad-space/ztf-viewer pruzhinskaya
[Bug]: canvas pick events not working when Axes belongs to a subfigure matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt status-confirmed-bug tk wx ndeadly
optimized convenance methods for conversion between SIMDe public types of the same size simd-everywhere/simde altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization mr-c
Ensure compliance with more Ruff rules astropy/astropy Feature-Request Package-novice Refactoring astronomy astrophysics astropy dev-automation python science eerovaher
[Bug]: Colorbar cannot be added to another figure matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx Wrzlprmft
`Booster.save_model(format="pmml")` is highly inefficient in size. catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial UriyaHarpeness
catboost is unable to calculate shap values when set_scale_and_bias is used catboost/catboost big-data bug catboost categorical-features coreml cuda data-mining data-science decision-trees gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial antipisa
remove np random generators for memory reasons xgi-org/xgi higher-order-networks hypergraphs network-science maximelucas
Register LaTeX reader for Cosmology astropy/astropy Feature-Request astronomy astrophysics astropy cosmology python science nstarman
Deleting brackets with auto-close-brackets enabled only deletes one of the brackets (jupyterlab 4.0) jupyterlab/jupyterlab bug jupyter jupyterlab pkgcodemirror tagRegression BartoszBartmanski
DOC: 404 Error when trying to switch doc versions from 1.4.4 version page pandas-dev/pandas Docs alignment data-analysis data-science flexible pandas python DominikBerger01
docs: Add triangular solve figure thomaspinder/GPJax bayesian-inference documentation gaussian-processes jax machine-learning probabilistic-programming thomaspinder
feat: Attach priors to parameters thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming thomaspinder
dev: Flag when the PyTree is in its constrained or unconstrained state thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming thomaspinder
Granular `@fastmath` flags JuliaLang/julia feature hacktoberfest help-wanted hpc julia julia-language julialang machine-learning numerical programming-language science scientific mikmoore
ENH(web): Allow us to hide a dataset from the dataset selector nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus corneliusroemer
[ENH]: subfigure_mosaic matplotlib/matplotlib Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx anntzer
Numba RandomState overload fails with empty size numba/numba bug---incorrect-behavior compiler cuda llvm numpy parallel python ricardoV94
Map factory does not support `pathlib.Path.glob` sunpy/sunpy Feature-Request Good-First-Issue astronomy astropy hacktoberfest map python solar solar-physics sun sunpy wtbarnes
[feature] complete materials.py lcpp-org/RustBCA bca bca-codes binary-collision-approximation binary-collisions bohdansky electronic-stopping enhancement fusion help-wanted implantation incident-ion ion-material-interactions ion-solid-interactions materials-science nuclear-fusion nuclear-stopping plasma-material-interactions range rust simulation sputtering yamamura drobnyjt
`@. vec = vec +1` gives unhelpful error JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific LilithHafner
compiler find: `clang` compilers don't look for `flang-new` on Fedora spack/spack bug build-tools hpc impact-low linux macos package-manager python radiuss scientific-computing spack iamashwin99
Alternative method of particle initialisation from a file ECP-WarpX/WarpX component-core component-openPMD gpu laser particle-in-cell physics pic plasma research simulation PhysicsDan
Add and integrate Scatter plot and grouped matrix visualization techniques firefly-cpp/NiaARM association-rule-mining association-rules data-mining data-science enhancement evolutionary-algorithms swarm-intelligence BukovnikMiha
Improve label placement in output plots lucydot/effmass lucydot
Support loading aux string directly mzy2240/ESA automation contingency-analysis enhancement esa graph-analysis help-wanted hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability mzy2240
2intersect: implement AVX512F optimizations proposed by Guille Díez-Cañas arXiv:2112.06342 [cs.DS] simd-everywhere/simde altivec arm arm64 avx avx2 avx512 enhancement fma gfni mmx neon powerpc simd simd-intrinsics sse sse2 sse3 sse41 sse42 ssse3 vectorization mr-c
Remove reduce DeepRank/deeprank-core MolStruct priority stale DaniBodor
Refactor: Permute systems index offset vprusso/toqito matrix-analysis physics python python-3 quantum quantum-computing quantum-information refactor unitaryhack vprusso
update GitHub Action steps MrMinimal64/multivar_horner enhancement evaluation factorization help-wanted horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3 jannikmi
promote logger and writer mock objects from pathfinder utils stan-dev/stan bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics code-cleanup feature stan testing bob-carpenter
deprecate cogent3.util.table.tolist() cogent3/cogent3 bioinformatics biological-sequence-analysis biology biopython data-science deprecated enhancement evolution genomics markov-chain maximum-likelihood molecular-evolution non-stationary parallel phylogenetic-trees phylogenetics pycogent python sequence-alignment signal-processing statistics trivial KatherineCaley
Reword stacktrace language to avoid ambiguity JuliaLang/julia error-messages hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific willow-ahrens
[Bug]: alpha array-type not working with RGB image in imshow() matplotlib/matplotlib Difficulty-Medium Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt status-confirmed-bug status-has-patch tk topic-color/alpha topic-images wx patquem
Make Installation docs more prominent rather than GitHub releases? nextstrain/nextclade clade clades coronavirus covid covid-19 covid19 dna help-wanted influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain tfeat virus theosanderson
feat: Implement beta likelihood thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming thomaspinder
feat: Implement Gamma likelihood thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming thomaspinder
feat: Implement a multi-class discrete likelihood function. thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming thomaspinder
dev: Add non-conjugate smoke test thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming testing thomaspinder
feat: Monte Carlo integrator. thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming daniel-dodd
feat: Poisson closed form expression for the variational expectation. thomaspinder/GPJax bayesian-inference enhancement gaussian-processes help-wanted jax machine-learning probabilistic-programming daniel-dodd
Update processor_x86 with Zen4 and newer Intel JuliaLang/julia hacktoberfest hpc julia julia-language julialang llvm machine-learning numerical programming-language science scientific x86 vchuravy
Prefer Insight Journal DOIs to URL in references InsightSoftwareConsortium/ITK Good-first-issue cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing typeDocumentation jhlegarreta
[Doc]: dynamically resize the mathtext symbol tables matplotlib/matplotlib Documentation Good-first-issue Maintenance data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-text/mathtext wx story645
DOC Introduce dropdowns in the User Guide scikit-learn/scikit-learn Documentation Meta-issue data-analysis data-science machine-learning python statistics ArturoAmorQ
JSON export incompletely specifies categorical splits of non-symmetric trees catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial BenModulusLabs
Switch to ruff for linting pyro-ppl/pyro bayesian bayesian-inference deep-learning help-wanted machine-learning probabilistic-modeling probabilistic-programming python pytorch testing variational-inference fritzo
Split descriptions are of insufficient precision catboost/catboost big-data catboost categorical-features coreml cuda data-mining data-science decision-trees feature-request gbdt gbm gpu gpu-computing gradient-boosting kaggle machine-learning python r tutorial BenModulusLabs
Documentation: Update usage of partial trace and partial transpose in tutorial vprusso/toqito documentation help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
Reject starting with multiple threads if `--handle-signals=no` JuliaLang/julia doc error-messages hacktoberfest hpc julia julia-language julialang machine-learning multithreading numerical programming-language science scientific vchuravy
Documentation update to match new defaults TeamCOMPAS/COMPAS documentation ilyamandel
DevOps: Integrate linting within GitHub Actions pipeline vprusso/toqito devops enhancement help-wanted matrix-analysis physics python python-3 quantum quantum-computing quantum-information unitaryhack vprusso
`allunique` is not optimized for sorted arrays JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific chrstphrbrns
`allunique(::String)` performance anomaly JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific strings chrstphrbrns
`dask.array.linalg.qr` does not conform to the Array API spec dask/dask array dask numpy pandas pydata python scikit-learn scipy ogrisel
`dask.array.linalg.svd` does not conform to the Array API spec dask/dask array dask numpy pandas pydata python scikit-learn scipy ogrisel
[Doc]: document how to get list of registered colormaps matplotlib/matplotlib Documentation Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-color/color-&-colormaps wx story645
Add hover text to tables fitbenchmarking/fitbenchmarking Enhancement Good-first-issue tyronerees
TST: mixed_int_string Index pandas-dev/pandas Index Testing alignment data-analysis data-science flexible pandas python jbrockmendel
Add reference magnitudes to downloadable CSV files snad-space/ztf-viewer hombit
[Bug]: macOS backend run by non-logged-in user crashes in Ventura matplotlib/matplotlib Difficulty-Medium GUI-MacOSX Good-first-issue data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk wx tjni
Read and write Strahlkorper coefficients from disk sxs-collaboration/spectre nilsvu
Mention `--heap-size-hint` in Command-line Interface page JuliaLang/julia GC doc hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific prbzrg
a new algorithm that returns all possible shortest paths for a source target pair Qiskit/rustworkx dag graph graph-theory python rust rok24
Document that describe is using approximate algorithms dask/dask dask dataframe documentation numpy pandas pydata python scikit-learn scipy fjetter
sample_surface flag for CartesianDomain is missing mathLab/PINA deep-learning differential-equations enhancement hacktoberfest lightining machine-learning modeling neural-network ode pde physics-informed physics-informed-neural-networks pinn python pytorch v0.1 ndem0
location list condition mathLab/PINA deep-learning differential-equations enhancement hacktoberfest lightining machine-learning modeling neural-network ode pde physics-informed physics-informed-neural-networks pinn python pytorch v0.1 ndem0
automatic dimension for extra features mathLab/PINA deep-learning differential-equations enhancement hacktoberfest lightining machine-learning modeling neural-network ode pde physics-informed physics-informed-neural-networks pinn python pytorch v0.1 ndem0
New first- and second-derivative coefficients of Sharan, Brady, Livescu (2022) ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin enhancement finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
[Bug]: Pie chart autopcr % symbol disappears with text.usetex="True" matplotlib/matplotlib Difficulty-Medium Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-text/usetex wx pavaninguva
More example notebooks CQCL/qujax documentation jax python quantum SamDuffield
Minimal working code example in experiment API docs Qiskit/qiskit-experiments documentation qiskit coruscating
Doc: Generate a comparison table for matrix class methods cupy/cupy catdocument contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor kmaehashi
TST: div/truediv with PyArrow duration types pandas-dev/pandas Arrow Timedelta alignment data-analysis data-science flexible pandas python phofl
`circshift(::Tuple, ::Int)` not defined JuliaLang/julia hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific jariji
DOC linked SplineTransformer to time-related feature engineering example scikit-learn/scikit-learn Documentation Stalled data-analysis data-science help-wanted machine-learning modulepreprocessing python statistics scaja
Better typing and checks for index header mad-lab-fau/tpcp algorithms biosignals data-management data-science machine-learning python AKuederle
Generated cached builtins from a fixed list rather than looking up in the interpreter cython/cython big-data c cleanup cpp cpython cpython-extensions cython help-wanted performance python da-woods
Remove References to Garnett in Package-wide Documentation glotzerlab/freud analysis computational-chemistry computational-physics data-analysis documentation hacktoberfest molecular-dynamics monte-carlo-simulation particle-system python science scientific-computing spatial-analysis task tommy-waltmann
Update host_callback used in blackjax/progress_bar.py blackjax-devs/blackjax bayesian-inference hamiltonian-monte-carlo probabilistic-programming sampling-methods junpenglao
Change rendering of html plotly plots fitbenchmarking/fitbenchmarking Bug Good-first-issue tyronerees
[ENH]: Add interpolation_stage selector for images in qt figureoptions matplotlib/matplotlib GUI-Qt Good-first-issue New-feature data-science data-visualization gtk hacktoberfest matplotlib plotting python qt tk topic-images wx anntzer
No documentation for Julia 1.10-beta JuliaLang/julia doc docsystem hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific eschnett
Add job splitting information to the experiment class Qiskit/qiskit-experiments enhancement qiskit coruscating
Add some tests with rationals ranocha/SummationByPartsOperators.jl boundary-conditions cgsem continuous-galerkin derivative-operator dgsem discontinuous-galerkin finite-difference fourier hacktoberfest julia sbp summation-by-parts ranocha
generalize our `BigFloat(::Float64)` method to more integer and floatingpoint types. JuliaLang/julia bignums hacktoberfest hpc julia julia-language julialang machine-learning numerical performance programming-language science scientific oscardssmith
Clustering metrics PyTorchLightning/metrics New-metric analyses data-science deep-learning enhancement machine-learning metrics python pytorch SkafteNicki
TST Extend tests for `scipy.sparse.*array` scikit-learn/scikit-learn Meta-issue Sprint data-analysis data-science machine-learning moduletest-suite python statistics jjerphan
`pull-request-labeler` misbehaving and therefore disabled again scipy/scipy CI algorithms closember python scientific-computing scipy rgommers
Implement CCA-classes that can account for sample groups jameschapman19/cca_zoo canonical-correlation-analysis cca cca-zoo dcca deep enhancement help-wanted kernel multiset-cca multiview pls pytorch tensor-cca JohannesWiesner
ENH: make guess_datetime_format public pandas-dev/pandas Enhancement Timeseries alignment data-analysis data-science flexible pandas python joefutrelle
Implementing tension statistics williamjameshandley/anesthetic bayesian-inference enhancement fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy DilyOng
Make GenericMap.plot() arguments keyword only sunpy/sunpy Effort-Low Feature-Request Good-First-Issue Package-Novice Priority-Medium astronomy astropy hacktoberfest map python solar solar-physics sun sunpy dstansby
Use DocumenterCitations.jl JuliaDynamics/TimeseriesSurrogates.jl documentation hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries kahaaga
InexactError shows `Inf16` as `Inf` JuliaLang/julia error-messages hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific LilithHafner
Making support for Dev Containers for GitHub Codespaces streamlit/streamlit data-analysis data-science data-visualization deep-learning developer-tools machine-learning python streamlit typeenhancement cr2007
Expand discriminator documentation Qiskit/qiskit-experiments documentation qiskit coruscating
Remove internal coordinate-frame docstring code now that we depend on Astropy 5.0 sunpy/sunpy Documentation Effort-Low Good-First-Issue Package-Novice Priority-Low Refactoring astronomy astropy coordinates hacktoberfest python solar solar-physics sun sunpy ayshih
Search box wraps text but it should grow jupyterlab/jupyterlab bug jupyter jupyterlab pkgdocumentsearch krassowski
Figures for last "Crash-course in timeseries surrogate testing" doc page not generated JuliaDynamics/TimeseriesSurrogates.jl documentation hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries kahaaga
TST: SphericalVoronoi tests not sensitive to regions internal type scipy/scipy algorithms closember python scientific-computing scipy scipy.spatial tylerjereddy
Markdown documentation should explain the md string macro. JuliaLang/julia doc hacktoberfest hpc julia julia-language julialang machine-learning markdown numerical programming-language science scientific DrEntropy
add a way to test whether exported symbols are documented JuliaLang/julia docsystem feature hacktoberfest hpc julia julia-language julialang machine-learning numerical programming-language science scientific testsystem stevengj
Implement string representation (`__repr__`) in sparse matrix classes cupy/cupy catenhancement contribution-welcome cublas cuda cudnn cupy curand cusolver cusparse cusparselt cutensor gpu nccl numpy nvrtc nvtx python rocm scipy tensor kmaehashi
DOC: 1D arrays with KDTree scipy/scipy Documentation algorithms closember python scientific-computing scipy scipy.spatial rjsdotorg
docs: Fit models with standard for loop + notebook on training loops. thomaspinder/GPJax bayesian-inference documentation gaussian-processes jax machine-learning probabilistic-programming